Wall clock time and date at job start Wed Apr 1 2020 00:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42902 * 109.47125 * 283.06908 * 3 2 1 5 5 C 1.42898 * 114.00014 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47165 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47385 * 179.97438 * 6 5 4 8 8 O 1.21290 * 120.00085 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00217 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99790 * 180.02562 * 9 7 6 11 11 H 1.08993 * 110.27143 * 35.63792 * 10 9 7 12 12 C 1.53994 * 110.30715 * 273.54614 * 10 9 7 13 13 N 1.47903 * 107.05424 * 242.21042 * 12 10 9 14 14 C 1.46904 * 111.00038 * 214.15460 * 13 12 10 15 15 C 1.50700 * 109.47192 * 170.00163 * 14 13 12 16 16 O 1.21293 * 119.99810 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99675 * 180.28082 * 15 14 13 18 18 C 1.37102 * 119.99634 * 179.72687 * 17 15 14 19 19 H 1.08002 * 119.99868 * 359.97438 * 18 17 15 20 20 C 1.38945 * 119.99860 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99894 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00219 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47028 * 59.99886 * 22 20 18 24 24 H 1.48497 * 109.47531 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47039 * 300.00633 * 22 20 18 26 26 C 1.48527 * 105.82321 * 334.67235 * 13 12 10 27 27 C 1.54594 * 110.39007 * 157.78064 * 10 9 7 28 28 H 1.09002 * 110.72384 * 22.55912 * 27 10 9 29 29 O 1.42902 * 110.72751 * 259.45303 * 27 10 9 30 30 H 4.38449 * 5.44400 * 179.97438 * 4 1 2 31 31 H 1.08997 * 109.47032 * 163.06761 * 3 2 1 32 32 H 1.09004 * 109.47353 * 43.06855 * 3 2 1 33 33 H 1.09003 * 109.47410 * 59.99847 * 5 4 3 34 34 H 1.09004 * 109.47023 * 300.00050 * 5 4 3 35 35 H 1.09005 * 109.47288 * 60.00134 * 6 5 4 36 36 H 1.09001 * 109.47483 * 300.00542 * 6 5 4 37 37 H 0.96997 * 119.99656 * 0.02562 * 9 7 6 38 38 H 1.09001 * 109.91602 * 122.86106 * 12 10 9 39 39 H 1.08999 * 110.08310 * 1.65652 * 12 10 9 40 40 H 1.09009 * 109.46542 * 50.00194 * 14 13 12 41 41 H 1.08998 * 109.47050 * 290.00728 * 14 13 12 42 42 H 0.97001 * 120.00485 * 359.71840 * 17 15 14 43 43 H 0.97004 * 119.99542 * 179.97438 * 21 20 18 44 44 H 1.09003 * 110.66931 * 157.64305 * 26 13 12 45 45 H 1.09001 * 110.66633 * 280.76824 * 26 13 12 46 46 H 0.96692 * 114.00290 * 179.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1225 -0.3038 1.3124 5 6 4.5470 -0.3281 1.4224 6 6 4.9417 -0.6616 2.8625 7 6 6.4439 -0.6879 2.9785 8 8 7.1314 -0.4616 2.0052 9 7 7.0237 -0.9628 4.1637 10 6 8.4841 -0.9878 4.2765 11 1 8.9256 -0.2264 3.6336 12 6 9.0252 -2.3808 3.9046 13 7 9.6942 -2.9216 5.1077 14 6 10.8557 -3.7425 4.7400 15 6 11.6505 -4.0713 5.9774 16 8 11.2851 -3.6624 7.0593 17 7 12.7702 -4.8153 5.8811 18 6 13.4963 -5.1097 7.0062 19 1 13.1713 -4.7451 7.9694 20 6 14.6503 -5.8772 6.9071 21 7 15.0459 -6.3205 5.7350 22 14 15.6401 -6.2778 8.4398 23 1 14.7892 -7.0311 9.3957 24 1 16.8171 -7.1031 8.0674 25 1 16.1011 -5.0170 9.0749 26 6 10.1090 -1.7399 5.9062 27 6 8.9149 -0.7660 5.7446 28 1 8.1072 -1.0294 6.4275 29 8 9.3288 0.5861 5.9514 30 1 -1.0500 0.0002 0.0001 31 1 3.0089 0.9839 -0.2993 32 1 3.0097 -0.7499 -0.7018 33 1 4.9490 0.6486 1.1528 34 1 4.9505 -1.0853 0.7501 35 1 4.5397 -1.6382 3.1326 36 1 4.5381 0.0958 3.5346 37 1 6.4739 -1.1441 4.9420 38 1 9.7421 -2.2948 3.0881 39 1 8.2043 -3.0348 3.6106 40 1 11.4838 -3.1906 4.0406 41 1 10.5144 -4.6655 4.2713 42 1 13.0622 -5.1427 5.0160 43 1 15.8518 -6.8560 5.6658 44 1 10.2451 -2.0114 6.9530 45 1 11.0206 -1.3017 5.4997 46 1 9.6087 0.7775 6.8569 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192886186.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:03 Heat of formation + Delta-G solvation = -123.613227 kcal Electronic energy + Delta-G solvation = -28372.782028 eV Core-core repulsion = 24070.511970 eV Total energy + Delta-G solvation = -4302.270057 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.44073 -40.49584 -39.43566 -38.91095 -36.92953 -36.00454 -35.36291 -34.44611 -33.32887 -32.70785 -31.24183 -29.19537 -28.23405 -27.72374 -26.06690 -24.59730 -22.85124 -21.88282 -21.38859 -21.05661 -19.88424 -19.42431 -18.76632 -18.31084 -17.81658 -17.48381 -17.43909 -16.97568 -16.68340 -16.35426 -16.19000 -16.09311 -15.91242 -15.60207 -15.36910 -14.90773 -14.54367 -14.44583 -14.30417 -13.85038 -13.75207 -13.61264 -13.49093 -13.38430 -13.02179 -12.89046 -12.65346 -12.59637 -12.47466 -12.43270 -12.13302 -11.78471 -11.54406 -11.46645 -11.44994 -11.23479 -10.90644 -10.57625 -10.33349 -10.12199 -10.01727 -9.45864 -8.47005 -5.96019 1.39719 1.42311 1.43065 1.53025 1.56198 1.82303 2.01203 2.03302 2.27503 2.63801 2.94769 3.10577 3.19620 3.29334 3.56438 3.59629 3.70324 3.84495 3.98950 4.06480 4.20183 4.21597 4.27040 4.31392 4.33504 4.42159 4.44791 4.48958 4.52486 4.63805 4.75846 4.82456 4.84145 4.85313 5.03538 5.10649 5.39446 5.40932 5.71068 5.80429 6.02778 6.06454 6.47684 6.58365 6.59778 6.75637 7.11214 7.17679 7.53506 8.07954 8.70070 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026652 B = 0.001643 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.341978 B =17035.901890 C =17620.141333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.239 4.239 3 C 0.167 3.833 4 O -0.400 6.400 5 C 0.078 3.922 6 C -0.130 4.130 7 C 0.521 3.479 8 O -0.581 6.581 9 N -0.704 5.704 10 C 0.150 3.850 11 H 0.085 0.915 12 C 0.031 3.969 13 N -0.498 5.498 14 C 0.045 3.955 15 C 0.441 3.559 16 O -0.610 6.610 17 N -0.571 5.571 18 C -0.334 4.334 19 H 0.083 0.917 20 C -0.012 4.012 21 N -0.921 5.921 22 Si 0.994 3.006 23 H -0.271 1.271 24 H -0.273 1.273 25 H -0.271 1.271 26 C 0.012 3.988 27 C 0.107 3.893 28 H 0.098 0.902 29 O -0.571 6.571 30 H 0.253 0.747 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.419 0.581 38 H 0.053 0.947 39 H 0.095 0.905 40 H 0.066 0.934 41 H 0.112 0.888 42 H 0.395 0.605 43 H 0.277 0.723 44 H 0.098 0.902 45 H 0.032 0.968 46 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.329 12.188 -8.565 27.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.239 4.239 3 C 0.092 3.908 4 O -0.320 6.320 5 C 0.002 3.998 6 C -0.169 4.169 7 C 0.309 3.691 8 O -0.461 6.461 9 N -0.357 5.357 10 C 0.043 3.957 11 H 0.103 0.897 12 C -0.098 4.098 13 N -0.223 5.223 14 C -0.087 4.087 15 C 0.228 3.772 16 O -0.497 6.497 17 N -0.208 5.208 18 C -0.463 4.463 19 H 0.101 0.899 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.817 3.183 23 H -0.196 1.196 24 H -0.197 1.197 25 H -0.196 1.196 26 C -0.117 4.117 27 C 0.047 3.953 28 H 0.116 0.884 29 O -0.379 6.379 30 H 0.269 0.731 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.257 0.743 38 H 0.071 0.929 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.130 0.870 42 H 0.229 0.771 43 H 0.087 0.913 44 H 0.116 0.884 45 H 0.050 0.950 46 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -23.513 12.179 -8.771 27.894 hybrid contribution 1.626 -0.212 0.346 1.676 sum -21.886 11.967 -8.425 26.329 Atomic orbital electron populations 1.25871 0.96847 0.99186 0.96012 1.23100 0.94890 1.02236 1.03687 1.19229 0.84535 1.01995 0.85030 1.87823 1.21907 1.92267 1.30044 1.22135 0.79519 1.01575 0.96603 1.21418 0.89860 1.07293 0.98373 1.20860 0.91099 0.74834 0.82323 1.90725 1.66441 1.50606 1.38303 1.45853 1.06141 1.71228 1.12452 1.21442 0.81451 0.96468 0.96297 0.89656 1.23367 0.99585 0.94925 0.91912 1.64577 1.23521 1.17785 1.16432 1.22041 0.91810 1.00346 0.94455 1.20550 0.82737 0.82751 0.91159 1.90409 1.71138 1.57303 1.30827 1.41919 1.22165 1.46521 1.10180 1.19659 1.05936 1.31791 0.88920 0.89892 1.26052 0.97932 0.96063 1.01174 1.69677 1.25483 1.36156 1.24828 0.84977 0.77446 0.78419 0.77439 1.19594 1.19717 1.19629 1.23976 0.96337 0.89840 1.01503 1.22842 0.95630 0.81534 0.95337 0.88413 1.86430 1.87818 1.26630 1.37063 0.73081 0.89479 0.89528 0.92393 0.92344 0.85869 0.85917 0.74324 0.92884 0.88631 0.91645 0.87038 0.77107 0.91320 0.88427 0.95007 0.74842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 19.25 74.32 1.43 -0.55 16 2 C -0.24 -3.83 13.73 31.12 0.43 -3.41 16 3 C 0.17 2.35 6.41 70.18 0.45 2.80 16 4 O -0.40 -6.86 10.30 -148.98 -1.53 -8.39 16 5 C 0.08 1.21 5.23 71.98 0.38 1.58 16 6 C -0.13 -1.64 6.07 29.85 0.18 -1.46 16 7 C 0.52 10.01 7.82 87.65 0.69 10.69 16 8 O -0.58 -16.06 15.68 -3.06 -0.05 -16.11 16 9 N -0.70 -12.20 5.03 -438.36 -2.21 -14.41 16 10 C 0.15 3.50 3.06 45.87 0.14 3.64 16 11 H 0.09 2.39 7.58 -2.39 -0.02 2.38 16 12 C 0.03 0.80 6.48 86.45 0.56 1.36 16 13 N -0.50 -15.62 5.26 -887.56 -4.67 -20.29 16 14 C 0.04 1.56 5.52 85.56 0.47 2.03 16 15 C 0.44 20.39 7.49 87.66 0.66 21.04 16 16 O -0.61 -31.56 13.10 -3.07 -0.04 -31.60 16 17 N -0.57 -28.87 5.29 -306.98 -1.62 -30.49 16 18 C -0.33 -18.56 9.68 84.04 0.81 -17.75 16 19 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 20 C -0.01 -0.65 5.50 84.92 0.47 -0.18 16 21 N -0.92 -49.39 13.05 21.66 0.28 -49.11 16 22 Si 0.99 42.24 29.55 68.60 2.03 44.27 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 26 C 0.01 0.38 5.03 86.65 0.44 0.81 16 27 C 0.11 2.46 4.14 31.80 0.13 2.60 16 28 H 0.10 1.85 7.74 -2.39 -0.02 1.83 16 29 O -0.57 -12.77 13.41 -148.98 -2.00 -14.76 16 30 H 0.25 0.91 7.80 -4.42 -0.03 0.88 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 34 H 0.06 0.94 8.10 -2.38 -0.02 0.92 16 35 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.42 4.77 8.35 -92.71 -0.77 3.99 16 38 H 0.05 1.40 7.57 -2.39 -0.02 1.38 16 39 H 0.10 2.27 7.93 -2.39 -0.02 2.25 16 40 H 0.07 2.12 7.81 -2.38 -0.02 2.10 16 41 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 42 H 0.40 19.21 7.90 -92.71 -0.73 18.48 16 43 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 44 H 0.10 3.65 5.97 -2.39 -0.01 3.63 16 45 H 0.03 1.09 8.02 -2.39 -0.02 1.08 16 46 H 0.40 5.91 9.12 -74.06 -0.68 5.24 16 Total: -1.00 -74.80 395.56 -3.73 -78.53 By element: Atomic # 1 Polarization: 40.30 SS G_CDS: -1.15 Total: 39.15 kcal Atomic # 6 Polarization: 16.00 SS G_CDS: 7.23 Total: 23.23 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -8.21 Total: -114.30 kcal Atomic # 8 Polarization: -67.26 SS G_CDS: -3.62 Total: -70.88 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -74.80 -3.73 -78.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192886186.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.086 kcal (2) G-P(sol) polarization free energy of solvation -74.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds