Wall clock time and date at job start Wed Apr 1 2020 00:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 O 1.42905 * 109.47444 * 251.72990 * 3 2 1 5 5 C 1.42897 * 113.99939 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46666 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47178 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99992 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00130 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99989 * 179.97438 * 9 7 6 11 11 H 1.08998 * 110.36884 * 32.81972 * 10 9 7 12 12 C 1.54377 * 110.32451 * 270.63549 * 10 9 7 13 13 N 1.48562 * 104.59385 * 217.24799 * 12 10 9 14 14 C 1.46899 * 110.99570 * 159.03985 * 13 12 10 15 15 C 1.50701 * 109.46761 * 174.70728 * 14 13 12 16 16 O 1.21291 * 120.00352 * 0.02562 * 15 14 13 17 17 N 1.34778 * 119.99829 * 179.97438 * 15 14 13 18 18 C 1.37093 * 119.99912 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00388 * 0.02562 * 18 17 15 20 20 C 1.38953 * 120.00184 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99612 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00409 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47255 * 59.99437 * 22 20 18 24 24 H 1.48496 * 109.47606 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.46946 * 299.99788 * 22 20 18 26 26 C 1.48568 * 104.21841 * 39.48734 * 13 12 10 27 27 C 1.54259 * 110.32385 * 154.99651 * 10 9 7 28 28 H 1.08995 * 110.41781 * 237.84222 * 27 10 9 29 29 O 1.42903 * 110.32552 * 0.02562 * 27 10 9 30 30 H 4.38456 * 5.44442 * 179.97438 * 4 1 2 31 31 H 1.08993 * 109.47281 * 131.72551 * 3 2 1 32 32 H 1.09008 * 109.46948 * 11.72490 * 3 2 1 33 33 H 1.08993 * 109.47418 * 60.00027 * 5 4 3 34 34 H 1.09002 * 109.47137 * 299.99202 * 5 4 3 35 35 H 1.08997 * 109.47532 * 59.99277 * 6 5 4 36 36 H 1.09008 * 109.47140 * 299.99420 * 6 5 4 37 37 H 0.97002 * 120.00440 * 359.97438 * 9 7 6 38 38 H 1.09000 * 110.41059 * 98.47492 * 12 10 9 39 39 H 1.08997 * 110.51245 * 336.08255 * 12 10 9 40 40 H 1.08994 * 109.47553 * 294.70896 * 14 13 12 41 41 H 1.09004 * 109.47238 * 54.71022 * 14 13 12 42 42 H 0.97000 * 120.00203 * 0.02562 * 17 15 14 43 43 H 0.97003 * 119.99527 * 179.97438 * 21 20 18 44 44 H 1.09002 * 110.40652 * 201.73024 * 26 13 12 45 45 H 1.08999 * 110.51037 * 79.34722 * 26 13 12 46 46 H 0.96700 * 114.00311 * 177.08922 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1222 0.4232 1.2794 5 6 4.5467 0.4598 1.3863 6 6 4.9410 0.9240 2.7898 7 6 6.4433 0.9631 2.9025 8 8 7.1309 0.6501 1.9537 9 7 7.0227 1.3460 4.0575 10 6 8.4832 1.3835 4.1671 11 1 8.9288 1.6500 3.2088 12 6 9.0201 0.0180 4.6470 13 7 10.1507 0.3565 5.5494 14 6 10.4495 -0.7573 6.4594 15 6 11.6789 -0.4300 7.2672 16 8 12.2497 0.6273 7.1015 17 7 12.1435 -1.3117 8.1745 18 6 13.2616 -1.0137 8.9097 19 1 13.7698 -0.0723 8.7622 20 6 13.7410 -1.9230 9.8447 21 7 13.1223 -3.0683 10.0245 22 14 15.2640 -1.5167 10.8470 23 1 15.0218 -0.2831 11.6376 24 1 15.5659 -2.6424 11.7672 25 1 16.4148 -1.3012 9.9335 26 6 9.6736 1.5454 6.3019 27 6 8.9131 2.3883 5.2558 28 1 9.5692 3.1492 4.8332 29 8 7.7652 2.9979 5.8498 30 1 -1.0501 0.0001 -0.0002 31 1 3.0090 0.6847 -0.7669 32 1 3.0098 -1.0055 -0.2089 33 1 4.9488 1.1537 0.6482 34 1 4.9503 -0.5366 1.2060 35 1 4.5388 0.2305 3.5283 36 1 4.5375 1.9205 2.9697 37 1 6.4728 1.5967 4.8163 38 1 9.3729 -0.5706 3.8001 39 1 8.2484 -0.5258 5.1918 40 1 9.6051 -0.9149 7.1304 41 1 10.6264 -1.6630 5.8792 42 1 11.6868 -2.1571 8.3072 43 1 13.4572 -3.7032 10.6770 44 1 10.5184 2.1067 6.7011 45 1 9.0038 1.2441 7.1073 46 1 7.9725 3.6065 6.5721 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219613656.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:08 Heat of formation + Delta-G solvation = -94.179843 kcal Electronic energy + Delta-G solvation = -28383.353102 eV Core-core repulsion = 24082.359372 eV Total energy + Delta-G solvation = -4300.993730 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.43250 -39.19485 -38.36392 -37.84044 -35.84345 -34.41434 -33.88968 -33.82990 -31.99592 -31.29496 -30.16459 -28.13608 -27.38024 -26.47215 -24.44005 -23.77276 -21.57075 -20.90337 -20.52211 -19.22497 -18.89962 -17.96990 -17.91194 -17.38472 -16.82043 -16.54175 -16.12255 -16.02020 -15.49537 -15.33323 -15.10356 -14.93623 -14.63452 -14.26638 -13.94809 -13.83733 -13.58780 -13.36588 -13.09213 -12.89394 -12.87739 -12.21761 -12.12148 -11.97542 -11.86060 -11.56436 -11.48236 -11.35037 -11.10654 -10.97912 -10.88827 -10.87437 -10.46220 -10.24221 -10.15003 -10.09740 -9.98902 -9.51163 -9.23317 -8.59935 -8.10947 -7.98196 -6.43993 -3.85054 2.01403 2.36561 2.40982 2.79060 3.18102 3.24277 3.28280 3.49186 3.85116 3.87427 4.09009 4.14853 4.27892 4.44570 4.50957 4.56966 4.66323 4.79148 4.89221 4.94322 5.03747 5.10795 5.14436 5.21490 5.24563 5.37691 5.39541 5.44780 5.47652 5.61671 5.72624 5.79764 5.89056 5.94420 6.17467 6.21198 6.26940 6.66000 6.92877 7.05936 7.12094 7.34154 7.40015 7.52540 8.02859 8.03393 8.58719 9.15280 9.51307 10.02832 10.73602 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024736 B = 0.001650 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.693781 B =16961.451886 C =17555.000708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.193 4.193 3 C 0.174 3.826 4 O -0.387 6.387 5 C 0.078 3.922 6 C -0.139 4.139 7 C 0.518 3.482 8 O -0.544 6.544 9 N -0.707 5.707 10 C 0.151 3.849 11 H 0.107 0.893 12 C 0.019 3.981 13 N -0.478 5.478 14 C 0.036 3.964 15 C 0.444 3.556 16 O -0.579 6.579 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.901 5.901 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.005 3.995 27 C 0.093 3.907 28 H 0.079 0.921 29 O -0.568 6.568 30 H 0.222 0.778 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.411 0.589 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.092 0.908 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.106 0.894 45 H 0.050 0.950 46 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.619 6.910 -14.166 26.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.193 4.193 3 C 0.098 3.902 4 O -0.307 6.307 5 C 0.001 3.999 6 C -0.179 4.179 7 C 0.304 3.696 8 O -0.422 6.422 9 N -0.360 5.360 10 C 0.045 3.955 11 H 0.125 0.875 12 C -0.110 4.110 13 N -0.203 5.203 14 C -0.096 4.096 15 C 0.229 3.771 16 O -0.463 6.463 17 N -0.200 5.200 18 C -0.430 4.430 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.123 4.123 27 C 0.033 3.967 28 H 0.097 0.903 29 O -0.374 6.374 30 H 0.239 0.761 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.248 0.752 38 H 0.109 0.891 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.110 0.890 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.124 0.876 45 H 0.068 0.932 46 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -20.600 7.039 -15.389 26.660 hybrid contribution -0.197 -0.378 1.813 1.862 sum -20.798 6.661 -13.576 25.714 Atomic orbital electron populations 1.25000 0.95917 1.00524 0.97815 1.22569 0.93920 1.00801 1.02037 1.19054 0.84615 1.00191 0.86309 1.87865 1.21768 1.88793 1.32253 1.22165 0.79707 1.01611 0.96382 1.21443 0.92546 1.05155 0.98756 1.20377 0.90003 0.76616 0.82629 1.90729 1.65249 1.48438 1.37776 1.45748 1.07284 1.67884 1.15080 1.21753 0.80261 0.94180 0.99261 0.87500 1.23616 0.92916 0.96520 0.97968 1.65120 1.33839 1.04274 1.17027 1.22074 0.97704 0.94631 0.95187 1.19648 0.87330 0.86299 0.83787 1.90495 1.60873 1.25356 1.69607 1.41846 1.26387 1.17947 1.33790 1.19647 1.03561 1.04210 1.15581 0.87954 1.25261 0.99429 0.95157 0.98011 1.69606 1.40782 1.08128 1.35745 0.85916 0.81218 0.77812 0.79253 1.19940 1.20969 1.19859 1.23934 0.99623 0.93538 0.95228 1.22872 0.86582 0.94351 0.92849 0.90277 1.86237 1.32935 1.63881 1.54373 0.76126 0.90586 0.90548 0.91941 0.91874 0.87880 0.87857 0.75187 0.89141 0.93282 0.93124 0.89019 0.77489 0.91800 0.87607 0.93185 0.76431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.22 19.25 29.55 0.57 -0.65 16 2 C -0.19 -1.64 13.73 -37.13 -0.51 -2.15 16 3 C 0.17 1.29 6.41 34.37 0.22 1.51 16 4 O -0.39 -3.58 10.30 -35.23 -0.36 -3.94 16 5 C 0.08 0.65 5.23 37.16 0.19 0.85 16 6 C -0.14 -1.08 6.07 -27.88 -0.17 -1.25 16 7 C 0.52 5.49 7.83 -10.99 -0.09 5.41 16 8 O -0.54 -7.65 15.63 5.56 0.09 -7.56 16 9 N -0.71 -7.11 4.85 -52.47 -0.25 -7.37 16 10 C 0.15 1.80 3.41 -66.55 -0.23 1.57 16 11 H 0.11 1.39 7.56 -51.93 -0.39 0.99 16 12 C 0.02 0.25 6.20 -2.18 -0.01 0.24 16 13 N -0.48 -7.74 5.06 -231.41 -1.17 -8.91 16 14 C 0.04 0.63 5.30 -4.98 -0.03 0.60 16 15 C 0.44 10.28 7.59 -10.98 -0.08 10.20 16 16 O -0.58 -15.21 14.42 5.55 0.08 -15.13 16 17 N -0.56 -14.08 5.29 -10.96 -0.06 -14.13 16 18 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 19 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 21 N -0.90 -24.29 13.05 55.50 0.72 -23.57 16 22 Si 0.93 20.83 29.55 -169.99 -5.02 15.80 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 C 0.01 0.08 5.53 -2.18 -0.01 0.06 16 27 C 0.09 1.05 4.43 -25.35 -0.11 0.94 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 29 O -0.57 -5.12 11.53 -35.23 -0.41 -5.53 16 30 H 0.22 0.70 7.80 -54.09 -0.42 0.28 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 33 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 34 H 0.06 0.54 8.10 -51.93 -0.42 0.11 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 0.68 8.14 -51.92 -0.42 0.25 16 37 H 0.41 3.58 7.26 -40.82 -0.30 3.29 16 38 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.05 0.62 7.91 -51.93 -0.41 0.21 16 40 H 0.05 0.81 7.88 -51.93 -0.41 0.40 16 41 H 0.09 1.49 8.13 -51.93 -0.42 1.07 16 42 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 43 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.11 1.80 6.91 -51.93 -0.36 1.44 16 45 H 0.05 0.71 7.76 -51.93 -0.40 0.31 16 46 H 0.39 2.22 9.11 45.56 0.41 2.63 16 LS Contribution 395.90 15.07 5.97 5.97 Total: -1.00 -34.37 395.90 -6.83 -41.19 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -5.91 Total: 13.75 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -0.50 Total: 9.43 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.76 Total: -53.98 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -0.60 Total: -32.16 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.37 -6.83 -41.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219613656.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.988 kcal (2) G-P(sol) polarization free energy of solvation -34.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds