Wall clock time and date at job start Wed Apr 1 2020 00:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 O 1.42905 * 109.47444 * 251.72990 * 3 2 1 5 5 C 1.42897 * 113.99939 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46666 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47178 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99992 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00130 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99989 * 179.97438 * 9 7 6 11 11 H 1.08998 * 110.36884 * 32.81972 * 10 9 7 12 12 C 1.54377 * 110.32451 * 270.63549 * 10 9 7 13 13 N 1.48562 * 104.59385 * 217.24799 * 12 10 9 14 14 C 1.46899 * 110.99570 * 159.03985 * 13 12 10 15 15 C 1.50701 * 109.46761 * 174.70728 * 14 13 12 16 16 O 1.21291 * 120.00352 * 0.02562 * 15 14 13 17 17 N 1.34778 * 119.99829 * 179.97438 * 15 14 13 18 18 C 1.37093 * 119.99912 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00388 * 0.02562 * 18 17 15 20 20 C 1.38953 * 120.00184 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99612 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00409 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47255 * 59.99437 * 22 20 18 24 24 H 1.48496 * 109.47606 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.46946 * 299.99788 * 22 20 18 26 26 C 1.48568 * 104.21841 * 39.48734 * 13 12 10 27 27 C 1.54259 * 110.32385 * 154.99651 * 10 9 7 28 28 H 1.08995 * 110.41781 * 237.84222 * 27 10 9 29 29 O 1.42903 * 110.32552 * 0.02562 * 27 10 9 30 30 H 4.38456 * 5.44442 * 179.97438 * 4 1 2 31 31 H 1.08993 * 109.47281 * 131.72551 * 3 2 1 32 32 H 1.09008 * 109.46948 * 11.72490 * 3 2 1 33 33 H 1.08993 * 109.47418 * 60.00027 * 5 4 3 34 34 H 1.09002 * 109.47137 * 299.99202 * 5 4 3 35 35 H 1.08997 * 109.47532 * 59.99277 * 6 5 4 36 36 H 1.09008 * 109.47140 * 299.99420 * 6 5 4 37 37 H 0.97002 * 120.00440 * 359.97438 * 9 7 6 38 38 H 1.09000 * 110.41059 * 98.47492 * 12 10 9 39 39 H 1.08997 * 110.51245 * 336.08255 * 12 10 9 40 40 H 1.08994 * 109.47553 * 294.70896 * 14 13 12 41 41 H 1.09004 * 109.47238 * 54.71022 * 14 13 12 42 42 H 0.97000 * 120.00203 * 0.02562 * 17 15 14 43 43 H 0.97003 * 119.99527 * 179.97438 * 21 20 18 44 44 H 1.09002 * 110.40652 * 201.73024 * 26 13 12 45 45 H 1.08999 * 110.51037 * 79.34722 * 26 13 12 46 46 H 0.96700 * 114.00311 * 177.08922 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1222 0.4232 1.2794 5 6 4.5467 0.4598 1.3863 6 6 4.9410 0.9240 2.7898 7 6 6.4433 0.9631 2.9025 8 8 7.1309 0.6501 1.9537 9 7 7.0227 1.3460 4.0575 10 6 8.4832 1.3835 4.1671 11 1 8.9288 1.6500 3.2088 12 6 9.0201 0.0180 4.6470 13 7 10.1507 0.3565 5.5494 14 6 10.4495 -0.7573 6.4594 15 6 11.6789 -0.4300 7.2672 16 8 12.2497 0.6273 7.1015 17 7 12.1435 -1.3117 8.1745 18 6 13.2616 -1.0137 8.9097 19 1 13.7698 -0.0723 8.7622 20 6 13.7410 -1.9230 9.8447 21 7 13.1223 -3.0683 10.0245 22 14 15.2640 -1.5167 10.8470 23 1 15.0218 -0.2831 11.6376 24 1 15.5659 -2.6424 11.7672 25 1 16.4148 -1.3012 9.9335 26 6 9.6736 1.5454 6.3019 27 6 8.9131 2.3883 5.2558 28 1 9.5692 3.1492 4.8332 29 8 7.7652 2.9979 5.8498 30 1 -1.0501 0.0001 -0.0002 31 1 3.0090 0.6847 -0.7669 32 1 3.0098 -1.0055 -0.2089 33 1 4.9488 1.1537 0.6482 34 1 4.9503 -0.5366 1.2060 35 1 4.5388 0.2305 3.5283 36 1 4.5375 1.9205 2.9697 37 1 6.4728 1.5967 4.8163 38 1 9.3729 -0.5706 3.8001 39 1 8.2484 -0.5258 5.1918 40 1 9.6051 -0.9149 7.1304 41 1 10.6264 -1.6630 5.8792 42 1 11.6868 -2.1571 8.3072 43 1 13.4572 -3.7032 10.6770 44 1 10.5184 2.1067 6.7011 45 1 9.0038 1.2441 7.1073 46 1 7.9725 3.6065 6.5721 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219613656.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:07 Heat of formation + Delta-G solvation = -123.942061 kcal Electronic energy + Delta-G solvation = -28384.643689 eV Core-core repulsion = 24082.359372 eV Total energy + Delta-G solvation = -4302.284317 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.40349 -40.39910 -39.48918 -38.91454 -36.87503 -35.91823 -35.25616 -34.44515 -33.29778 -32.70398 -31.30083 -29.16010 -28.23011 -27.73186 -26.07114 -24.60491 -22.78070 -21.79878 -21.41779 -20.99249 -19.88324 -19.43903 -18.74538 -18.20380 -17.79358 -17.44596 -17.39136 -16.85308 -16.59206 -16.40583 -16.29220 -16.06359 -15.89195 -15.75535 -15.16176 -15.02735 -14.81011 -14.35677 -14.17600 -14.07251 -13.70644 -13.59707 -13.43178 -13.20476 -12.96179 -12.70359 -12.54352 -12.52194 -12.47638 -12.42540 -12.12991 -12.02134 -11.54423 -11.47504 -11.45049 -11.05630 -10.99309 -10.57320 -10.36863 -10.12446 -10.01189 -9.47651 -8.46300 -5.95099 1.39916 1.42101 1.43207 1.52811 1.58420 1.82159 1.98830 2.04535 2.29094 2.71530 3.00926 3.15543 3.20042 3.31914 3.48710 3.61598 3.73198 3.78639 4.04970 4.06054 4.18606 4.21732 4.26496 4.31470 4.35116 4.42179 4.44870 4.49399 4.53818 4.64192 4.80626 4.84290 4.84993 4.90674 4.99697 5.03407 5.35303 5.40922 5.73446 5.79581 6.03456 6.06745 6.55311 6.59661 6.60040 6.75356 7.12669 7.23894 7.55737 8.11085 8.70824 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024736 B = 0.001650 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.693781 B =16961.451886 C =17555.000708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.239 4.239 3 C 0.167 3.833 4 O -0.401 6.401 5 C 0.079 3.921 6 C -0.130 4.130 7 C 0.518 3.482 8 O -0.581 6.581 9 N -0.697 5.697 10 C 0.154 3.846 11 H 0.096 0.904 12 C 0.026 3.974 13 N -0.501 5.501 14 C 0.048 3.952 15 C 0.443 3.557 16 O -0.614 6.614 17 N -0.573 5.573 18 C -0.334 4.334 19 H 0.080 0.920 20 C -0.012 4.012 21 N -0.921 5.921 22 Si 0.993 3.007 23 H -0.271 1.271 24 H -0.271 1.271 25 H -0.273 1.273 26 C 0.008 3.992 27 C 0.111 3.889 28 H 0.083 0.917 29 O -0.563 6.563 30 H 0.253 0.747 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.421 0.579 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.107 0.893 42 H 0.395 0.605 43 H 0.277 0.723 44 H 0.074 0.926 45 H 0.054 0.946 46 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.417 7.064 -14.013 28.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.239 4.239 3 C 0.092 3.908 4 O -0.321 6.321 5 C 0.003 3.997 6 C -0.170 4.170 7 C 0.306 3.694 8 O -0.462 6.462 9 N -0.350 5.350 10 C 0.048 3.952 11 H 0.114 0.886 12 C -0.103 4.103 13 N -0.226 5.226 14 C -0.083 4.083 15 C 0.230 3.770 16 O -0.500 6.500 17 N -0.211 5.211 18 C -0.463 4.463 19 H 0.098 0.902 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.816 3.184 23 H -0.196 1.196 24 H -0.196 1.196 25 H -0.198 1.198 26 C -0.120 4.120 27 C 0.051 3.949 28 H 0.101 0.899 29 O -0.371 6.371 30 H 0.269 0.731 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.259 0.741 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.125 0.875 42 H 0.229 0.771 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.073 0.927 46 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -22.439 7.201 -15.217 28.053 hybrid contribution 0.280 -0.390 1.724 1.790 sum -22.160 6.811 -13.493 26.824 Atomic orbital electron populations 1.25875 0.96847 0.99033 0.96186 1.23105 0.94896 1.02302 1.03603 1.19232 0.84534 1.01116 0.85917 1.87825 1.21952 1.88996 1.33349 1.22131 0.79493 1.01340 0.96768 1.21404 0.90212 1.06556 0.98815 1.20837 0.91023 0.75543 0.81983 1.90719 1.66306 1.50106 1.39032 1.45654 1.06474 1.67485 1.15387 1.21562 0.81341 0.93521 0.98799 0.88612 1.23576 0.92165 0.97414 0.97146 1.65026 1.35928 1.04331 1.17336 1.21920 0.95429 0.95706 0.95286 1.20623 0.88206 0.85184 0.82996 1.90472 1.62342 1.26747 1.70402 1.41912 1.26248 1.18503 1.34410 1.19632 1.05141 1.04114 1.17434 0.90187 1.26025 1.01937 0.94804 0.98392 1.69670 1.41806 1.08577 1.36083 0.84996 0.77588 0.77981 0.77821 1.19584 1.19586 1.19812 1.23854 0.98821 0.93179 0.96177 1.22556 0.86849 0.93878 0.91625 0.89933 1.86209 1.31661 1.64150 1.55084 0.73074 0.89419 0.89528 0.92250 0.92344 0.86277 0.86171 0.74067 0.89654 0.92102 0.90976 0.87452 0.77083 0.91329 0.90722 0.92747 0.74479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 19.25 74.32 1.43 -0.57 16 2 C -0.24 -3.87 13.73 31.12 0.43 -3.44 16 3 C 0.17 2.38 6.41 70.17 0.45 2.83 16 4 O -0.40 -7.01 10.30 -148.98 -1.53 -8.55 16 5 C 0.08 1.25 5.23 71.98 0.38 1.63 16 6 C -0.13 -1.76 6.07 29.85 0.18 -1.58 16 7 C 0.52 10.20 7.83 87.66 0.69 10.89 16 8 O -0.58 -15.97 15.63 -3.03 -0.05 -16.02 16 9 N -0.70 -12.61 4.85 -438.30 -2.13 -14.74 16 10 C 0.15 3.47 3.41 45.88 0.16 3.62 16 11 H 0.10 2.42 7.56 -2.39 -0.02 2.41 16 12 C 0.03 0.65 6.20 86.45 0.54 1.19 16 13 N -0.50 -15.92 5.06 -886.03 -4.49 -20.40 16 14 C 0.05 1.66 5.30 85.56 0.45 2.11 16 15 C 0.44 20.79 7.59 87.66 0.66 21.45 16 16 O -0.61 -33.13 14.42 -3.06 -0.04 -33.17 16 17 N -0.57 -29.15 5.29 -306.98 -1.62 -30.77 16 18 C -0.33 -18.76 9.68 84.04 0.81 -17.95 16 19 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 20 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 21 N -0.92 -49.36 13.05 21.66 0.28 -49.07 16 22 Si 0.99 42.53 29.55 68.60 2.03 44.56 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 24 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 C 0.01 0.23 5.53 86.45 0.48 0.71 16 27 C 0.11 2.35 4.43 31.49 0.14 2.49 16 28 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 29 O -0.56 -8.76 11.53 -148.98 -1.72 -10.47 16 30 H 0.25 0.94 7.80 -4.41 -0.03 0.90 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.06 0.95 8.10 -2.39 -0.02 0.94 16 34 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 35 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.12 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.42 6.15 7.26 -92.71 -0.67 5.47 16 38 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.06 1.40 7.91 -2.39 -0.02 1.38 16 40 H 0.07 2.19 7.88 -2.39 -0.02 2.17 16 41 H 0.11 3.36 8.13 -2.39 -0.02 3.34 16 42 H 0.40 19.16 7.90 -92.71 -0.73 18.43 16 43 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 44 H 0.07 2.60 6.91 -2.39 -0.02 2.58 16 45 H 0.05 1.47 7.76 -2.39 -0.02 1.45 16 46 H 0.40 3.62 9.11 -74.06 -0.67 2.94 16 Total: -1.00 -74.97 395.90 -3.06 -78.03 By element: Atomic # 1 Polarization: 38.44 SS G_CDS: -1.05 Total: 37.39 kcal Atomic # 6 Polarization: 15.96 SS G_CDS: 7.26 Total: 23.22 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -7.95 Total: -114.99 kcal Atomic # 8 Polarization: -64.87 SS G_CDS: -3.34 Total: -68.22 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -74.97 -3.06 -78.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219613656.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.910 kcal (2) G-P(sol) polarization free energy of solvation -74.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds