Wall clock time and date at job start Tue Mar 31 2020 22:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46842 * 2 1 4 4 C 1.53000 * 109.47393 * 239.99885 * 2 1 3 5 5 O 1.45202 * 109.46803 * 119.99736 * 2 1 3 6 6 C 1.34635 * 116.99977 * 60.00656 * 5 2 1 7 7 O 1.21500 * 120.00197 * 359.97438 * 6 5 2 8 8 N 1.34780 * 119.99795 * 179.97438 * 6 5 2 9 9 C 1.46497 * 120.00097 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.46981 * 325.00176 * 9 8 6 11 11 C 1.50695 * 109.47078 * 84.99788 * 9 8 6 12 12 H 1.08006 * 120.00448 * 240.00562 * 11 9 8 13 13 C 1.37879 * 120.00046 * 60.00027 * 11 9 8 14 14 N 1.31512 * 120.00192 * 0.02562 * 13 11 9 15 15 Si 1.86805 * 120.00279 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46815 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47196 * 120.00080 * 15 13 11 18 18 H 1.48498 * 109.47053 * 240.00443 * 15 13 11 19 19 C 1.50696 * 109.47467 * 205.00172 * 9 8 6 20 20 N 1.30277 * 126.28049 * 314.99646 * 19 9 8 21 21 N 1.28669 * 109.38135 * 179.73353 * 20 19 9 22 22 C 1.30281 * 109.37811 * 0.44438 * 21 20 19 23 23 C 1.50690 * 126.27838 * 179.82819 * 22 21 20 24 24 H 1.09005 * 110.43737 * 180.78570 * 23 22 21 25 25 C 1.54818 * 110.48893 * 303.46722 * 23 22 21 26 26 C 1.55000 * 102.09030 * 139.56157 * 25 23 22 27 27 O 1.44382 * 103.48861 * 322.97548 * 26 25 23 28 28 C 1.43745 * 106.97554 * 40.06459 * 27 26 25 29 29 O 1.34362 * 126.28333 * 135.00213 * 19 9 8 30 30 H 1.08992 * 109.47347 * 300.00131 * 1 2 3 31 31 H 1.09001 * 109.46986 * 60.00145 * 1 2 3 32 32 H 1.08998 * 109.46858 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47053 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47212 * 299.99717 * 3 2 1 35 35 H 1.09002 * 109.46773 * 60.00094 * 3 2 1 36 36 H 1.08998 * 109.47169 * 299.99871 * 4 2 1 37 37 H 1.09001 * 109.47079 * 60.00026 * 4 2 1 38 38 H 1.09003 * 109.47001 * 179.97438 * 4 2 1 39 39 H 0.97004 * 120.00194 * 359.97438 * 8 6 5 40 40 H 0.96997 * 120.00514 * 179.97438 * 14 13 11 41 41 H 1.08996 * 110.90598 * 257.75826 * 25 23 22 42 42 H 1.09001 * 110.90139 * 21.32930 * 25 23 22 43 43 H 1.08999 * 110.61711 * 204.48002 * 26 25 23 44 44 H 1.08997 * 110.62057 * 81.47966 * 26 25 23 45 45 H 1.08998 * 109.87927 * 92.91125 * 28 27 26 46 46 H 1.08998 * 109.87870 * 213.90748 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3384 7 8 0.9511 -2.5094 0.5041 8 7 2.0680 -2.6656 2.4168 9 6 1.6741 -4.0668 2.5833 10 1 0.6647 -4.2087 2.1971 11 6 2.6307 -4.9510 1.8258 12 1 2.2649 -5.5911 1.0365 13 6 3.9732 -4.9428 2.1402 14 7 4.4187 -4.1638 3.1014 15 14 5.1590 -6.0395 1.2016 16 1 4.4123 -6.8137 0.1778 17 1 6.1869 -5.2005 0.5348 18 1 5.8203 -6.9756 2.1458 19 6 1.7075 -4.4276 4.0461 20 7 2.6521 -4.1294 4.8922 21 7 2.3464 -4.5913 6.0536 22 6 1.2009 -5.2081 5.9857 23 6 0.4884 -5.8933 7.1231 24 1 -0.4445 -6.3372 6.7755 25 6 1.3987 -6.9699 7.7627 26 6 1.1076 -6.7851 9.2739 27 8 0.9539 -5.3565 9.4150 28 6 0.2184 -4.8981 8.2682 29 8 0.7687 -5.1160 4.7169 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1299 1.4426 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6768 -1.7489 -1.2492 37 1 1.6768 -0.2074 -2.1392 38 1 3.1301 -0.7208 -1.2494 39 1 2.6282 -2.2369 3.0827 40 1 5.3631 -4.1583 3.3229 41 1 1.1130 -7.9680 7.4307 42 1 2.4478 -6.7736 7.5413 43 1 1.9456 -7.1420 9.8726 44 1 0.1882 -7.2996 9.5534 45 1 -0.8473 -4.8756 8.4962 46 1 0.5575 -3.9020 7.9842 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255555863.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:03 Heat of formation + Delta-G solvation = -80.478350 kcal Electronic energy + Delta-G solvation = -30653.876521 eV Core-core repulsion = 26353.476932 eV Total energy + Delta-G solvation = -4300.399589 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.20526 -39.91330 -39.34243 -36.86601 -35.13435 -34.68879 -33.55288 -33.09256 -32.00776 -30.10617 -28.97702 -27.19598 -27.14196 -27.03901 -24.07956 -23.54516 -22.58962 -22.06889 -20.81946 -20.40717 -19.27153 -17.62355 -17.01543 -16.82667 -16.38707 -16.18628 -15.87322 -15.56850 -15.34173 -15.06511 -14.77728 -14.43965 -14.08559 -13.87852 -13.82132 -13.13995 -12.99457 -12.85122 -12.38847 -12.25655 -12.15956 -11.90749 -11.73260 -11.55747 -11.51554 -11.43183 -11.33601 -11.22868 -11.08459 -11.07676 -10.89887 -10.83528 -10.73898 -10.25947 -10.16592 -9.84061 -9.77684 -9.65200 -9.27340 -8.95436 -8.38927 -7.92860 -6.26244 -4.49834 2.03714 2.74171 3.13643 3.25358 3.28382 3.31412 3.54492 3.82717 3.86341 4.21832 4.41407 4.59403 4.77856 4.89281 4.97953 5.00608 5.05504 5.08098 5.09286 5.22814 5.34573 5.52408 5.58167 5.63357 5.67316 5.72254 5.78243 5.85224 5.91194 5.98388 6.02453 6.05532 6.18285 6.21373 6.22218 6.39873 6.48092 6.60998 6.71664 6.76493 6.83986 7.20053 7.54465 7.58849 7.68931 8.48960 8.66856 9.20993 9.40407 9.48122 10.68646 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011996 B = 0.003520 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.548017 B = 7953.281272 C = 9562.088775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.136 3.864 3 C -0.139 4.139 4 C -0.182 4.182 5 O -0.372 6.372 6 C 0.651 3.349 7 O -0.584 6.584 8 N -0.672 5.672 9 C 0.374 3.626 10 H 0.076 0.924 11 C -0.537 4.537 12 H 0.079 0.921 13 C 0.073 3.927 14 N -0.814 5.814 15 Si 0.899 3.101 16 H -0.269 1.269 17 H -0.279 1.279 18 H -0.282 1.282 19 C 0.190 3.810 20 N -0.231 5.231 21 N -0.284 5.284 22 C 0.108 3.892 23 C -0.016 4.016 24 H 0.107 0.893 25 C -0.146 4.146 26 C 0.049 3.951 27 O -0.370 6.370 28 C 0.062 3.938 29 O -0.238 6.238 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.404 0.596 40 H 0.271 0.729 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.062 0.938 45 H 0.069 0.931 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.481 1.887 3.713 8.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.239 4.239 5 O -0.288 6.288 6 C 0.404 3.596 7 O -0.475 6.475 8 N -0.330 5.330 9 C 0.271 3.729 10 H 0.094 0.906 11 C -0.576 4.576 12 H 0.097 0.903 13 C -0.139 4.139 14 N -0.445 5.445 15 Si 0.726 3.274 16 H -0.193 1.193 17 H -0.205 1.205 18 H -0.208 1.208 19 C -0.019 4.019 20 N -0.076 5.076 21 N -0.133 5.133 22 C -0.103 4.103 23 C -0.036 4.036 24 H 0.125 0.875 25 C -0.184 4.184 26 C -0.027 4.027 27 O -0.289 6.289 28 C -0.015 4.015 29 O -0.118 6.118 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.240 0.760 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.491 2.374 4.044 8.008 hybrid contribution 0.004 -1.140 -0.956 1.487 sum -6.487 1.234 3.088 7.290 Atomic orbital electron populations 1.22502 0.94646 1.05118 1.01551 1.21844 0.93897 0.91223 0.83132 1.21828 1.02145 0.93251 1.02382 1.22493 1.01489 1.03899 0.95989 1.86307 1.72161 1.24916 1.45396 1.17937 0.79208 0.79565 0.82927 1.90779 1.42948 1.70326 1.43456 1.45361 1.52716 1.12101 1.22799 1.16565 0.97988 0.79174 0.79144 0.90601 1.21257 0.91594 1.25898 1.18821 0.90297 1.25203 0.98683 0.95516 0.94476 1.69991 1.15516 1.34275 1.24710 0.86403 0.80741 0.80335 0.79929 1.19337 1.20476 1.20804 1.29249 0.82199 0.92015 0.98482 1.74901 1.20017 1.19135 0.93562 1.74429 1.10298 1.10341 1.18233 1.27068 0.95358 1.03896 0.83977 1.20798 0.98314 0.95198 0.89297 0.87513 1.23277 1.01720 0.98248 0.95147 1.23553 1.01282 0.82479 0.95430 1.88912 1.76270 1.21309 1.42377 1.23163 0.96239 0.98353 0.83771 1.84708 1.45912 1.60329 1.20831 0.92659 0.91922 0.89093 0.91677 0.90795 0.91841 0.88861 0.92080 0.92411 0.76050 0.91860 0.89460 0.88884 0.88564 0.91963 0.91310 0.88957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.66 8.37 37.16 0.31 -2.35 16 2 C 0.14 2.16 1.13 -90.62 -0.10 2.06 16 3 C -0.14 -1.71 8.85 37.16 0.33 -1.38 16 4 C -0.18 -2.87 8.37 37.16 0.31 -2.56 16 5 O -0.37 -7.35 9.94 -40.31 -0.40 -7.75 16 6 C 0.65 14.45 8.01 54.06 0.43 14.89 16 7 O -0.58 -13.55 11.54 -19.27 -0.22 -13.77 16 8 N -0.67 -15.56 4.48 -61.02 -0.27 -15.83 16 9 C 0.37 9.02 2.70 -70.24 -0.19 8.83 16 10 H 0.08 1.80 7.58 -51.93 -0.39 1.41 16 11 C -0.54 -13.94 8.86 -34.44 -0.31 -14.25 16 12 H 0.08 2.06 7.81 -52.48 -0.41 1.65 16 13 C 0.07 1.89 5.23 -17.82 -0.09 1.80 16 14 N -0.81 -21.36 9.92 55.43 0.55 -20.81 16 15 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 C 0.19 4.52 6.89 -12.94 -0.09 4.43 16 20 N -0.23 -5.69 9.54 32.55 0.31 -5.38 16 21 N -0.28 -6.34 12.03 32.55 0.39 -5.95 16 22 C 0.11 2.07 6.77 -12.94 -0.09 1.98 16 23 C -0.02 -0.21 3.58 -90.25 -0.32 -0.54 16 24 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 25 C -0.15 -1.76 6.70 -24.72 -0.17 -1.93 16 26 C 0.05 0.51 7.72 38.21 0.29 0.81 16 27 O -0.37 -5.08 11.52 -35.23 -0.41 -5.49 16 28 C 0.06 0.80 7.35 37.73 0.28 1.08 16 29 O -0.24 -5.09 10.87 5.39 0.06 -5.03 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.09 1.58 5.88 -51.93 -0.31 1.27 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 1.75 5.88 -51.93 -0.31 1.45 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.40 9.53 8.15 -40.82 -0.33 9.20 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.09 1.38 7.71 -51.93 -0.40 0.98 16 43 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.09 1.35 7.69 -51.93 -0.40 0.95 16 LS Contribution 377.96 15.07 5.70 5.70 Total: -1.00 -30.16 377.96 -5.47 -35.63 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -6.75 Total: 10.32 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 0.60 Total: 12.88 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 0.98 Total: -47.97 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.97 Total: -32.03 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.16 -5.47 -35.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255555863.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.844 kcal (2) G-P(sol) polarization free energy of solvation -30.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds