Wall clock time and date at job start Tue Mar 31 2020 22:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46842 * 2 1 4 4 C 1.53000 * 109.47393 * 239.99885 * 2 1 3 5 5 O 1.45202 * 109.46803 * 119.99736 * 2 1 3 6 6 C 1.34635 * 116.99977 * 60.00656 * 5 2 1 7 7 O 1.21500 * 120.00197 * 359.97438 * 6 5 2 8 8 N 1.34780 * 119.99795 * 179.97438 * 6 5 2 9 9 C 1.46497 * 120.00097 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.46981 * 325.00176 * 9 8 6 11 11 C 1.50695 * 109.47078 * 84.99788 * 9 8 6 12 12 H 1.08006 * 120.00448 * 240.00562 * 11 9 8 13 13 C 1.37879 * 120.00046 * 60.00027 * 11 9 8 14 14 N 1.31512 * 120.00192 * 0.02562 * 13 11 9 15 15 Si 1.86805 * 120.00279 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46815 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47196 * 120.00080 * 15 13 11 18 18 H 1.48498 * 109.47053 * 240.00443 * 15 13 11 19 19 C 1.50696 * 109.47467 * 205.00172 * 9 8 6 20 20 N 1.30277 * 126.28049 * 314.99646 * 19 9 8 21 21 N 1.28669 * 109.38135 * 179.73353 * 20 19 9 22 22 C 1.30281 * 109.37811 * 0.44438 * 21 20 19 23 23 C 1.50690 * 126.27838 * 179.82819 * 22 21 20 24 24 H 1.09005 * 110.43737 * 180.78570 * 23 22 21 25 25 C 1.54818 * 110.48893 * 303.46722 * 23 22 21 26 26 C 1.55000 * 102.09030 * 139.56157 * 25 23 22 27 27 O 1.44382 * 103.48861 * 322.97548 * 26 25 23 28 28 C 1.43745 * 106.97554 * 40.06459 * 27 26 25 29 29 O 1.34362 * 126.28333 * 135.00213 * 19 9 8 30 30 H 1.08992 * 109.47347 * 300.00131 * 1 2 3 31 31 H 1.09001 * 109.46986 * 60.00145 * 1 2 3 32 32 H 1.08998 * 109.46858 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47053 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47212 * 299.99717 * 3 2 1 35 35 H 1.09002 * 109.46773 * 60.00094 * 3 2 1 36 36 H 1.08998 * 109.47169 * 299.99871 * 4 2 1 37 37 H 1.09001 * 109.47079 * 60.00026 * 4 2 1 38 38 H 1.09003 * 109.47001 * 179.97438 * 4 2 1 39 39 H 0.97004 * 120.00194 * 359.97438 * 8 6 5 40 40 H 0.96997 * 120.00514 * 179.97438 * 14 13 11 41 41 H 1.08996 * 110.90598 * 257.75826 * 25 23 22 42 42 H 1.09001 * 110.90139 * 21.32930 * 25 23 22 43 43 H 1.08999 * 110.61711 * 204.48002 * 26 25 23 44 44 H 1.08997 * 110.62057 * 81.47966 * 26 25 23 45 45 H 1.08998 * 109.87927 * 92.91125 * 28 27 26 46 46 H 1.08998 * 109.87870 * 213.90748 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3384 7 8 0.9511 -2.5094 0.5041 8 7 2.0680 -2.6656 2.4168 9 6 1.6741 -4.0668 2.5833 10 1 0.6647 -4.2087 2.1971 11 6 2.6307 -4.9510 1.8258 12 1 2.2649 -5.5911 1.0365 13 6 3.9732 -4.9428 2.1402 14 7 4.4187 -4.1638 3.1014 15 14 5.1590 -6.0395 1.2016 16 1 4.4123 -6.8137 0.1778 17 1 6.1869 -5.2005 0.5348 18 1 5.8203 -6.9756 2.1458 19 6 1.7075 -4.4276 4.0461 20 7 2.6521 -4.1294 4.8922 21 7 2.3464 -4.5913 6.0536 22 6 1.2009 -5.2081 5.9857 23 6 0.4884 -5.8933 7.1231 24 1 -0.4445 -6.3372 6.7755 25 6 1.3987 -6.9699 7.7627 26 6 1.1076 -6.7851 9.2739 27 8 0.9539 -5.3565 9.4150 28 6 0.2184 -4.8981 8.2682 29 8 0.7687 -5.1160 4.7169 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1299 1.4426 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6768 -1.7489 -1.2492 37 1 1.6768 -0.2074 -2.1392 38 1 3.1301 -0.7208 -1.2494 39 1 2.6282 -2.2369 3.0827 40 1 5.3631 -4.1583 3.3229 41 1 1.1130 -7.9680 7.4307 42 1 2.4478 -6.7736 7.5413 43 1 1.9456 -7.1420 9.8726 44 1 0.1882 -7.2996 9.5534 45 1 -0.8473 -4.8756 8.4962 46 1 0.5575 -3.9020 7.9842 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255555863.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:02 Heat of formation + Delta-G solvation = -104.700145 kcal Electronic energy + Delta-G solvation = -30654.926857 eV Core-core repulsion = 26353.476932 eV Total energy + Delta-G solvation = -4301.449925 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.92333 -41.52125 -40.34074 -38.48264 -36.87853 -36.46174 -34.99672 -34.33033 -33.85716 -31.47164 -30.27703 -28.92999 -28.26831 -28.21135 -25.89864 -24.98894 -23.83940 -23.43033 -22.48634 -21.74609 -20.85587 -19.26678 -18.79900 -18.19493 -17.98810 -17.49227 -17.20516 -16.99670 -16.91573 -16.61205 -16.14176 -16.05974 -15.52502 -15.25682 -15.11416 -14.73945 -14.41966 -14.14713 -13.93183 -13.29582 -13.24370 -13.15775 -13.07275 -12.94238 -12.89153 -12.77315 -12.75762 -12.73362 -12.54083 -12.44828 -12.40595 -12.22426 -12.13893 -12.02427 -11.92319 -11.39534 -11.23793 -11.02343 -10.82562 -10.71485 -10.11932 -9.77451 -8.21468 -6.51723 0.38858 1.13261 1.32557 1.37433 1.47473 1.69203 1.83949 2.13034 2.32384 2.83748 2.97198 3.13640 3.47796 3.62298 3.74977 3.87532 3.88479 3.90444 3.95503 4.05074 4.07878 4.27500 4.39828 4.58164 4.66277 4.68501 4.68979 4.75752 4.81393 4.82866 4.83784 4.86346 4.89214 4.92796 4.95465 5.01035 5.08532 5.16144 5.39063 5.42724 5.55326 5.60721 5.72219 5.81868 5.85571 6.50018 6.82050 7.22109 7.65571 7.73535 8.70967 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011996 B = 0.003520 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.548017 B = 7953.281272 C = 9562.088775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.118 3.882 3 C -0.132 4.132 4 C -0.178 4.178 5 O -0.379 6.379 6 C 0.651 3.349 7 O -0.597 6.597 8 N -0.675 5.675 9 C 0.378 3.622 10 H 0.071 0.929 11 C -0.558 4.558 12 H 0.068 0.932 13 C 0.039 3.961 14 N -0.829 5.829 15 Si 0.953 3.047 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.282 1.282 19 C 0.175 3.825 20 N -0.252 5.252 21 N -0.321 5.321 22 C 0.135 3.865 23 C -0.021 4.021 24 H 0.143 0.857 25 C -0.144 4.144 26 C 0.052 3.948 27 O -0.395 6.395 28 C 0.066 3.934 29 O -0.241 6.241 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.096 0.904 38 H 0.051 0.949 39 H 0.400 0.600 40 H 0.268 0.732 41 H 0.115 0.885 42 H 0.058 0.942 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.107 0.893 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.706 1.857 4.066 9.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.082 3.918 3 C -0.189 4.189 4 C -0.235 4.235 5 O -0.295 6.295 6 C 0.404 3.596 7 O -0.489 6.489 8 N -0.332 5.332 9 C 0.275 3.725 10 H 0.088 0.912 11 C -0.597 4.597 12 H 0.086 0.914 13 C -0.171 4.171 14 N -0.461 5.461 15 Si 0.778 3.222 16 H -0.192 1.192 17 H -0.202 1.202 18 H -0.207 1.207 19 C -0.036 4.036 20 N -0.097 5.097 21 N -0.168 5.168 22 C -0.077 4.077 23 C -0.041 4.041 24 H 0.161 0.839 25 C -0.183 4.183 26 C -0.024 4.024 27 O -0.315 6.315 28 C -0.012 4.012 29 O -0.121 6.121 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.126 0.874 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.115 0.885 38 H 0.070 0.930 39 H 0.235 0.765 40 H 0.077 0.923 41 H 0.134 0.866 42 H 0.077 0.923 43 H 0.125 0.875 44 H 0.116 0.884 45 H 0.125 0.875 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.709 2.364 4.400 9.186 hybrid contribution 0.293 -1.104 -1.012 1.526 sum -7.416 1.260 3.388 8.250 Atomic orbital electron populations 1.22439 0.93703 1.03613 1.03489 1.22438 0.94956 0.92736 0.81658 1.21860 1.02049 0.90607 1.04363 1.22444 1.01056 1.02310 0.97666 1.86316 1.72225 1.23457 1.47463 1.17968 0.78906 0.80367 0.82339 1.90776 1.43452 1.71004 1.43712 1.45191 1.52953 1.11908 1.23141 1.16369 0.97232 0.79387 0.79516 0.91155 1.21359 0.92463 1.26527 1.19354 0.91364 1.25752 0.99714 0.96564 0.95117 1.70108 1.15315 1.35151 1.25503 0.85582 0.78925 0.78887 0.78818 1.19157 1.20217 1.20742 1.28986 0.82871 0.93224 0.98523 1.74821 1.20655 1.19783 0.94432 1.74363 1.12292 1.12514 1.17609 1.28280 0.94187 1.01072 0.84129 1.21348 0.99546 0.95650 0.87545 0.83876 1.23304 0.99359 0.99039 0.96560 1.23774 1.03513 0.81051 0.94039 1.88888 1.76757 1.23382 1.42435 1.23183 0.98077 0.96674 0.83232 1.84713 1.45610 1.60103 1.21671 0.92102 0.88577 0.92229 0.91900 0.87361 0.91268 0.92360 0.88507 0.93008 0.76501 0.92252 0.86640 0.92282 0.87532 0.88414 0.87518 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.93 8.37 71.98 0.60 -4.32 16 2 C 0.12 3.63 1.13 -10.79 -0.01 3.62 16 3 C -0.13 -2.90 8.85 71.98 0.64 -2.27 16 4 C -0.18 -5.48 8.37 71.98 0.60 -4.87 16 5 O -0.38 -15.17 9.94 -55.44 -0.55 -15.72 16 6 C 0.65 29.87 8.01 129.79 1.04 30.91 16 7 O -0.60 -28.73 11.54 19.84 0.23 -28.50 16 8 N -0.67 -32.56 4.48 -577.37 -2.58 -35.14 16 9 C 0.38 19.00 2.70 43.50 0.12 19.12 16 10 H 0.07 3.51 7.58 -2.39 -0.02 3.49 16 11 C -0.56 -29.99 8.86 25.60 0.23 -29.77 16 12 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 13 C 0.04 2.04 5.23 84.66 0.44 2.48 16 14 N -0.83 -44.84 9.92 21.45 0.21 -44.63 16 15 Si 0.95 42.84 29.54 68.60 2.03 44.87 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 17 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 C 0.18 8.59 6.89 88.34 0.61 9.20 16 20 N -0.25 -12.85 9.54 -165.50 -1.58 -14.43 16 21 N -0.32 -14.68 12.03 -165.50 -1.99 -16.67 16 22 C 0.13 5.15 6.77 88.34 0.60 5.75 16 23 C -0.02 -0.52 3.58 -10.55 -0.04 -0.56 16 24 H 0.14 2.60 8.14 -2.38 -0.02 2.58 16 25 C -0.14 -3.18 6.70 31.90 0.21 -2.97 16 26 C 0.05 0.93 7.72 72.67 0.56 1.49 16 27 O -0.40 -10.08 11.52 -148.98 -1.72 -11.80 16 28 C 0.07 1.56 7.35 72.35 0.53 2.09 16 29 O -0.24 -10.41 10.87 -3.64 -0.04 -10.45 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.06 2.07 5.88 -2.39 -0.01 2.06 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 36 H 0.06 2.23 5.88 -2.39 -0.01 2.21 16 37 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.40 19.78 8.15 -92.71 -0.76 19.03 16 40 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 41 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.06 1.73 7.71 -2.39 -0.02 1.71 16 43 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.07 1.89 7.69 -2.39 -0.02 1.88 16 Total: -1.00 -69.27 377.96 0.40 -68.87 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: 0.26 Total: 33.70 kcal Atomic # 6 Polarization: 23.77 SS G_CDS: 6.13 Total: 29.90 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -5.94 Total: -110.87 kcal Atomic # 8 Polarization: -64.39 SS G_CDS: -2.08 Total: -66.47 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -69.27 0.40 -68.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255555863.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.830 kcal (2) G-P(sol) polarization free energy of solvation -69.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds