Wall clock time and date at job start Tue Mar 31 2020 22:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46997 * 2 1 4 4 C 1.52998 * 109.47021 * 239.99781 * 2 1 3 5 5 O 1.45205 * 109.46911 * 119.99874 * 2 1 3 6 6 C 1.34636 * 116.99806 * 60.00322 * 5 2 1 7 7 O 1.21513 * 120.00153 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99531 * 179.97438 * 6 5 2 9 9 C 1.46499 * 119.99665 * 179.72227 * 8 6 5 10 10 H 1.08999 * 109.47228 * 325.27715 * 9 8 6 11 11 C 1.50698 * 109.47509 * 85.27815 * 9 8 6 12 12 H 1.07999 * 120.00547 * 240.00168 * 11 9 8 13 13 C 1.37886 * 119.99733 * 59.99624 * 11 9 8 14 14 N 1.31508 * 119.99868 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 119.99919 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47076 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47257 * 119.99925 * 15 13 11 18 18 H 1.48505 * 109.46815 * 240.00136 * 15 13 11 19 19 C 1.50706 * 109.47303 * 205.27741 * 9 8 6 20 20 N 1.30277 * 126.28085 * 315.02905 * 19 9 8 21 21 N 1.28665 * 109.37964 * 179.97438 * 20 19 9 22 22 C 1.30278 * 109.38091 * 0.02562 * 21 20 19 23 23 C 1.50694 * 126.28015 * 179.97438 * 22 21 20 24 24 H 1.09004 * 110.45764 * 182.57682 * 23 22 21 25 25 C 1.54508 * 110.51222 * 59.97259 * 23 22 21 26 26 C 1.54482 * 104.06658 * 241.35210 * 25 23 22 27 27 O 1.44434 * 104.79843 * 23.97845 * 26 25 23 28 28 C 1.44425 * 105.27239 * 319.48754 * 27 26 25 29 29 O 1.34360 * 107.43541 * 359.75180 * 22 21 20 30 30 H 1.08999 * 109.46874 * 299.99879 * 1 2 3 31 31 H 1.08996 * 109.47160 * 59.99677 * 1 2 3 32 32 H 1.08994 * 109.47124 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47127 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46984 * 299.99604 * 3 2 1 35 35 H 1.08999 * 109.47210 * 60.00327 * 3 2 1 36 36 H 1.09000 * 109.47347 * 300.00334 * 4 2 1 37 37 H 1.09001 * 109.46931 * 59.99857 * 4 2 1 38 38 H 1.09004 * 109.46918 * 179.97438 * 4 2 1 39 39 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 40 40 H 0.96998 * 120.00249 * 180.02562 * 14 13 11 41 41 H 1.08997 * 110.51057 * 0.02562 * 25 23 22 42 42 H 1.09000 * 110.51394 * 122.57399 * 25 23 22 43 43 H 1.09004 * 110.37055 * 142.80598 * 26 25 23 44 44 H 1.08995 * 110.37396 * 265.04102 * 26 25 23 45 45 H 1.09003 * 110.37271 * 281.67851 * 28 27 26 46 46 H 1.09005 * 110.36773 * 159.34389 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3383 7 8 0.9509 -2.5095 0.5040 8 7 2.0680 -2.6657 2.4167 9 6 1.6694 -4.0652 2.5860 10 1 0.6606 -4.2051 2.1978 11 6 2.6251 -4.9544 1.8331 12 1 2.2592 -5.5955 1.0447 13 6 3.9669 -4.9494 2.1507 14 7 4.4125 -4.1691 3.1109 15 14 5.1517 -6.0511 1.2170 16 1 4.4051 -6.8260 0.1936 17 1 6.1836 -5.2163 0.5510 18 1 5.8083 -6.9873 2.1645 19 6 1.6984 -4.4223 4.0498 20 7 2.6417 -4.1242 4.8975 21 7 2.3344 -4.5866 6.0582 22 6 1.1849 -5.1960 5.9904 23 6 0.4679 -5.8765 7.1277 24 1 -0.4523 -6.3417 6.7741 25 6 0.1647 -4.8673 8.2578 26 6 0.9348 -5.4248 9.4755 27 8 1.9917 -6.2286 8.9072 28 6 1.3852 -6.9243 7.7964 29 8 0.7537 -5.1020 4.7213 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2492 37 1 1.6766 -0.2075 -2.1392 38 1 3.1300 -0.7209 -1.2494 39 1 2.6276 -2.2368 3.0830 40 1 5.3564 -4.1653 3.3341 41 1 0.5331 -3.8761 7.9936 42 1 -0.9053 -4.8336 8.4628 43 1 1.3535 -4.6093 10.0653 44 1 0.2778 -6.0391 10.0911 45 1 0.7977 -7.7702 8.1535 46 1 2.1499 -7.2608 7.0964 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255555864.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:07 Heat of formation + Delta-G solvation = -79.520957 kcal Electronic energy + Delta-G solvation = -30737.106338 eV Core-core repulsion = 26436.748265 eV Total energy + Delta-G solvation = -4300.358073 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.15900 -39.90416 -39.28708 -36.85223 -35.08700 -34.65611 -33.54445 -32.98845 -31.98910 -30.06540 -28.93367 -27.18017 -27.13906 -27.03563 -24.08741 -23.58074 -22.50451 -22.05438 -20.77017 -20.35485 -19.26154 -17.60423 -16.90770 -16.86033 -16.25542 -16.13690 -15.86039 -15.60842 -15.33494 -15.12174 -14.73703 -14.37947 -14.09411 -13.88706 -13.83176 -13.10577 -12.98317 -12.80777 -12.36641 -12.22752 -12.08666 -11.90213 -11.57035 -11.55460 -11.48734 -11.42308 -11.29531 -11.21320 -11.08309 -11.06040 -10.88262 -10.83037 -10.68696 -10.23316 -10.14318 -9.85691 -9.78843 -9.61035 -9.26148 -8.93216 -8.35320 -7.91193 -6.23790 -4.47431 2.08617 2.76681 3.16071 3.27563 3.30669 3.33956 3.59036 3.86538 3.93371 4.24093 4.45238 4.60316 4.82037 4.91262 5.00756 5.03500 5.05805 5.08341 5.13986 5.23310 5.35708 5.49553 5.57042 5.67465 5.68826 5.74995 5.78461 5.83563 5.91303 5.98174 5.98757 6.06017 6.18567 6.21997 6.23858 6.46068 6.51004 6.61482 6.72572 6.77585 6.86802 7.21000 7.55999 7.61154 7.71303 8.50810 8.68592 9.23421 9.42611 9.52488 10.71102 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011967 B = 0.003593 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.159326 B = 7791.770939 C = 9373.118840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.137 3.863 3 C -0.139 4.139 4 C -0.182 4.182 5 O -0.372 6.372 6 C 0.651 3.349 7 O -0.584 6.584 8 N -0.671 5.671 9 C 0.374 3.626 10 H 0.075 0.925 11 C -0.538 4.538 12 H 0.079 0.921 13 C 0.073 3.927 14 N -0.813 5.813 15 Si 0.899 3.101 16 H -0.269 1.269 17 H -0.279 1.279 18 H -0.282 1.282 19 C 0.188 3.812 20 N -0.232 5.232 21 N -0.278 5.278 22 C 0.106 3.894 23 C -0.016 4.016 24 H 0.108 0.892 25 C -0.144 4.144 26 C 0.048 3.952 27 O -0.360 6.360 28 C 0.060 3.940 29 O -0.239 6.239 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.404 0.596 40 H 0.271 0.729 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.059 0.941 45 H 0.072 0.928 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.530 3.311 4.499 10.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.239 4.239 5 O -0.288 6.288 6 C 0.403 3.597 7 O -0.475 6.475 8 N -0.329 5.329 9 C 0.272 3.728 10 H 0.093 0.907 11 C -0.576 4.576 12 H 0.097 0.903 13 C -0.139 4.139 14 N -0.444 5.444 15 Si 0.726 3.274 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.208 1.208 19 C -0.021 4.021 20 N -0.077 5.077 21 N -0.127 5.127 22 C -0.105 4.105 23 C -0.036 4.036 24 H 0.126 0.874 25 C -0.182 4.182 26 C -0.029 4.029 27 O -0.279 6.279 28 C -0.017 4.017 29 O -0.119 6.119 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.239 0.761 40 H 0.081 0.919 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.112 0.888 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.385 3.644 4.733 9.498 hybrid contribution -0.181 -0.928 -0.817 1.249 sum -7.566 2.717 3.916 8.942 Atomic orbital electron populations 1.22502 0.94661 1.05119 1.01535 1.21840 0.93887 0.91219 0.83148 1.21828 1.02148 0.93259 1.02369 1.22494 1.01493 1.03906 0.95983 1.86308 1.72177 1.24927 1.45386 1.17950 0.79208 0.79555 0.82972 1.90782 1.42968 1.70325 1.43470 1.45372 1.52602 1.12195 1.22751 1.16560 0.97913 0.79199 0.79161 0.90661 1.21250 0.91673 1.25687 1.18994 0.90318 1.25201 0.98680 0.95538 0.94455 1.69989 1.15528 1.34249 1.24647 0.86406 0.80743 0.80369 0.79907 1.19352 1.20496 1.20776 1.29233 0.82178 0.92233 0.98486 1.74910 1.20182 1.19000 0.93649 1.74470 1.10097 1.10083 1.18014 1.27112 0.95286 1.04160 0.83937 1.20789 0.98088 0.95516 0.89251 0.87417 1.23044 1.01336 1.00124 0.93689 1.23390 0.89618 0.94762 0.95169 1.89219 1.32705 1.60610 1.45320 1.23407 0.96483 0.93188 0.88657 1.84704 1.45655 1.60737 1.20838 0.92677 0.91926 0.89089 0.91675 0.90799 0.91853 0.88853 0.92086 0.92407 0.76063 0.91858 0.89614 0.89642 0.88849 0.92235 0.91027 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 8.37 37.16 0.31 -2.36 16 2 C 0.14 2.17 1.13 -90.62 -0.10 2.07 16 3 C -0.14 -1.71 8.85 37.16 0.33 -1.38 16 4 C -0.18 -2.88 8.37 37.16 0.31 -2.57 16 5 O -0.37 -7.38 9.94 -40.31 -0.40 -7.78 16 6 C 0.65 14.52 8.02 54.06 0.43 14.95 16 7 O -0.58 -13.62 11.54 -19.28 -0.22 -13.84 16 8 N -0.67 -15.65 4.47 -61.01 -0.27 -15.92 16 9 C 0.37 9.10 2.70 -70.23 -0.19 8.91 16 10 H 0.08 1.80 7.57 -51.93 -0.39 1.41 16 11 C -0.54 -14.06 8.86 -34.44 -0.31 -14.36 16 12 H 0.08 2.07 7.81 -52.49 -0.41 1.66 16 13 C 0.07 1.91 5.23 -17.82 -0.09 1.82 16 14 N -0.81 -21.56 9.93 55.43 0.55 -21.01 16 15 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 C 0.19 4.52 6.89 -12.94 -0.09 4.43 16 20 N -0.23 -5.79 9.54 32.55 0.31 -5.47 16 21 N -0.28 -6.31 12.22 32.55 0.40 -5.91 16 22 C 0.11 2.06 6.74 -12.94 -0.09 1.97 16 23 C -0.02 -0.22 3.65 -90.21 -0.33 -0.55 16 24 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 25 C -0.14 -1.64 6.73 -25.16 -0.17 -1.81 16 26 C 0.05 0.52 7.63 37.94 0.29 0.81 16 27 O -0.36 -5.32 11.65 -35.23 -0.41 -5.73 16 28 C 0.06 0.79 7.17 37.93 0.27 1.06 16 29 O -0.24 -5.17 10.87 5.40 0.06 -5.11 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.58 5.88 -51.93 -0.31 1.28 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 1.76 5.88 -51.93 -0.31 1.46 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.40 9.60 8.15 -40.82 -0.33 9.26 16 40 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.09 1.16 7.73 -51.93 -0.40 0.76 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.10 1.46 7.86 -51.93 -0.41 1.05 16 LS Contribution 378.26 15.07 5.70 5.70 Total: -1.00 -30.82 378.26 -5.49 -36.31 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -6.76 Total: 10.11 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: 0.58 Total: 12.99 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.99 Total: -48.31 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.97 Total: -32.47 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.82 -5.49 -36.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255555864.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.209 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds