Wall clock time and date at job start Tue Mar 31 2020 22:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46997 * 2 1 4 4 C 1.52998 * 109.47021 * 239.99781 * 2 1 3 5 5 O 1.45205 * 109.46911 * 119.99874 * 2 1 3 6 6 C 1.34636 * 116.99806 * 60.00322 * 5 2 1 7 7 O 1.21513 * 120.00153 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99531 * 179.97438 * 6 5 2 9 9 C 1.46499 * 119.99665 * 179.72227 * 8 6 5 10 10 H 1.08999 * 109.47228 * 325.27715 * 9 8 6 11 11 C 1.50698 * 109.47509 * 85.27815 * 9 8 6 12 12 H 1.07999 * 120.00547 * 240.00168 * 11 9 8 13 13 C 1.37886 * 119.99733 * 59.99624 * 11 9 8 14 14 N 1.31508 * 119.99868 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 119.99919 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47076 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47257 * 119.99925 * 15 13 11 18 18 H 1.48505 * 109.46815 * 240.00136 * 15 13 11 19 19 C 1.50706 * 109.47303 * 205.27741 * 9 8 6 20 20 N 1.30277 * 126.28085 * 315.02905 * 19 9 8 21 21 N 1.28665 * 109.37964 * 179.97438 * 20 19 9 22 22 C 1.30278 * 109.38091 * 0.02562 * 21 20 19 23 23 C 1.50694 * 126.28015 * 179.97438 * 22 21 20 24 24 H 1.09004 * 110.45764 * 182.57682 * 23 22 21 25 25 C 1.54508 * 110.51222 * 59.97259 * 23 22 21 26 26 C 1.54482 * 104.06658 * 241.35210 * 25 23 22 27 27 O 1.44434 * 104.79843 * 23.97845 * 26 25 23 28 28 C 1.44425 * 105.27239 * 319.48754 * 27 26 25 29 29 O 1.34360 * 107.43541 * 359.75180 * 22 21 20 30 30 H 1.08999 * 109.46874 * 299.99879 * 1 2 3 31 31 H 1.08996 * 109.47160 * 59.99677 * 1 2 3 32 32 H 1.08994 * 109.47124 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47127 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46984 * 299.99604 * 3 2 1 35 35 H 1.08999 * 109.47210 * 60.00327 * 3 2 1 36 36 H 1.09000 * 109.47347 * 300.00334 * 4 2 1 37 37 H 1.09001 * 109.46931 * 59.99857 * 4 2 1 38 38 H 1.09004 * 109.46918 * 179.97438 * 4 2 1 39 39 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 40 40 H 0.96998 * 120.00249 * 180.02562 * 14 13 11 41 41 H 1.08997 * 110.51057 * 0.02562 * 25 23 22 42 42 H 1.09000 * 110.51394 * 122.57399 * 25 23 22 43 43 H 1.09004 * 110.37055 * 142.80598 * 26 25 23 44 44 H 1.08995 * 110.37396 * 265.04102 * 26 25 23 45 45 H 1.09003 * 110.37271 * 281.67851 * 28 27 26 46 46 H 1.09005 * 110.36773 * 159.34389 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3383 7 8 0.9509 -2.5095 0.5040 8 7 2.0680 -2.6657 2.4167 9 6 1.6694 -4.0652 2.5860 10 1 0.6606 -4.2051 2.1978 11 6 2.6251 -4.9544 1.8331 12 1 2.2592 -5.5955 1.0447 13 6 3.9669 -4.9494 2.1507 14 7 4.4125 -4.1691 3.1109 15 14 5.1517 -6.0511 1.2170 16 1 4.4051 -6.8260 0.1936 17 1 6.1836 -5.2163 0.5510 18 1 5.8083 -6.9873 2.1645 19 6 1.6984 -4.4223 4.0498 20 7 2.6417 -4.1242 4.8975 21 7 2.3344 -4.5866 6.0582 22 6 1.1849 -5.1960 5.9904 23 6 0.4679 -5.8765 7.1277 24 1 -0.4523 -6.3417 6.7741 25 6 0.1647 -4.8673 8.2578 26 6 0.9348 -5.4248 9.4755 27 8 1.9917 -6.2286 8.9072 28 6 1.3852 -6.9243 7.7964 29 8 0.7537 -5.1020 4.7213 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2492 37 1 1.6766 -0.2075 -2.1392 38 1 3.1300 -0.7209 -1.2494 39 1 2.6276 -2.2368 3.0830 40 1 5.3564 -4.1653 3.3341 41 1 0.5331 -3.8761 7.9936 42 1 -0.9053 -4.8336 8.4628 43 1 1.3535 -4.6093 10.0653 44 1 0.2778 -6.0391 10.0911 45 1 0.7977 -7.7702 8.1535 46 1 2.1499 -7.2608 7.0964 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255555864.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:06 Heat of formation + Delta-G solvation = -104.589434 kcal Electronic energy + Delta-G solvation = -30738.193389 eV Core-core repulsion = 26436.748265 eV Total energy + Delta-G solvation = -4301.445124 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.89131 -41.52085 -40.29966 -38.47886 -36.84830 -36.44714 -34.99601 -34.22877 -33.85094 -31.45407 -30.22287 -28.92458 -28.26997 -28.21286 -25.89954 -25.02854 -23.81312 -23.42229 -22.46140 -21.66045 -20.85435 -19.25899 -18.79228 -18.20226 -17.86754 -17.47319 -17.18507 -17.02520 -16.87412 -16.58687 -16.23224 -16.01811 -15.52345 -15.24870 -15.14477 -14.74898 -14.43199 -14.15288 -13.84802 -13.24898 -13.18745 -13.14193 -13.07637 -12.90661 -12.85873 -12.77103 -12.75893 -12.56991 -12.48527 -12.45710 -12.40490 -12.21642 -12.14574 -11.98224 -11.93726 -11.37004 -11.23950 -11.01825 -10.83350 -10.76484 -10.09795 -9.77063 -8.21084 -6.51333 0.42305 1.14889 1.32822 1.37329 1.47480 1.72435 1.85998 2.13176 2.32579 2.92486 2.99009 3.14998 3.52230 3.63902 3.76056 3.87459 3.90183 3.94712 3.99993 4.04925 4.15666 4.27761 4.42097 4.59282 4.66038 4.67153 4.68780 4.73878 4.82647 4.83641 4.85290 4.89538 4.89648 4.95282 4.96278 5.02853 5.08834 5.16034 5.38905 5.42722 5.55495 5.60694 5.72716 5.81902 5.86592 6.50213 6.82231 7.22469 7.66286 7.76675 8.71248 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011967 B = 0.003593 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.159326 B = 7791.770939 C = 9373.118840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.118 3.882 3 C -0.132 4.132 4 C -0.178 4.178 5 O -0.379 6.379 6 C 0.651 3.349 7 O -0.598 6.598 8 N -0.674 5.674 9 C 0.379 3.621 10 H 0.070 0.930 11 C -0.559 4.559 12 H 0.068 0.932 13 C 0.038 3.962 14 N -0.829 5.829 15 Si 0.952 3.048 16 H -0.267 1.267 17 H -0.276 1.276 18 H -0.283 1.283 19 C 0.173 3.827 20 N -0.254 5.254 21 N -0.317 5.317 22 C 0.132 3.868 23 C -0.023 4.023 24 H 0.145 0.855 25 C -0.137 4.137 26 C 0.045 3.955 27 O -0.396 6.396 28 C 0.062 3.938 29 O -0.243 6.243 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.096 0.904 38 H 0.051 0.949 39 H 0.400 0.600 40 H 0.267 0.733 41 H 0.057 0.943 42 H 0.127 0.873 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.118 0.882 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.037 3.642 5.072 11.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.082 3.918 3 C -0.189 4.189 4 C -0.235 4.235 5 O -0.295 6.295 6 C 0.404 3.596 7 O -0.490 6.490 8 N -0.331 5.331 9 C 0.276 3.724 10 H 0.088 0.912 11 C -0.597 4.597 12 H 0.086 0.914 13 C -0.172 4.172 14 N -0.460 5.460 15 Si 0.778 3.222 16 H -0.191 1.191 17 H -0.202 1.202 18 H -0.208 1.208 19 C -0.038 4.038 20 N -0.099 5.099 21 N -0.164 5.164 22 C -0.079 4.079 23 C -0.043 4.043 24 H 0.163 0.837 25 C -0.176 4.176 26 C -0.031 4.031 27 O -0.315 6.315 28 C -0.015 4.015 29 O -0.123 6.123 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.126 0.874 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.115 0.885 38 H 0.070 0.930 39 H 0.235 0.765 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.145 0.855 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.135 0.865 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.888 4.001 5.309 11.099 hybrid contribution 0.182 -0.987 -0.936 1.373 sum -8.706 3.014 4.373 10.198 Atomic orbital electron populations 1.22439 0.93705 1.03609 1.03496 1.22438 0.94957 0.92739 0.81653 1.21861 1.02050 0.90595 1.04369 1.22446 1.01059 1.02312 0.97678 1.86316 1.72236 1.23439 1.47467 1.17976 0.78902 0.80369 0.82366 1.90779 1.43469 1.71011 1.43719 1.45191 1.52854 1.11986 1.23104 1.16359 0.97140 0.79429 0.79514 0.91221 1.21357 0.92538 1.26317 1.19516 0.91372 1.25754 0.99725 0.96603 0.95091 1.70108 1.15295 1.35164 1.25463 0.85585 0.78948 0.78903 0.78800 1.19107 1.20154 1.20844 1.28975 0.82859 0.93479 0.98531 1.74823 1.20831 1.19670 0.94532 1.74399 1.12155 1.12398 1.17429 1.28423 0.94138 1.01207 0.84135 1.21381 0.98986 0.96179 0.87756 0.83727 1.23085 1.03865 0.97842 0.92770 1.23636 0.89243 0.95128 0.95064 1.89184 1.34976 1.61484 1.45835 1.23496 0.95926 0.94101 0.88010 1.84709 1.45358 1.60519 1.21707 0.92092 0.88562 0.92246 0.91903 0.87352 0.91256 0.92372 0.88495 0.93010 0.76518 0.92290 0.92411 0.85520 0.88673 0.88464 0.86466 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.94 8.37 71.98 0.60 -4.34 16 2 C 0.12 3.64 1.13 -10.79 -0.01 3.63 16 3 C -0.13 -2.91 8.85 71.98 0.64 -2.27 16 4 C -0.18 -5.51 8.37 71.98 0.60 -4.90 16 5 O -0.38 -15.23 9.94 -55.45 -0.55 -15.78 16 6 C 0.65 30.02 8.02 129.79 1.04 31.06 16 7 O -0.60 -28.90 11.54 19.80 0.23 -28.67 16 8 N -0.67 -32.78 4.47 -577.35 -2.58 -35.36 16 9 C 0.38 19.22 2.70 43.50 0.12 19.34 16 10 H 0.07 3.51 7.57 -2.39 -0.02 3.49 16 11 C -0.56 -30.31 8.86 25.60 0.23 -30.08 16 12 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 13 C 0.04 2.05 5.23 84.66 0.44 2.49 16 14 N -0.83 -45.39 9.93 21.45 0.21 -45.18 16 15 Si 0.95 43.39 29.54 68.60 2.03 45.41 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 19 C 0.17 8.58 6.89 88.34 0.61 9.19 16 20 N -0.25 -13.11 9.54 -165.50 -1.58 -14.69 16 21 N -0.32 -14.77 12.22 -165.51 -2.02 -16.79 16 22 C 0.13 5.13 6.74 88.34 0.59 5.73 16 23 C -0.02 -0.57 3.65 -10.53 -0.04 -0.61 16 24 H 0.14 2.56 8.14 -2.38 -0.02 2.54 16 25 C -0.14 -2.75 6.73 31.61 0.21 -2.54 16 26 C 0.05 0.86 7.63 72.49 0.55 1.41 16 27 O -0.40 -11.09 11.65 -148.98 -1.74 -12.82 16 28 C 0.06 1.50 7.17 72.48 0.52 2.02 16 29 O -0.24 -10.63 10.87 -3.60 -0.04 -10.67 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.10 2.02 8.14 -2.39 -0.02 2.01 16 32 H 0.06 2.08 5.88 -2.39 -0.01 2.06 16 33 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.06 2.23 5.88 -2.39 -0.01 2.22 16 37 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.40 19.93 8.15 -92.71 -0.76 19.18 16 40 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 41 H 0.06 1.50 7.73 -2.39 -0.02 1.48 16 42 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.07 2.00 7.86 -2.38 -0.02 1.98 16 Total: -1.00 -71.48 378.26 0.32 -71.16 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: 0.26 Total: 33.25 kcal Atomic # 6 Polarization: 24.02 SS G_CDS: 6.11 Total: 30.13 kcal Atomic # 7 Polarization: -106.05 SS G_CDS: -5.97 Total: -112.02 kcal Atomic # 8 Polarization: -65.84 SS G_CDS: -2.10 Total: -67.94 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -71.48 0.32 -71.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255555864.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.429 kcal (2) G-P(sol) polarization free energy of solvation -71.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds