Wall clock time and date at job start Tue Mar 31 2020 22:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47539 * 2 1 4 4 N 1.46499 * 109.47475 * 179.97438 * 3 2 1 5 5 C 1.34776 * 119.99916 * 277.02533 * 4 3 2 6 6 O 1.21548 * 119.99645 * 176.83489 * 5 4 3 7 7 C 1.47884 * 120.00077 * 356.83961 * 5 4 3 8 8 N 1.32836 * 119.72122 * 6.35293 * 7 5 4 9 9 C 1.31368 * 121.69111 * 180.02562 * 8 7 5 10 10 C 1.39008 * 120.93239 * 359.96949 * 9 8 7 11 11 F 1.35098 * 120.33226 * 180.02562 * 10 9 8 12 12 C 1.38722 * 119.33758 * 0.02897 * 10 9 8 13 13 C 1.38838 * 118.44937 * 359.72488 * 12 10 9 14 14 F 1.35103 * 120.48263 * 180.28564 * 13 12 10 15 15 C 1.46494 * 119.99927 * 97.02603 * 4 3 2 16 16 H 1.09001 * 110.64377 * 358.31535 * 15 4 3 17 17 C 1.55159 * 110.87464 * 235.06339 * 15 4 3 18 18 C 1.55124 * 101.48843 * 205.89946 * 17 15 4 19 19 N 1.47425 * 104.72040 * 37.29461 * 18 17 15 20 20 C 1.36939 * 125.64564 * 155.82266 * 19 18 17 21 21 H 1.07999 * 120.00236 * 179.69108 * 20 19 18 22 22 C 1.38821 * 120.00141 * 359.68258 * 20 19 18 23 23 N 1.31619 * 119.99754 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99853 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47348 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46729 * 120.00572 * 24 22 20 27 27 H 1.48500 * 109.47309 * 240.00221 * 24 22 20 28 28 C 1.47015 * 108.70709 * 335.55309 * 19 18 17 29 29 H 1.08998 * 109.47236 * 59.99548 * 1 2 3 30 30 H 1.09000 * 109.47484 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46956 * 300.00054 * 1 2 3 32 32 H 1.09002 * 109.47356 * 240.00303 * 2 1 3 33 33 H 1.09008 * 109.47302 * 120.00355 * 2 1 3 34 34 H 1.09002 * 109.46549 * 59.99809 * 3 2 1 35 35 H 1.08998 * 109.47226 * 300.00458 * 3 2 1 36 36 H 1.07995 * 119.53859 * 179.97438 * 9 8 7 37 37 H 1.08004 * 120.77315 * 180.02562 * 12 10 9 38 38 H 1.08996 * 111.00405 * 324.14207 * 17 15 4 39 39 H 1.09007 * 111.00167 * 87.99001 * 17 15 4 40 40 H 1.09001 * 110.49657 * 278.45263 * 18 17 15 41 41 H 1.08998 * 110.34401 * 156.05739 * 18 17 15 42 42 H 0.96997 * 119.99573 * 179.97438 * 23 22 20 43 43 H 1.09001 * 109.88364 * 120.70376 * 28 19 18 44 44 H 1.08995 * 109.88278 * 241.71856 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1784 1.2999 1.1594 6 8 5.3925 1.2421 1.1535 7 6 3.4401 1.2136 2.4378 8 7 2.1133 1.1497 2.4291 9 6 1.4188 1.0727 3.5415 10 6 2.0516 1.0543 4.7791 11 9 1.3254 0.9743 5.9155 12 6 3.4361 1.1191 4.8356 13 6 4.1439 1.1947 3.6436 14 9 5.4936 1.2537 3.6506 15 6 4.2380 1.5975 -1.2583 16 1 3.5475 1.6706 -2.0985 17 6 5.2335 0.4256 -1.4663 18 6 6.3007 1.0851 -2.3787 19 7 6.4163 2.4680 -1.8809 20 6 7.5077 3.2814 -2.0305 21 1 7.4918 4.2851 -1.6319 22 6 8.6346 2.8160 -2.6942 23 7 8.6538 1.5929 -3.1802 24 14 10.1235 3.9254 -2.8976 25 1 9.8504 5.2413 -2.2660 26 1 11.3008 3.2983 -2.2449 27 1 10.4034 4.1183 -4.3432 28 6 5.1634 2.8313 -1.2030 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 0.3411 1.0228 3.4940 37 1 3.9516 1.1061 5.7846 38 1 5.6674 0.1086 -0.5180 39 1 4.7520 -0.4109 -1.9728 40 1 5.9695 1.0822 -3.4171 41 1 7.2545 0.5664 -2.2823 42 1 9.4410 1.2679 -3.6443 43 1 5.3666 3.0961 -0.1653 44 1 4.6951 3.6719 -1.7150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267467001.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:42 Heat of formation + Delta-G solvation = -26.459247 kcal Electronic energy + Delta-G solvation = -30629.526477 eV Core-core repulsion = 26220.381817 eV Total energy + Delta-G solvation = -4409.144660 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -49.61075 -49.21543 -40.99345 -39.36063 -36.74495 -35.90110 -33.05675 -32.79048 -31.86943 -31.08531 -29.01881 -27.32020 -26.17002 -25.00666 -24.50114 -23.83012 -22.00740 -21.12777 -20.06218 -19.45527 -18.62932 -18.33551 -17.31871 -16.82662 -16.66288 -16.33627 -15.82579 -15.71909 -15.57251 -14.84875 -14.81378 -14.75997 -14.49361 -14.13330 -13.75610 -13.61319 -13.46381 -13.24513 -12.98737 -12.79091 -12.43577 -12.19134 -11.98432 -11.60004 -11.45846 -11.33826 -10.92272 -10.82858 -10.80631 -10.69318 -10.48524 -10.29609 -10.03026 -9.98898 -9.68067 -9.42481 -9.33775 -9.19039 -8.53004 -8.24252 -6.68048 -5.52103 -2.92582 -0.03507 0.37493 2.46285 2.89251 3.25311 3.38314 3.48149 3.53144 3.55913 3.58137 3.69302 4.07549 4.14371 4.53024 4.61255 4.91613 4.99797 5.06995 5.12174 5.23254 5.35646 5.42529 5.49327 5.56368 5.64291 5.78011 5.82447 5.86821 5.90610 5.96234 6.01343 6.12867 6.40320 6.41709 6.61610 6.63188 6.70650 6.82654 7.00117 7.23773 7.55615 7.68590 7.76208 7.99280 8.32885 8.50700 9.35063 9.96180 10.61195 11.51770 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015667 B = 0.003418 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.719809 B = 8189.205310 C = 9493.758681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.128 4.128 3 C 0.102 3.898 4 N -0.582 5.582 5 C 0.556 3.444 6 O -0.486 6.486 7 C 0.042 3.958 8 N -0.388 5.388 9 C 0.054 3.946 10 C 0.099 3.901 11 F -0.119 7.119 12 C -0.159 4.159 13 C 0.145 3.855 14 F -0.091 7.091 15 C 0.134 3.866 16 H 0.092 0.908 17 C -0.157 4.157 18 C 0.158 3.842 19 N -0.596 5.596 20 C -0.213 4.213 21 H 0.076 0.924 22 C -0.014 4.014 23 N -0.923 5.923 24 Si 0.913 3.087 25 H -0.281 1.281 26 H -0.291 1.291 27 H -0.292 1.292 28 C 0.134 3.866 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.181 0.819 37 H 0.167 0.833 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.010 0.990 41 H 0.108 0.892 42 H 0.250 0.750 43 H 0.033 0.967 44 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.616 -3.774 14.740 25.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.167 4.167 3 C -0.021 4.021 4 N -0.313 5.313 5 C 0.341 3.659 6 O -0.358 6.358 7 C -0.097 4.097 8 N -0.099 5.099 9 C -0.107 4.107 10 C 0.077 3.923 11 F -0.097 7.097 12 C -0.186 4.186 13 C 0.122 3.878 14 F -0.069 7.069 15 C 0.031 3.969 16 H 0.110 0.890 17 C -0.196 4.196 18 C 0.033 3.967 19 N -0.322 5.322 20 C -0.342 4.342 21 H 0.094 0.906 22 C -0.209 4.209 23 N -0.572 5.572 24 Si 0.744 3.256 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.219 1.219 28 C 0.007 3.993 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.128 0.872 35 H 0.087 0.913 36 H 0.198 0.802 37 H 0.184 0.816 38 H 0.103 0.897 39 H 0.071 0.929 40 H 0.028 0.972 41 H 0.125 0.875 42 H 0.061 0.939 43 H 0.050 0.950 44 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -20.092 -3.766 13.841 24.686 hybrid contribution 1.077 0.518 0.980 1.545 sum -19.015 -3.247 14.820 24.326 Atomic orbital electron populations 1.21626 0.95498 1.01286 1.01628 1.21795 0.95691 0.97317 1.01857 1.22197 0.78596 0.97524 1.03780 1.47821 1.07001 1.70281 1.06226 1.17527 0.86715 0.79311 0.82369 1.90989 1.11895 1.47415 1.85534 1.21864 0.90124 1.03391 0.94304 1.68432 1.05671 1.08062 1.27736 1.23235 1.01995 0.99719 0.85783 1.18763 0.89060 1.00725 0.83755 1.91579 1.76834 1.92996 1.48295 1.21692 0.93193 1.03997 0.99741 1.18339 0.79175 0.97561 0.92749 1.91712 1.26275 1.91982 1.96920 1.22303 0.93400 0.98125 0.83077 0.89023 1.23507 0.97697 0.95862 1.02566 1.21902 0.97961 0.85031 0.91849 1.44307 1.11172 1.12170 1.64543 1.19104 0.90936 0.94697 1.29433 0.90645 1.24758 0.98234 0.96935 1.00923 1.69805 1.28677 1.15593 1.43150 0.86003 0.82929 0.79414 0.77211 1.20631 1.21825 1.21892 1.21468 0.87783 0.93347 0.96726 0.92923 0.93089 0.92587 0.92380 0.91936 0.87204 0.91269 0.80213 0.81591 0.89721 0.92905 0.97235 0.87460 0.93946 0.94958 0.96432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.91 37.15 0.37 -0.71 16 2 C -0.13 -1.30 5.60 -26.73 -0.15 -1.45 16 3 C 0.10 1.16 4.99 -4.04 -0.02 1.14 16 4 N -0.58 -9.09 2.56 -165.11 -0.42 -9.51 16 5 C 0.56 9.53 6.69 -12.31 -0.08 9.45 16 6 O -0.49 -10.53 11.71 5.32 0.06 -10.47 16 7 C 0.04 0.56 6.52 -82.97 -0.54 0.01 16 8 N -0.39 -3.85 4.34 -9.70 -0.04 -3.90 16 9 C 0.05 0.38 11.17 -17.46 -0.20 0.19 16 10 C 0.10 0.74 7.35 -39.12 -0.29 0.46 16 11 F -0.12 -0.86 17.28 2.25 0.04 -0.82 16 12 C -0.16 -1.38 10.14 -39.18 -0.40 -1.77 16 13 C 0.14 1.79 7.31 -38.84 -0.28 1.50 16 14 F -0.09 -1.40 15.57 2.25 0.04 -1.36 16 15 C 0.13 2.48 3.43 -66.09 -0.23 2.25 16 16 H 0.09 1.51 7.79 -51.93 -0.40 1.11 16 17 C -0.16 -3.29 6.41 -24.46 -0.16 -3.45 16 18 C 0.16 4.08 5.91 -2.41 -0.01 4.07 16 19 N -0.60 -16.34 3.39 -169.94 -0.58 -16.92 16 20 C -0.21 -6.31 10.27 -15.06 -0.15 -6.47 16 21 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 22 C -0.01 -0.40 5.49 -17.43 -0.10 -0.50 16 23 N -0.92 -28.12 10.08 55.49 0.56 -27.56 16 24 Si 0.91 23.14 29.55 -169.99 -5.02 18.12 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 C 0.13 3.05 6.51 -3.06 -0.02 3.03 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.69 6.78 -51.92 -0.35 0.34 16 34 H 0.11 1.15 5.21 -52.73 -0.27 0.88 16 35 H 0.07 0.72 7.83 -51.93 -0.41 0.32 16 36 H 0.18 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.17 1.05 8.06 -52.48 -0.42 0.63 16 38 H 0.08 1.95 5.72 -51.93 -0.30 1.65 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.11 3.15 5.86 -51.93 -0.30 2.84 16 42 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.03 0.79 6.37 -51.93 -0.33 0.46 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 358.32 15.07 5.40 5.40 Total: -1.00 -34.13 358.32 -7.95 -42.08 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -5.72 Total: -2.81 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: -2.26 Total: 7.75 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: -0.48 Total: -57.88 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.06 Total: -10.47 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.07 Total: -2.19 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.13 -7.95 -42.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267467001.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.620 kcal (2) G-P(sol) polarization free energy of solvation -34.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds