Wall clock time and date at job start Tue Mar 31 2020 22:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47539 * 2 1 4 4 N 1.46499 * 109.47475 * 179.97438 * 3 2 1 5 5 C 1.34776 * 119.99916 * 277.02533 * 4 3 2 6 6 O 1.21548 * 119.99645 * 176.83489 * 5 4 3 7 7 C 1.47884 * 120.00077 * 356.83961 * 5 4 3 8 8 N 1.32836 * 119.72122 * 6.35293 * 7 5 4 9 9 C 1.31368 * 121.69111 * 180.02562 * 8 7 5 10 10 C 1.39008 * 120.93239 * 359.96949 * 9 8 7 11 11 F 1.35098 * 120.33226 * 180.02562 * 10 9 8 12 12 C 1.38722 * 119.33758 * 0.02897 * 10 9 8 13 13 C 1.38838 * 118.44937 * 359.72488 * 12 10 9 14 14 F 1.35103 * 120.48263 * 180.28564 * 13 12 10 15 15 C 1.46494 * 119.99927 * 97.02603 * 4 3 2 16 16 H 1.09001 * 110.64377 * 358.31535 * 15 4 3 17 17 C 1.55159 * 110.87464 * 235.06339 * 15 4 3 18 18 C 1.55124 * 101.48843 * 205.89946 * 17 15 4 19 19 N 1.47425 * 104.72040 * 37.29461 * 18 17 15 20 20 C 1.36939 * 125.64564 * 155.82266 * 19 18 17 21 21 H 1.07999 * 120.00236 * 179.69108 * 20 19 18 22 22 C 1.38821 * 120.00141 * 359.68258 * 20 19 18 23 23 N 1.31619 * 119.99754 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99853 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47348 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46729 * 120.00572 * 24 22 20 27 27 H 1.48500 * 109.47309 * 240.00221 * 24 22 20 28 28 C 1.47015 * 108.70709 * 335.55309 * 19 18 17 29 29 H 1.08998 * 109.47236 * 59.99548 * 1 2 3 30 30 H 1.09000 * 109.47484 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46956 * 300.00054 * 1 2 3 32 32 H 1.09002 * 109.47356 * 240.00303 * 2 1 3 33 33 H 1.09008 * 109.47302 * 120.00355 * 2 1 3 34 34 H 1.09002 * 109.46549 * 59.99809 * 3 2 1 35 35 H 1.08998 * 109.47226 * 300.00458 * 3 2 1 36 36 H 1.07995 * 119.53859 * 179.97438 * 9 8 7 37 37 H 1.08004 * 120.77315 * 180.02562 * 12 10 9 38 38 H 1.08996 * 111.00405 * 324.14207 * 17 15 4 39 39 H 1.09007 * 111.00167 * 87.99001 * 17 15 4 40 40 H 1.09001 * 110.49657 * 278.45263 * 18 17 15 41 41 H 1.08998 * 110.34401 * 156.05739 * 18 17 15 42 42 H 0.96997 * 119.99573 * 179.97438 * 23 22 20 43 43 H 1.09001 * 109.88364 * 120.70376 * 28 19 18 44 44 H 1.08995 * 109.88278 * 241.71856 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1784 1.2999 1.1594 6 8 5.3925 1.2421 1.1535 7 6 3.4401 1.2136 2.4378 8 7 2.1133 1.1497 2.4291 9 6 1.4188 1.0727 3.5415 10 6 2.0516 1.0543 4.7791 11 9 1.3254 0.9743 5.9155 12 6 3.4361 1.1191 4.8356 13 6 4.1439 1.1947 3.6436 14 9 5.4936 1.2537 3.6506 15 6 4.2380 1.5975 -1.2583 16 1 3.5475 1.6706 -2.0985 17 6 5.2335 0.4256 -1.4663 18 6 6.3007 1.0851 -2.3787 19 7 6.4163 2.4680 -1.8809 20 6 7.5077 3.2814 -2.0305 21 1 7.4918 4.2851 -1.6319 22 6 8.6346 2.8160 -2.6942 23 7 8.6538 1.5929 -3.1802 24 14 10.1235 3.9254 -2.8976 25 1 9.8504 5.2413 -2.2660 26 1 11.3008 3.2983 -2.2449 27 1 10.4034 4.1183 -4.3432 28 6 5.1634 2.8313 -1.2030 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 0.3411 1.0228 3.4940 37 1 3.9516 1.1061 5.7846 38 1 5.6674 0.1086 -0.5180 39 1 4.7520 -0.4109 -1.9728 40 1 5.9695 1.0822 -3.4171 41 1 7.2545 0.5664 -2.2823 42 1 9.4410 1.2679 -3.6443 43 1 5.3666 3.0961 -0.1653 44 1 4.6951 3.6719 -1.7150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267467001.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:42 Heat of formation + Delta-G solvation = -47.157945 kcal Electronic energy + Delta-G solvation = -30630.424040 eV Core-core repulsion = 26220.381817 eV Total energy + Delta-G solvation = -4410.042223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.24585 -50.21720 -42.01709 -40.51544 -38.44110 -37.14542 -34.64370 -33.57842 -33.25714 -32.15315 -30.92668 -29.02315 -27.08521 -26.70701 -25.51706 -24.92424 -23.09092 -22.35273 -21.95947 -20.72154 -19.42806 -19.22795 -18.91934 -18.40385 -17.49998 -17.22034 -16.94887 -16.90730 -16.58383 -16.53143 -15.97929 -15.76994 -15.70588 -15.59849 -15.18439 -14.72972 -14.40977 -14.30761 -14.22023 -13.96183 -13.75310 -13.61830 -13.40590 -13.00938 -12.93704 -12.75598 -12.73949 -12.42406 -12.23772 -11.99491 -11.94194 -11.83205 -11.58954 -11.48078 -11.05613 -10.90965 -10.74809 -10.44822 -10.17768 -9.55671 -8.87230 -7.76811 -5.21013 -0.87293 -0.34161 1.42882 1.46028 1.48991 1.55845 1.75438 2.37126 2.45979 2.50389 2.77134 2.84608 3.29309 3.33392 3.41849 3.73371 3.76957 3.89823 3.98230 4.16827 4.23034 4.27606 4.34801 4.37954 4.56108 4.60484 4.67675 4.70512 4.77906 4.95139 4.97507 5.01620 5.05898 5.16159 5.26502 5.40250 5.41344 5.43504 5.62877 5.66559 5.78227 5.80743 6.20401 6.30811 6.41172 7.08198 7.10561 7.77755 8.41988 9.25077 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015667 B = 0.003418 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.719809 B = 8189.205310 C = 9493.758681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.122 4.122 3 C 0.098 3.902 4 N -0.578 5.578 5 C 0.549 3.451 6 O -0.547 6.547 7 C 0.023 3.977 8 N -0.387 5.387 9 C 0.076 3.924 10 C 0.118 3.882 11 F -0.108 7.108 12 C -0.147 4.147 13 C 0.119 3.881 14 F -0.120 7.120 15 C 0.151 3.849 16 H 0.123 0.877 17 C -0.142 4.142 18 C 0.162 3.838 19 N -0.619 5.619 20 C -0.237 4.237 21 H 0.074 0.926 22 C -0.069 4.069 23 N -0.949 5.949 24 Si 0.983 3.017 25 H -0.269 1.269 26 H -0.293 1.293 27 H -0.285 1.285 28 C 0.133 3.867 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.052 0.948 34 H 0.125 0.875 35 H 0.084 0.916 36 H 0.226 0.774 37 H 0.188 0.812 38 H 0.061 0.939 39 H 0.082 0.918 40 H -0.002 1.002 41 H 0.067 0.933 42 H 0.247 0.753 43 H 0.011 0.989 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.366 -3.449 16.211 29.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.161 4.161 3 C -0.023 4.023 4 N -0.308 5.308 5 C 0.336 3.664 6 O -0.424 6.424 7 C -0.114 4.114 8 N -0.098 5.098 9 C -0.087 4.087 10 C 0.096 3.904 11 F -0.086 7.086 12 C -0.174 4.174 13 C 0.096 3.904 14 F -0.098 7.098 15 C 0.047 3.953 16 H 0.140 0.860 17 C -0.181 4.181 18 C 0.037 3.963 19 N -0.345 5.345 20 C -0.366 4.366 21 H 0.092 0.908 22 C -0.261 4.261 23 N -0.599 5.599 24 Si 0.811 3.189 25 H -0.193 1.193 26 H -0.220 1.220 27 H -0.212 1.212 28 C 0.006 3.994 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.142 0.858 35 H 0.102 0.898 36 H 0.243 0.757 37 H 0.206 0.794 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.016 0.984 41 H 0.085 0.915 42 H 0.057 0.943 43 H 0.029 0.971 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -23.906 -3.435 15.318 28.600 hybrid contribution 2.093 0.399 0.670 2.234 sum -21.813 -3.037 15.988 27.215 Atomic orbital electron populations 1.21590 0.92988 1.02020 1.02817 1.21731 0.97702 0.95907 1.00747 1.22536 0.75609 0.98879 1.05263 1.47889 1.08650 1.69533 1.04777 1.18137 0.86370 0.77942 0.83939 1.90953 1.14638 1.50121 1.86664 1.21216 0.91338 1.06375 0.92445 1.68364 1.03906 1.08441 1.29044 1.23940 1.03596 0.96590 0.84555 1.18732 0.88443 0.98987 0.84211 1.91622 1.76441 1.92638 1.47944 1.21856 0.93817 1.02488 0.99201 1.18611 0.78244 0.99574 0.93945 1.91635 1.28486 1.92606 1.97103 1.22033 0.93116 0.94472 0.85679 0.85972 1.23246 0.97067 0.97328 1.00444 1.21646 0.97612 0.84771 0.92301 1.44597 1.12329 1.12632 1.64893 1.19449 0.92320 0.95175 1.29655 0.90779 1.25658 1.01043 0.98523 1.00869 1.70072 1.29145 1.17095 1.43548 0.84945 0.78800 0.77963 0.77223 1.19318 1.21963 1.21194 1.21585 0.87114 0.95731 0.94928 0.92362 0.92608 0.90796 0.93780 0.92904 0.85768 0.89773 0.75724 0.79422 0.92077 0.89994 0.98379 0.91523 0.94343 0.97066 0.95453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.91 71.98 0.71 -0.80 16 2 C -0.12 -2.16 5.60 30.59 0.17 -1.99 16 3 C 0.10 1.99 4.99 86.38 0.43 2.42 16 4 N -0.58 -17.83 2.56 -794.58 -2.03 -19.86 16 5 C 0.55 19.38 6.69 86.80 0.58 19.96 16 6 O -0.55 -25.38 11.71 -3.87 -0.05 -25.43 16 7 C 0.02 0.59 6.52 41.88 0.27 0.87 16 8 N -0.39 -6.58 4.34 -184.61 -0.80 -7.38 16 9 C 0.08 0.73 11.17 84.95 0.95 1.68 16 10 C 0.12 1.30 7.35 22.57 0.17 1.47 16 11 F -0.11 -1.06 17.28 44.97 0.78 -0.28 16 12 C -0.15 -2.23 10.14 22.53 0.23 -2.00 16 13 C 0.12 2.95 7.31 22.75 0.17 3.12 16 14 F -0.12 -3.96 15.57 44.97 0.70 -3.26 16 15 C 0.15 5.60 3.43 46.18 0.16 5.75 16 16 H 0.12 3.80 7.79 -2.39 -0.02 3.78 16 17 C -0.14 -6.12 6.41 32.06 0.21 -5.92 16 18 C 0.16 8.80 5.91 86.93 0.51 9.31 16 19 N -0.62 -35.41 3.39 -691.56 -2.35 -37.76 16 20 C -0.24 -14.58 10.27 84.04 0.86 -13.72 16 21 H 0.07 4.43 7.83 -2.91 -0.02 4.41 16 22 C -0.07 -4.20 5.49 84.86 0.47 -3.73 16 23 N -0.95 -60.26 10.08 21.65 0.22 -60.04 16 24 Si 0.98 48.89 29.55 68.60 2.03 50.92 16 25 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 26 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 27 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 28 C 0.13 6.23 6.51 86.73 0.56 6.79 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 1.05 6.78 -2.38 -0.02 1.03 16 34 H 0.13 2.21 5.21 -3.97 -0.02 2.18 16 35 H 0.08 1.48 7.83 -2.39 -0.02 1.46 16 36 H 0.23 0.16 8.06 -2.91 -0.02 0.14 16 37 H 0.19 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.06 2.97 5.72 -2.39 -0.01 2.96 16 39 H 0.08 3.01 8.14 -2.38 -0.02 2.99 16 40 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 41 H 0.07 4.17 5.86 -2.39 -0.01 4.16 16 42 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 43 H 0.01 0.58 6.37 -2.39 -0.02 0.56 16 44 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -81.20 358.32 5.97 -75.23 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: 1.03 Total: 4.65 kcal Atomic # 6 Polarization: 16.76 SS G_CDS: 6.45 Total: 23.21 kcal Atomic # 7 Polarization: -120.08 SS G_CDS: -4.96 Total: -125.04 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.05 Total: -25.43 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 1.48 Total: -3.54 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 2.03 Total: 50.92 kcal Total: -81.20 5.97 -75.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267467001.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.071 kcal (2) G-P(sol) polarization free energy of solvation -81.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds