Wall clock time and date at job start Tue Mar 31 2020 22:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46894 * 2 1 4 4 N 1.46499 * 109.47266 * 179.97438 * 3 2 1 5 5 C 1.34778 * 120.00473 * 273.29285 * 4 3 2 6 6 O 1.21546 * 119.99925 * 185.42092 * 5 4 3 7 7 C 1.47880 * 119.99835 * 5.42188 * 5 4 3 8 8 N 1.32851 * 119.72056 * 5.97066 * 7 5 4 9 9 C 1.31367 * 121.68789 * 180.02562 * 8 7 5 10 10 C 1.38999 * 120.93300 * 0.02562 * 9 8 7 11 11 F 1.35100 * 120.32910 * 179.97438 * 10 9 8 12 12 C 1.38720 * 119.34339 * 359.97438 * 10 9 8 13 13 C 1.38842 * 118.44671 * 359.72631 * 12 10 9 14 14 F 1.35101 * 120.48282 * 180.26348 * 13 12 10 15 15 C 1.46504 * 119.99954 * 93.29162 * 4 3 2 16 16 H 1.09001 * 110.88558 * 356.12101 * 15 4 3 17 17 C 1.55154 * 111.00522 * 119.99670 * 15 4 3 18 18 C 1.54323 * 102.93952 * 153.57847 * 17 15 4 19 19 N 1.47022 * 107.27266 * 337.80891 * 18 17 15 20 20 C 1.36945 * 125.64957 * 178.96043 * 19 18 17 21 21 H 1.07993 * 119.99801 * 186.08297 * 20 19 18 22 22 C 1.38812 * 119.99958 * 6.08557 * 20 19 18 23 23 N 1.31627 * 120.00124 * 353.11928 * 22 20 19 24 24 Si 1.86798 * 120.00260 * 173.12130 * 22 20 19 25 25 H 1.48501 * 109.46991 * 94.98239 * 24 22 20 26 26 H 1.48499 * 109.47347 * 214.98487 * 24 22 20 27 27 H 1.48500 * 109.46809 * 334.98709 * 24 22 20 28 28 C 1.47419 * 108.70290 * 358.94038 * 19 18 17 29 29 H 1.09005 * 109.46708 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47189 * 299.99941 * 1 2 3 31 31 H 1.09002 * 109.47113 * 60.00055 * 1 2 3 32 32 H 1.08998 * 109.47649 * 240.00324 * 2 1 3 33 33 H 1.09003 * 109.47543 * 119.99625 * 2 1 3 34 34 H 1.08999 * 109.47155 * 60.00037 * 3 2 1 35 35 H 1.08998 * 109.47384 * 300.00357 * 3 2 1 36 36 H 1.07996 * 119.53217 * 180.02562 * 9 8 7 37 37 H 1.07997 * 120.77632 * 180.02562 * 12 10 9 38 38 H 1.08996 * 110.72374 * 271.93925 * 17 15 4 39 39 H 1.09006 * 110.71836 * 35.04259 * 17 15 4 40 40 H 1.09002 * 109.88620 * 97.22623 * 18 17 15 41 41 H 1.09009 * 109.88191 * 218.24119 * 18 17 15 42 42 H 0.96995 * 119.99982 * 179.97438 * 23 22 20 43 43 H 1.08996 * 110.36633 * 265.28797 * 28 19 18 44 44 H 1.09004 * 110.36950 * 142.96239 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1784 1.3758 1.1661 6 8 5.3898 1.4750 1.1746 7 6 3.4435 1.1817 2.4346 8 7 2.1347 0.9551 2.4096 9 6 1.4439 0.7778 3.5127 10 6 2.0613 0.8216 4.7573 11 9 1.3388 0.6381 5.8841 12 6 3.4266 1.0556 4.8310 13 6 4.1320 1.2330 3.6483 14 9 5.4639 1.4581 3.6718 15 6 4.2380 1.5153 -1.2658 16 1 3.5527 1.4949 -2.1132 17 6 5.1431 2.7746 -1.3129 18 6 6.2668 2.3563 -2.2845 19 7 6.3065 0.8867 -2.2993 20 6 7.1538 0.1187 -3.0526 21 1 7.0397 -0.9551 -3.0678 22 6 8.1594 0.7204 -3.7966 23 7 8.2160 2.0323 -3.8871 24 14 9.4325 -0.3316 -4.6695 25 1 9.0112 -0.5531 -6.0762 26 1 10.7456 0.3615 -4.6493 27 1 9.5525 -1.6398 -3.9770 28 6 5.2834 0.3768 -1.3684 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 0.3811 0.5955 3.4518 37 1 3.9300 1.0939 5.7857 38 1 4.5933 3.6303 -1.7047 39 1 5.5467 2.9967 -0.3250 40 1 6.0506 2.7313 -3.2849 41 1 7.2220 2.7518 -1.9388 42 1 8.9189 2.4528 -4.4067 43 1 5.7245 0.1777 -0.3918 44 1 4.8225 -0.5263 -1.7687 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267467002.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:47 Heat of formation + Delta-G solvation = -28.672822 kcal Electronic energy + Delta-G solvation = -30537.157905 eV Core-core repulsion = 26127.917257 eV Total energy + Delta-G solvation = -4409.240648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -49.63344 -49.26288 -41.02403 -39.39232 -36.78451 -35.93039 -33.07778 -32.76653 -31.90909 -31.11193 -29.01899 -27.37369 -26.18349 -25.00851 -24.53143 -23.84151 -21.99464 -21.16198 -19.97559 -19.57871 -18.66143 -18.37184 -17.40770 -16.79187 -16.69592 -16.36739 -15.80753 -15.76719 -15.60387 -14.89523 -14.83625 -14.72878 -14.48960 -14.15894 -13.78869 -13.56706 -13.46928 -13.26725 -12.97444 -12.84947 -12.29895 -12.20193 -12.07160 -11.76677 -11.66899 -11.32536 -10.86200 -10.80766 -10.74782 -10.61553 -10.45528 -10.20550 -10.13779 -10.01355 -9.76933 -9.55064 -9.37500 -9.23640 -8.51168 -8.26824 -6.67528 -5.61713 -2.92971 -0.06690 0.35198 2.41837 2.86130 3.22544 3.33315 3.46653 3.52153 3.54386 3.55462 3.67180 4.05098 4.11152 4.50984 4.60448 4.89277 5.00637 5.06397 5.11577 5.20932 5.37504 5.42512 5.48840 5.53348 5.67334 5.76401 5.81883 5.86308 5.93381 5.93712 6.00915 6.14162 6.33240 6.43181 6.54750 6.64309 6.70155 6.79282 6.99003 7.24037 7.55535 7.66876 7.79139 7.93731 8.25997 8.37500 9.32612 9.93295 10.60735 11.50492 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.017204 B = 0.003173 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.179549 B = 8821.558378 C = 9703.768073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.113 3.887 4 N -0.581 5.581 5 C 0.559 3.441 6 O -0.494 6.494 7 C 0.040 3.960 8 N -0.386 5.386 9 C 0.054 3.946 10 C 0.100 3.900 11 F -0.118 7.118 12 C -0.160 4.160 13 C 0.145 3.855 14 F -0.092 7.092 15 C 0.130 3.870 16 H 0.095 0.905 17 C -0.155 4.155 18 C 0.185 3.815 19 N -0.601 5.601 20 C -0.224 4.224 21 H 0.076 0.924 22 C -0.008 4.008 23 N -0.920 5.920 24 Si 0.909 3.091 25 H -0.290 1.290 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.128 3.872 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.181 0.819 37 H 0.166 0.834 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.041 0.959 41 H 0.046 0.954 42 H 0.251 0.749 43 H 0.043 0.957 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.626 -0.570 17.463 26.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C -0.009 4.009 4 N -0.312 5.312 5 C 0.344 3.656 6 O -0.367 6.367 7 C -0.099 4.099 8 N -0.097 5.097 9 C -0.108 4.108 10 C 0.078 3.922 11 F -0.097 7.097 12 C -0.187 4.187 13 C 0.122 3.878 14 F -0.070 7.070 15 C 0.027 3.973 16 H 0.113 0.887 17 C -0.194 4.194 18 C 0.060 3.940 19 N -0.328 5.328 20 C -0.352 4.352 21 H 0.094 0.906 22 C -0.204 4.204 23 N -0.568 5.568 24 Si 0.740 3.260 25 H -0.218 1.218 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.001 3.999 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.088 0.912 36 H 0.198 0.802 37 H 0.184 0.816 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -19.121 -0.493 16.503 25.263 hybrid contribution 1.074 -0.528 0.654 1.364 sum -18.047 -1.021 17.158 24.922 Atomic orbital electron populations 1.21624 0.95584 1.01299 1.01488 1.21848 0.95625 0.97235 1.02145 1.21958 0.78446 0.97599 1.02941 1.47800 1.07055 1.70810 1.05528 1.17530 0.86620 0.79088 0.82368 1.90941 1.12302 1.47894 1.85560 1.21817 0.90583 1.03411 0.94127 1.68482 1.05542 1.07347 1.28325 1.23213 1.01960 0.99841 0.85736 1.18774 0.89296 1.00114 0.83985 1.91581 1.76943 1.92032 1.49117 1.21684 0.93413 1.03757 0.99877 1.18337 0.79571 0.97106 0.92769 1.91700 1.28077 1.90323 1.96902 1.22513 0.93460 0.98508 0.82842 0.88684 1.23264 0.98260 0.95675 1.02191 1.21053 0.94133 0.83737 0.95099 1.44306 1.39271 1.01904 1.47319 1.19032 1.06475 0.89943 1.19798 0.90575 1.24805 0.99007 0.95840 1.00787 1.69984 1.34606 1.07412 1.44767 0.86140 0.81475 0.79262 0.79161 1.21792 1.21680 1.20697 1.21829 0.89558 0.93496 0.95058 0.93051 0.92692 0.93012 0.92344 0.91277 0.88448 0.91221 0.80200 0.81596 0.92618 0.90598 0.94120 0.93617 0.93867 0.93956 0.94951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.13 -1.34 5.57 -26.73 -0.15 -1.48 16 3 C 0.11 1.27 4.94 -4.04 -0.02 1.25 16 4 N -0.58 -8.88 2.57 -164.77 -0.42 -9.30 16 5 C 0.56 9.23 6.89 -12.31 -0.08 9.14 16 6 O -0.49 -10.20 11.39 5.33 0.06 -10.14 16 7 C 0.04 0.50 6.55 -82.96 -0.54 -0.04 16 8 N -0.39 -3.72 4.01 -9.70 -0.04 -3.76 16 9 C 0.05 0.37 11.17 -17.47 -0.20 0.18 16 10 C 0.10 0.72 7.35 -39.12 -0.29 0.43 16 11 F -0.12 -0.83 17.28 2.25 0.04 -0.79 16 12 C -0.16 -1.31 10.14 -39.18 -0.40 -1.71 16 13 C 0.15 1.70 7.31 -38.84 -0.28 1.42 16 14 F -0.09 -1.34 15.56 2.25 0.04 -1.30 16 15 C 0.13 2.40 3.54 -65.78 -0.23 2.17 16 16 H 0.10 1.63 7.87 -51.93 -0.41 1.22 16 17 C -0.15 -3.19 6.32 -24.90 -0.16 -3.34 16 18 C 0.18 4.79 5.38 -3.06 -0.02 4.78 16 19 N -0.60 -16.37 3.39 -170.07 -0.58 -16.95 16 20 C -0.22 -6.57 10.26 -15.06 -0.15 -6.72 16 21 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 22 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 23 N -0.92 -28.08 10.36 55.49 0.58 -27.50 16 24 Si 0.91 22.92 29.56 -169.99 -5.02 17.90 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 28 C 0.13 2.89 6.58 -2.53 -0.02 2.87 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.76 6.37 -51.93 -0.33 0.43 16 34 H 0.10 0.99 5.58 -51.93 -0.29 0.70 16 35 H 0.07 0.72 7.92 -51.93 -0.41 0.31 16 36 H 0.18 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.08 1.65 6.07 -51.93 -0.32 1.33 16 40 H 0.04 1.13 7.55 -51.93 -0.39 0.73 16 41 H 0.05 1.33 7.37 -51.92 -0.38 0.95 16 42 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.04 1.04 5.72 -51.93 -0.30 0.75 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 358.42 15.07 5.40 5.40 Total: -1.00 -33.90 358.42 -7.97 -41.88 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -5.76 Total: -3.33 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -2.27 Total: 7.88 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -0.46 Total: -57.51 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.06 Total: -10.14 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.07 Total: -2.09 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.90 -7.97 -41.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267467002.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.206 kcal (2) G-P(sol) polarization free energy of solvation -33.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds