Wall clock time and date at job start Tue Mar 31 2020 22:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46894 * 2 1 4 4 N 1.46499 * 109.47266 * 179.97438 * 3 2 1 5 5 C 1.34778 * 120.00473 * 273.29285 * 4 3 2 6 6 O 1.21546 * 119.99925 * 185.42092 * 5 4 3 7 7 C 1.47880 * 119.99835 * 5.42188 * 5 4 3 8 8 N 1.32851 * 119.72056 * 5.97066 * 7 5 4 9 9 C 1.31367 * 121.68789 * 180.02562 * 8 7 5 10 10 C 1.38999 * 120.93300 * 0.02562 * 9 8 7 11 11 F 1.35100 * 120.32910 * 179.97438 * 10 9 8 12 12 C 1.38720 * 119.34339 * 359.97438 * 10 9 8 13 13 C 1.38842 * 118.44671 * 359.72631 * 12 10 9 14 14 F 1.35101 * 120.48282 * 180.26348 * 13 12 10 15 15 C 1.46504 * 119.99954 * 93.29162 * 4 3 2 16 16 H 1.09001 * 110.88558 * 356.12101 * 15 4 3 17 17 C 1.55154 * 111.00522 * 119.99670 * 15 4 3 18 18 C 1.54323 * 102.93952 * 153.57847 * 17 15 4 19 19 N 1.47022 * 107.27266 * 337.80891 * 18 17 15 20 20 C 1.36945 * 125.64957 * 178.96043 * 19 18 17 21 21 H 1.07993 * 119.99801 * 186.08297 * 20 19 18 22 22 C 1.38812 * 119.99958 * 6.08557 * 20 19 18 23 23 N 1.31627 * 120.00124 * 353.11928 * 22 20 19 24 24 Si 1.86798 * 120.00260 * 173.12130 * 22 20 19 25 25 H 1.48501 * 109.46991 * 94.98239 * 24 22 20 26 26 H 1.48499 * 109.47347 * 214.98487 * 24 22 20 27 27 H 1.48500 * 109.46809 * 334.98709 * 24 22 20 28 28 C 1.47419 * 108.70290 * 358.94038 * 19 18 17 29 29 H 1.09005 * 109.46708 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47189 * 299.99941 * 1 2 3 31 31 H 1.09002 * 109.47113 * 60.00055 * 1 2 3 32 32 H 1.08998 * 109.47649 * 240.00324 * 2 1 3 33 33 H 1.09003 * 109.47543 * 119.99625 * 2 1 3 34 34 H 1.08999 * 109.47155 * 60.00037 * 3 2 1 35 35 H 1.08998 * 109.47384 * 300.00357 * 3 2 1 36 36 H 1.07996 * 119.53217 * 180.02562 * 9 8 7 37 37 H 1.07997 * 120.77632 * 180.02562 * 12 10 9 38 38 H 1.08996 * 110.72374 * 271.93925 * 17 15 4 39 39 H 1.09006 * 110.71836 * 35.04259 * 17 15 4 40 40 H 1.09002 * 109.88620 * 97.22623 * 18 17 15 41 41 H 1.09009 * 109.88191 * 218.24119 * 18 17 15 42 42 H 0.96995 * 119.99982 * 179.97438 * 23 22 20 43 43 H 1.08996 * 110.36633 * 265.28797 * 28 19 18 44 44 H 1.09004 * 110.36950 * 142.96239 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1784 1.3758 1.1661 6 8 5.3898 1.4750 1.1746 7 6 3.4435 1.1817 2.4346 8 7 2.1347 0.9551 2.4096 9 6 1.4439 0.7778 3.5127 10 6 2.0613 0.8216 4.7573 11 9 1.3388 0.6381 5.8841 12 6 3.4266 1.0556 4.8310 13 6 4.1320 1.2330 3.6483 14 9 5.4639 1.4581 3.6718 15 6 4.2380 1.5153 -1.2658 16 1 3.5527 1.4949 -2.1132 17 6 5.1431 2.7746 -1.3129 18 6 6.2668 2.3563 -2.2845 19 7 6.3065 0.8867 -2.2993 20 6 7.1538 0.1187 -3.0526 21 1 7.0397 -0.9551 -3.0678 22 6 8.1594 0.7204 -3.7966 23 7 8.2160 2.0323 -3.8871 24 14 9.4325 -0.3316 -4.6695 25 1 9.0112 -0.5531 -6.0762 26 1 10.7456 0.3615 -4.6493 27 1 9.5525 -1.6398 -3.9770 28 6 5.2834 0.3768 -1.3684 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 0.3811 0.5955 3.4518 37 1 3.9300 1.0939 5.7857 38 1 4.5933 3.6303 -1.7047 39 1 5.5467 2.9967 -0.3250 40 1 6.0506 2.7313 -3.2849 41 1 7.2220 2.7518 -1.9388 42 1 8.9189 2.4528 -4.4067 43 1 5.7245 0.1777 -0.3918 44 1 4.8225 -0.5263 -1.7687 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267467002.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:46 Heat of formation + Delta-G solvation = -49.000154 kcal Electronic energy + Delta-G solvation = -30538.039364 eV Core-core repulsion = 26127.917257 eV Total energy + Delta-G solvation = -4410.122107 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.23849 -50.20896 -42.02121 -40.51976 -38.47102 -37.16438 -34.64475 -33.54654 -33.28562 -32.15148 -30.92811 -29.08609 -27.08101 -26.69334 -25.51891 -24.92167 -23.11819 -22.28204 -21.98359 -20.79530 -19.41815 -19.23824 -18.92456 -18.39682 -17.49083 -17.21366 -16.95241 -16.86228 -16.57698 -16.54500 -15.98686 -15.76556 -15.71101 -15.60005 -15.14444 -14.54590 -14.45983 -14.35111 -14.23240 -14.09126 -13.73096 -13.69754 -13.60091 -12.97202 -12.87910 -12.77122 -12.68037 -12.39348 -12.12255 -12.03764 -11.93216 -11.89462 -11.69151 -11.46668 -11.02662 -10.88926 -10.70678 -10.52928 -10.17807 -9.61393 -8.87158 -7.87001 -5.21921 -0.86959 -0.32697 1.42834 1.46391 1.46852 1.55781 1.74259 2.36902 2.46060 2.50396 2.77989 2.84858 3.29183 3.32326 3.43185 3.69857 3.78464 3.90162 3.98291 4.14478 4.22880 4.26401 4.34770 4.40222 4.53705 4.61728 4.67882 4.68990 4.77619 4.90458 4.97602 5.00230 5.09182 5.16362 5.25666 5.41000 5.41935 5.43693 5.63995 5.67103 5.69775 5.77196 6.17333 6.21760 6.40208 7.04124 7.08337 7.74570 8.41156 9.24154 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.017204 B = 0.003173 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.179549 B = 8821.558378 C = 9703.768073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.125 4.125 3 C 0.110 3.890 4 N -0.578 5.578 5 C 0.553 3.447 6 O -0.549 6.549 7 C 0.021 3.979 8 N -0.386 5.386 9 C 0.074 3.926 10 C 0.119 3.881 11 F -0.109 7.109 12 C -0.148 4.148 13 C 0.122 3.878 14 F -0.119 7.119 15 C 0.150 3.850 16 H 0.117 0.883 17 C -0.139 4.139 18 C 0.196 3.804 19 N -0.622 5.622 20 C -0.246 4.246 21 H 0.080 0.920 22 C -0.066 4.066 23 N -0.949 5.949 24 Si 0.981 3.019 25 H -0.280 1.280 26 H -0.293 1.293 27 H -0.271 1.271 28 C 0.127 3.873 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.061 0.939 34 H 0.115 0.885 35 H 0.083 0.917 36 H 0.224 0.776 37 H 0.189 0.811 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.017 0.983 41 H -0.001 1.001 42 H 0.248 0.752 43 H 0.022 0.978 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.281 -1.426 18.950 30.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.164 4.164 3 C -0.011 4.011 4 N -0.308 5.308 5 C 0.340 3.660 6 O -0.427 6.427 7 C -0.116 4.116 8 N -0.097 5.097 9 C -0.088 4.088 10 C 0.097 3.903 11 F -0.087 7.087 12 C -0.174 4.174 13 C 0.099 3.901 14 F -0.097 7.097 15 C 0.046 3.954 16 H 0.135 0.865 17 C -0.178 4.178 18 C 0.070 3.930 19 N -0.349 5.349 20 C -0.375 4.375 21 H 0.098 0.902 22 C -0.259 4.259 23 N -0.598 5.598 24 Si 0.809 3.191 25 H -0.207 1.207 26 H -0.220 1.220 27 H -0.196 1.196 28 C 0.001 3.999 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.133 0.867 35 H 0.102 0.898 36 H 0.241 0.759 37 H 0.206 0.794 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.035 0.965 41 H 0.017 0.983 42 H 0.057 0.943 43 H 0.040 0.960 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -22.836 -1.364 18.005 29.112 hybrid contribution 2.085 -0.310 0.349 2.137 sum -20.751 -1.674 18.354 27.754 Atomic orbital electron populations 1.21585 0.93047 1.02005 1.02706 1.21790 0.97678 0.96034 1.00852 1.22284 0.75549 0.98745 1.04493 1.47845 1.08631 1.70318 1.04005 1.18128 0.86306 0.77770 0.83812 1.90908 1.14848 1.50300 1.86625 1.21172 0.91785 1.06314 0.92337 1.68424 1.03981 1.07722 1.29590 1.23882 1.03353 0.96999 0.84591 1.18746 0.88713 0.98456 0.84380 1.91623 1.76584 1.91682 1.48804 1.21851 0.93888 1.02255 0.99446 1.18584 0.78791 0.98858 0.93830 1.91631 1.30071 1.90925 1.97062 1.22141 0.92902 0.94962 0.85392 0.86521 1.23046 0.97118 0.97733 0.99950 1.20764 0.93965 0.83348 0.94917 1.44612 1.40142 1.02476 1.47638 1.19439 1.07396 0.90549 1.20116 0.90205 1.25723 1.00946 0.97202 1.01981 1.70209 1.34995 1.09084 1.45497 0.85032 0.78150 0.77741 0.78219 1.20667 1.21967 1.19589 1.21879 0.89710 0.95384 0.92960 0.92624 0.90667 0.92623 0.94335 0.92009 0.86718 0.89836 0.75934 0.79377 0.89600 0.92006 0.96457 0.98274 0.94309 0.96045 0.94323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.91 71.98 0.71 -0.84 16 2 C -0.12 -2.27 5.57 30.59 0.17 -2.10 16 3 C 0.11 2.21 4.94 86.38 0.43 2.63 16 4 N -0.58 -17.42 2.57 -793.47 -2.04 -19.46 16 5 C 0.55 18.66 6.89 86.80 0.60 19.26 16 6 O -0.55 -24.18 11.39 -3.86 -0.04 -24.22 16 7 C 0.02 0.51 6.55 41.88 0.27 0.78 16 8 N -0.39 -6.30 4.01 -184.61 -0.74 -7.05 16 9 C 0.07 0.68 11.17 84.94 0.95 1.63 16 10 C 0.12 1.23 7.35 22.57 0.17 1.39 16 11 F -0.11 -1.01 17.28 44.97 0.78 -0.23 16 12 C -0.15 -2.07 10.14 22.53 0.23 -1.84 16 13 C 0.12 2.84 7.31 22.75 0.17 3.00 16 14 F -0.12 -3.64 15.56 44.97 0.70 -2.94 16 15 C 0.15 5.59 3.54 46.38 0.16 5.76 16 16 H 0.12 3.86 7.87 -2.39 -0.02 3.84 16 17 C -0.14 -5.91 6.32 31.78 0.20 -5.71 16 18 C 0.20 10.71 5.38 86.73 0.47 11.18 16 19 N -0.62 -35.42 3.39 -691.99 -2.35 -37.77 16 20 C -0.25 -14.93 10.26 84.03 0.86 -14.07 16 21 H 0.08 4.63 7.84 -2.91 -0.02 4.61 16 22 C -0.07 -3.97 5.48 84.86 0.47 -3.50 16 23 N -0.95 -60.44 10.36 21.65 0.22 -60.21 16 24 Si 0.98 48.30 29.56 68.60 2.03 50.32 16 25 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 26 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 27 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 28 C 0.13 5.97 6.58 86.86 0.57 6.54 16 29 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 1.22 6.37 -2.39 -0.02 1.21 16 34 H 0.12 1.95 5.58 -2.39 -0.01 1.94 16 35 H 0.08 1.47 7.92 -2.39 -0.02 1.45 16 36 H 0.22 0.14 8.06 -2.91 -0.02 0.12 16 37 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 38 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 39 H 0.06 2.82 6.07 -2.38 -0.01 2.81 16 40 H 0.02 1.01 7.55 -2.39 -0.02 0.99 16 41 H 0.00 -0.06 7.37 -2.38 -0.02 -0.08 16 42 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 43 H 0.02 1.13 5.72 -2.39 -0.01 1.11 16 44 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -80.34 358.42 6.02 -74.33 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: 1.03 Total: 3.12 kcal Atomic # 6 Polarization: 17.69 SS G_CDS: 6.42 Total: 24.11 kcal Atomic # 7 Polarization: -119.58 SS G_CDS: -4.90 Total: -124.49 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.04 Total: -24.22 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 1.48 Total: -3.17 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 2.03 Total: 50.32 kcal Total: -80.34 6.02 -74.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267467002.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.328 kcal (2) G-P(sol) polarization free energy of solvation -80.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds