Wall clock time and date at job start Wed Apr 1 2020 00:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.52316 * 2 1 4 4 C 1.53038 * 109.49882 * 120.08189 * 2 1 3 5 5 C 1.53041 * 109.53912 * 58.58698 * 4 2 1 6 6 C 1.53194 * 109.31166 * 61.36201 * 5 4 2 7 7 N 1.46925 * 108.77687 * 305.36743 * 6 5 4 8 8 C 1.34774 * 120.62884 * 233.58074 * 7 6 5 9 9 O 1.21549 * 119.99737 * 182.35941 * 8 7 6 10 10 C 1.47883 * 119.99981 * 2.36834 * 8 7 6 11 11 N 1.32845 * 119.72064 * 323.79292 * 10 8 7 12 12 C 1.31368 * 121.68728 * 180.02562 * 11 10 8 13 13 C 1.39000 * 120.93128 * 0.02562 * 12 11 10 14 14 F 1.35105 * 120.32616 * 179.97438 * 13 12 11 15 15 C 1.38723 * 119.34578 * 0.02562 * 13 12 11 16 16 C 1.38825 * 118.44770 * 359.97438 * 15 13 12 17 17 F 1.35098 * 120.48619 * 180.26944 * 16 15 13 18 18 C 1.46923 * 118.73901 * 53.86082 * 7 6 5 19 19 H 1.09006 * 109.58780 * 65.92201 * 18 7 6 20 20 C 1.52999 * 109.58832 * 186.34862 * 18 7 6 21 21 N 1.46503 * 109.47124 * 286.32918 * 20 18 7 22 22 C 1.36937 * 119.99743 * 180.62716 * 21 20 18 23 23 H 1.08002 * 119.99875 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99973 * 180.02562 * 22 21 20 25 25 N 1.31614 * 120.00118 * 180.02562 * 24 22 21 26 26 Si 1.86805 * 119.99791 * 359.97438 * 24 22 21 27 27 H 1.48496 * 109.46768 * 90.00177 * 26 24 22 28 28 H 1.48499 * 109.46905 * 210.00213 * 26 24 22 29 29 H 1.48500 * 109.47016 * 330.00211 * 26 24 22 30 30 H 1.08994 * 109.47057 * 299.91790 * 1 2 3 31 31 H 1.09004 * 109.47121 * 59.91560 * 1 2 3 32 32 H 1.09003 * 109.46878 * 179.91471 * 1 2 3 33 33 H 1.08997 * 109.46002 * 298.56827 * 4 2 1 34 34 H 1.09000 * 109.46068 * 178.60591 * 4 2 1 35 35 H 1.09006 * 109.49339 * 301.41722 * 5 4 2 36 36 H 1.08993 * 109.49705 * 181.32011 * 5 4 2 37 37 H 1.09000 * 109.58765 * 185.57754 * 6 5 4 38 38 H 1.09002 * 109.58382 * 65.15729 * 6 5 4 39 39 H 1.07997 * 119.52810 * 179.97438 * 12 11 10 40 40 H 1.07998 * 120.77198 * 179.97438 * 15 13 12 41 41 H 1.09000 * 109.46767 * 46.33007 * 20 18 7 42 42 H 1.08994 * 109.47221 * 166.32387 * 20 18 7 43 43 H 0.97000 * 120.00083 * 0.62677 * 21 20 18 44 44 H 0.97004 * 120.00116 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 1.2483 5 6 1.5031 -2.1558 1.2660 6 6 2.0140 -2.9040 0.0306 7 7 1.6515 -2.1381 -1.1696 8 6 0.9748 -2.7220 -2.1784 9 8 0.7183 -2.0897 -3.1842 10 6 0.5443 -4.1319 -2.0613 11 7 1.3243 -5.0093 -1.4395 12 6 0.9803 -6.2709 -1.3138 13 6 -0.2220 -6.7386 -1.8312 14 9 -0.5634 -8.0387 -1.6953 15 6 -1.0675 -5.8574 -2.4894 16 6 -0.6777 -4.5302 -2.6071 17 9 -1.4718 -3.6358 -3.2352 18 6 2.0462 -0.7253 -1.2521 19 1 3.1328 -0.6515 -1.2985 20 6 1.4323 -0.0933 -2.5030 21 7 2.1438 -0.5716 -3.6910 22 6 1.7763 -0.1288 -4.9336 23 1 0.9617 0.5727 -5.0378 24 6 2.4500 -0.5823 -6.0593 25 7 2.0972 -0.1563 -7.2536 26 14 3.8585 -1.7962 -5.8790 27 1 3.3287 -3.1819 -5.9429 28 1 4.8349 -1.5882 -6.9784 29 1 4.5313 -1.5831 -4.5725 30 1 -0.3633 0.5125 0.8907 31 1 -0.3633 0.5152 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6988 -0.1959 2.1388 34 1 3.1306 -0.7444 1.2352 35 1 0.4133 -2.1354 1.2540 36 1 1.8481 -2.6628 2.1670 37 1 1.5555 -3.8918 -0.0139 38 1 3.0980 -3.0043 0.0866 39 1 1.6415 -6.9544 -0.8019 40 1 -2.0069 -6.1961 -2.9007 41 1 0.3809 -0.3723 -2.5722 42 1 1.5170 0.9915 -2.4409 43 1 2.8751 -1.2019 -3.5974 44 1 2.5682 -0.4730 -8.0402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271718599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:43 Heat of formation + Delta-G solvation = -17.018580 kcal Electronic energy + Delta-G solvation = -31555.523547 eV Core-core repulsion = 27146.788265 eV Total energy + Delta-G solvation = -4408.735282 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -49.44912 -49.09106 -40.96377 -39.69845 -37.37998 -34.75542 -33.56356 -32.53813 -32.11228 -31.03076 -30.46850 -27.36084 -26.25003 -25.01817 -24.26059 -23.80219 -22.42097 -21.41142 -20.47010 -18.78236 -18.45660 -18.34233 -17.64517 -16.86869 -16.55953 -16.15212 -15.69380 -15.65553 -15.39890 -15.10253 -14.97638 -14.73896 -14.22323 -13.98287 -13.93016 -13.71568 -13.56322 -13.27900 -12.85356 -12.81050 -12.61913 -12.59393 -12.46053 -12.14506 -11.63657 -11.47974 -11.24323 -11.02705 -10.76012 -10.69665 -10.52268 -10.25658 -10.21092 -9.99884 -9.81367 -9.41102 -9.21204 -8.79968 -8.61232 -8.19158 -6.85096 -5.57752 -2.81520 0.17000 0.53190 2.66811 3.01621 3.32452 3.43803 3.48441 3.53182 3.55303 3.73841 4.00437 4.23717 4.30518 4.67237 4.76383 4.77519 4.83748 4.85158 5.03651 5.11382 5.27911 5.29063 5.38282 5.50042 5.53417 5.64603 5.74514 5.76430 5.79858 5.83005 5.90269 5.94886 6.03123 6.11807 6.18448 6.23095 6.26839 6.46122 6.57766 6.79982 7.15145 7.19123 7.69515 8.18520 8.56296 8.62136 9.41310 10.14571 10.34986 11.61892 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008865 B = 0.005834 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3157.775938 B = 4798.026650 C = 6676.178482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.082 0.918 4 C -0.113 4.113 5 C -0.139 4.139 6 C 0.101 3.899 7 N -0.594 5.594 8 C 0.524 3.476 9 O -0.422 6.422 10 C 0.053 3.947 11 N -0.401 5.401 12 C 0.057 3.943 13 C 0.089 3.911 14 F -0.121 7.121 15 C -0.155 4.155 16 C 0.135 3.865 17 F -0.097 7.097 18 C 0.143 3.857 19 H 0.072 0.928 20 C 0.162 3.838 21 N -0.722 5.722 22 C -0.203 4.203 23 H 0.088 0.912 24 C -0.004 4.004 25 N -0.940 5.940 26 Si 0.882 3.118 27 H -0.289 1.289 28 H -0.294 1.294 29 H -0.281 1.281 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.179 0.821 40 H 0.165 0.835 41 H 0.055 0.945 42 H 0.025 0.975 43 H 0.356 0.644 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.093 -11.463 21.369 24.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 H 0.100 0.900 4 C -0.151 4.151 5 C -0.177 4.177 6 C -0.022 4.022 7 N -0.331 5.331 8 C 0.306 3.694 9 O -0.288 6.288 10 C -0.086 4.086 11 N -0.112 5.112 12 C -0.104 4.104 13 C 0.067 3.933 14 F -0.099 7.099 15 C -0.182 4.182 16 C 0.112 3.888 17 F -0.075 7.075 18 C 0.040 3.960 19 H 0.089 0.911 20 C 0.035 3.965 21 N -0.366 5.366 22 C -0.333 4.333 23 H 0.105 0.895 24 C -0.198 4.198 25 N -0.590 5.590 26 Si 0.714 3.286 27 H -0.217 1.217 28 H -0.221 1.221 29 H -0.208 1.208 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.123 0.877 38 H 0.083 0.917 39 H 0.196 0.804 40 H 0.183 0.817 41 H 0.072 0.928 42 H 0.042 0.958 43 H 0.188 0.812 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.621 -10.624 20.884 23.709 hybrid contribution 0.103 -1.637 -0.402 1.689 sum -3.518 -12.261 20.482 24.130 Atomic orbital electron populations 1.21852 0.94792 1.01932 1.01666 1.21535 0.96738 0.99452 0.94118 0.89963 1.21543 1.00475 0.95517 0.97539 1.22015 1.01444 0.96321 0.97898 1.22082 1.00501 0.96162 0.83416 1.47627 1.56483 1.10991 1.17981 1.17712 0.82677 0.84320 0.84676 1.91367 1.50013 1.60090 1.27370 1.21969 0.91514 0.96836 0.98296 1.67956 1.30189 1.01594 1.11418 1.23102 0.94210 0.93058 1.00051 1.18670 0.95459 0.79328 0.99893 1.91564 1.92143 1.32558 1.93633 1.21645 1.02832 0.91595 1.02100 1.18283 0.89541 0.86916 0.94105 1.91677 1.71457 1.65973 1.78359 1.21715 0.98878 0.79265 0.96139 0.91053 1.20959 0.97157 0.94640 0.83717 1.42638 1.38145 1.53014 1.02754 1.19010 1.12875 1.19399 0.82055 0.89467 1.24555 0.99747 1.00357 0.95172 1.69695 1.43822 1.48496 0.97010 0.86553 0.83303 0.82313 0.76399 1.21652 1.22094 1.20804 0.93177 0.91838 0.92652 0.91945 0.91874 0.91482 0.91292 0.87734 0.91700 0.80361 0.81724 0.92799 0.95767 0.81154 0.93456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.24 37.16 0.31 -1.46 16 2 C -0.10 -1.20 2.78 -90.27 -0.25 -1.45 16 3 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.11 -1.10 5.43 -26.69 -0.14 -1.25 16 5 C -0.14 -1.32 5.74 -26.61 -0.15 -1.47 16 6 C 0.10 1.19 5.98 -3.71 -0.02 1.16 16 7 N -0.59 -9.17 2.40 -166.05 -0.40 -9.57 16 8 C 0.52 9.60 7.09 -12.31 -0.09 9.51 16 9 O -0.42 -9.73 9.79 5.32 0.05 -9.68 16 10 C 0.05 0.82 6.10 -82.96 -0.51 0.32 16 11 N -0.40 -5.10 7.07 -9.70 -0.07 -5.17 16 12 C 0.06 0.55 11.17 -17.47 -0.20 0.36 16 13 C 0.09 0.87 7.35 -39.12 -0.29 0.58 16 14 F -0.12 -1.11 17.28 2.25 0.04 -1.07 16 15 C -0.15 -1.68 10.14 -39.18 -0.40 -2.07 16 16 C 0.13 1.95 7.27 -38.84 -0.28 1.66 16 17 F -0.10 -1.64 16.14 2.25 0.04 -1.60 16 18 C 0.14 2.27 2.63 -67.38 -0.18 2.09 16 19 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 20 C 0.16 3.32 3.95 -4.04 -0.02 3.31 16 21 N -0.72 -18.33 3.09 -59.91 -0.18 -18.52 16 22 C -0.20 -6.10 10.02 -15.06 -0.15 -6.25 16 23 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 24 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 25 N -0.94 -31.17 13.97 55.49 0.78 -30.40 16 26 Si 0.88 24.08 27.74 -169.99 -4.71 19.36 16 27 H -0.29 -8.01 7.11 56.52 0.40 -7.61 16 28 H -0.29 -8.01 7.11 56.52 0.40 -7.61 16 29 H -0.28 -7.26 6.52 56.52 0.37 -6.89 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.88 6.70 -51.93 -0.35 0.53 16 32 H 0.05 0.71 5.97 -51.93 -0.31 0.40 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.67 6.34 -51.93 -0.33 0.34 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.11 1.19 4.48 -51.93 -0.23 0.95 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.05 1.19 5.26 -51.93 -0.27 0.92 16 42 H 0.02 0.50 8.09 -51.93 -0.42 0.08 16 43 H 0.36 9.12 5.37 -40.82 -0.22 8.91 16 44 H 0.26 8.09 8.31 -40.82 -0.34 7.76 16 LS Contribution 349.28 15.07 5.26 5.26 Total: -1.00 -35.53 349.28 -7.19 -42.72 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -5.53 Total: 3.85 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -2.46 Total: 4.81 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: 0.12 Total: -63.65 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.05 Total: -9.68 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.08 Total: -2.67 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -4.71 Total: 19.36 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.53 -7.19 -42.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271718599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.701 kcal (2) G-P(sol) polarization free energy of solvation -35.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds