Wall clock time and date at job start Wed Apr 1 2020 00:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.52316 * 2 1 4 4 C 1.53038 * 109.49882 * 120.08189 * 2 1 3 5 5 C 1.53041 * 109.53912 * 58.58698 * 4 2 1 6 6 C 1.53194 * 109.31166 * 61.36201 * 5 4 2 7 7 N 1.46925 * 108.77687 * 305.36743 * 6 5 4 8 8 C 1.34774 * 120.62884 * 233.58074 * 7 6 5 9 9 O 1.21549 * 119.99737 * 182.35941 * 8 7 6 10 10 C 1.47883 * 119.99981 * 2.36834 * 8 7 6 11 11 N 1.32845 * 119.72064 * 323.79292 * 10 8 7 12 12 C 1.31368 * 121.68728 * 180.02562 * 11 10 8 13 13 C 1.39000 * 120.93128 * 0.02562 * 12 11 10 14 14 F 1.35105 * 120.32616 * 179.97438 * 13 12 11 15 15 C 1.38723 * 119.34578 * 0.02562 * 13 12 11 16 16 C 1.38825 * 118.44770 * 359.97438 * 15 13 12 17 17 F 1.35098 * 120.48619 * 180.26944 * 16 15 13 18 18 C 1.46923 * 118.73901 * 53.86082 * 7 6 5 19 19 H 1.09006 * 109.58780 * 65.92201 * 18 7 6 20 20 C 1.52999 * 109.58832 * 186.34862 * 18 7 6 21 21 N 1.46503 * 109.47124 * 286.32918 * 20 18 7 22 22 C 1.36937 * 119.99743 * 180.62716 * 21 20 18 23 23 H 1.08002 * 119.99875 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99973 * 180.02562 * 22 21 20 25 25 N 1.31614 * 120.00118 * 180.02562 * 24 22 21 26 26 Si 1.86805 * 119.99791 * 359.97438 * 24 22 21 27 27 H 1.48496 * 109.46768 * 90.00177 * 26 24 22 28 28 H 1.48499 * 109.46905 * 210.00213 * 26 24 22 29 29 H 1.48500 * 109.47016 * 330.00211 * 26 24 22 30 30 H 1.08994 * 109.47057 * 299.91790 * 1 2 3 31 31 H 1.09004 * 109.47121 * 59.91560 * 1 2 3 32 32 H 1.09003 * 109.46878 * 179.91471 * 1 2 3 33 33 H 1.08997 * 109.46002 * 298.56827 * 4 2 1 34 34 H 1.09000 * 109.46068 * 178.60591 * 4 2 1 35 35 H 1.09006 * 109.49339 * 301.41722 * 5 4 2 36 36 H 1.08993 * 109.49705 * 181.32011 * 5 4 2 37 37 H 1.09000 * 109.58765 * 185.57754 * 6 5 4 38 38 H 1.09002 * 109.58382 * 65.15729 * 6 5 4 39 39 H 1.07997 * 119.52810 * 179.97438 * 12 11 10 40 40 H 1.07998 * 120.77198 * 179.97438 * 15 13 12 41 41 H 1.09000 * 109.46767 * 46.33007 * 20 18 7 42 42 H 1.08994 * 109.47221 * 166.32387 * 20 18 7 43 43 H 0.97000 * 120.00083 * 0.62677 * 21 20 18 44 44 H 0.97004 * 120.00116 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 1.2483 5 6 1.5031 -2.1558 1.2660 6 6 2.0140 -2.9040 0.0306 7 7 1.6515 -2.1381 -1.1696 8 6 0.9748 -2.7220 -2.1784 9 8 0.7183 -2.0897 -3.1842 10 6 0.5443 -4.1319 -2.0613 11 7 1.3243 -5.0093 -1.4395 12 6 0.9803 -6.2709 -1.3138 13 6 -0.2220 -6.7386 -1.8312 14 9 -0.5634 -8.0387 -1.6953 15 6 -1.0675 -5.8574 -2.4894 16 6 -0.6777 -4.5302 -2.6071 17 9 -1.4718 -3.6358 -3.2352 18 6 2.0462 -0.7253 -1.2521 19 1 3.1328 -0.6515 -1.2985 20 6 1.4323 -0.0933 -2.5030 21 7 2.1438 -0.5716 -3.6910 22 6 1.7763 -0.1288 -4.9336 23 1 0.9617 0.5727 -5.0378 24 6 2.4500 -0.5823 -6.0593 25 7 2.0972 -0.1563 -7.2536 26 14 3.8585 -1.7962 -5.8790 27 1 3.3287 -3.1819 -5.9429 28 1 4.8349 -1.5882 -6.9784 29 1 4.5313 -1.5831 -4.5725 30 1 -0.3633 0.5125 0.8907 31 1 -0.3633 0.5152 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6988 -0.1959 2.1388 34 1 3.1306 -0.7444 1.2352 35 1 0.4133 -2.1354 1.2540 36 1 1.8481 -2.6628 2.1670 37 1 1.5555 -3.8918 -0.0139 38 1 3.0980 -3.0043 0.0866 39 1 1.6415 -6.9544 -0.8019 40 1 -2.0069 -6.1961 -2.9007 41 1 0.3809 -0.3723 -2.5722 42 1 1.5170 0.9915 -2.4409 43 1 2.8751 -1.2019 -3.5974 44 1 2.5682 -0.4730 -8.0402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271718599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:42 Heat of formation + Delta-G solvation = -40.716528 kcal Electronic energy + Delta-G solvation = -31556.551168 eV Core-core repulsion = 27146.788265 eV Total energy + Delta-G solvation = -4409.762902 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.28509 -50.25444 -42.13461 -40.77212 -38.61658 -36.55883 -34.78884 -33.82328 -33.51592 -32.22892 -32.00658 -28.75498 -27.32735 -26.32704 -25.38301 -24.87517 -24.01636 -22.80606 -21.70040 -20.03832 -19.62963 -19.42683 -19.12817 -18.20447 -17.56650 -17.14404 -16.91765 -16.78990 -16.58304 -16.50847 -16.16385 -15.83572 -15.67922 -15.45938 -15.10633 -14.90988 -14.78363 -14.59213 -14.29905 -14.05755 -13.98496 -13.85691 -13.60822 -13.51478 -13.14185 -12.95333 -12.64832 -12.41030 -12.17823 -11.97976 -11.86283 -11.74108 -11.44452 -11.30665 -11.16757 -10.96947 -10.82784 -10.28630 -10.01063 -9.53963 -8.95840 -7.95829 -5.18820 -0.81837 -0.38702 1.26292 1.32453 1.38577 1.56216 1.83749 2.22954 2.46820 2.49720 2.74916 2.97909 3.32749 3.36448 3.38863 3.60782 3.70110 3.82452 3.94386 4.10099 4.19552 4.22658 4.28093 4.30459 4.39604 4.54929 4.59208 4.67021 4.76646 4.83291 4.90861 5.01222 5.03540 5.11928 5.21289 5.24660 5.28350 5.32146 5.34758 5.55855 5.77032 5.81002 6.21646 6.27304 6.44846 7.15296 7.25741 7.94383 8.12758 9.28033 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008865 B = 0.005834 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3157.775938 B = 4798.026650 C = 6676.178482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 H 0.090 0.910 4 C -0.107 4.107 5 C -0.132 4.132 6 C 0.095 3.905 7 N -0.588 5.588 8 C 0.524 3.476 9 O -0.490 6.490 10 C 0.030 3.970 11 N -0.404 5.404 12 C 0.076 3.924 13 C 0.110 3.890 14 F -0.108 7.108 15 C -0.144 4.144 16 C 0.109 3.891 17 F -0.123 7.123 18 C 0.146 3.854 19 H 0.073 0.927 20 C 0.166 3.834 21 N -0.724 5.724 22 C -0.187 4.187 23 H 0.047 0.953 24 C -0.075 4.075 25 N -0.994 5.994 26 Si 0.953 3.047 27 H -0.296 1.296 28 H -0.292 1.292 29 H -0.257 1.257 30 H 0.075 0.925 31 H 0.035 0.965 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.076 0.924 39 H 0.224 0.776 40 H 0.189 0.811 41 H 0.033 0.967 42 H 0.019 0.981 43 H 0.356 0.644 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.723 -14.736 25.758 29.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 H 0.109 0.891 4 C -0.145 4.145 5 C -0.170 4.170 6 C -0.026 4.026 7 N -0.323 5.323 8 C 0.308 3.692 9 O -0.362 6.362 10 C -0.107 4.107 11 N -0.115 5.115 12 C -0.086 4.086 13 C 0.088 3.912 14 F -0.086 7.086 15 C -0.171 4.171 16 C 0.086 3.914 17 F -0.101 7.101 18 C 0.043 3.957 19 H 0.091 0.909 20 C 0.040 3.960 21 N -0.368 5.368 22 C -0.319 4.319 23 H 0.065 0.935 24 C -0.265 4.265 25 N -0.648 5.648 26 Si 0.783 3.217 27 H -0.223 1.223 28 H -0.219 1.219 29 H -0.182 1.182 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.118 0.882 37 H 0.129 0.871 38 H 0.094 0.906 39 H 0.241 0.759 40 H 0.207 0.793 41 H 0.051 0.949 42 H 0.037 0.963 43 H 0.188 0.812 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.245 -13.913 25.401 29.048 hybrid contribution -0.502 -0.848 -1.553 1.839 sum -2.747 -14.761 23.848 28.181 Atomic orbital electron populations 1.21804 0.95077 1.01348 1.01556 1.21541 0.96393 0.99835 0.93504 0.89140 1.21535 1.01001 0.95412 0.96509 1.21997 1.01107 0.96141 0.97753 1.22395 1.01286 0.96387 0.82560 1.47837 1.55022 1.10925 1.18515 1.18257 0.81275 0.85465 0.84232 1.91344 1.53216 1.61879 1.29713 1.21554 0.92529 0.96041 1.00613 1.67956 1.29668 1.02516 1.11398 1.23821 0.94303 0.92213 0.98287 1.18645 0.94912 0.79378 0.98223 1.91615 1.92011 1.31706 1.93295 1.21856 1.03880 0.90006 1.01337 1.18585 0.89688 0.87993 0.95098 1.91612 1.72133 1.67165 1.79181 1.21645 0.98571 0.80009 0.95496 0.90883 1.20952 0.96139 0.94452 0.84444 1.42514 1.38623 1.53273 1.02365 1.18910 1.10913 1.17695 0.84335 0.93524 1.25291 1.03272 1.03119 0.94778 1.69880 1.46035 1.51035 0.97832 0.85408 0.79979 0.79011 0.77331 1.22338 1.21866 1.18241 0.90571 0.94632 0.93473 0.89611 0.90942 0.92015 0.88158 0.87108 0.90611 0.75919 0.79349 0.94877 0.96297 0.81214 0.93888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.24 71.98 0.59 -2.75 16 2 C -0.09 -2.10 2.78 -10.57 -0.03 -2.13 16 3 H 0.09 1.92 8.14 -2.39 -0.02 1.91 16 4 C -0.11 -1.66 5.43 30.62 0.17 -1.49 16 5 C -0.13 -1.97 5.74 30.67 0.18 -1.79 16 6 C 0.09 1.93 5.98 86.36 0.52 2.45 16 7 N -0.59 -17.69 2.40 -797.55 -1.91 -19.61 16 8 C 0.52 19.58 7.09 86.80 0.62 20.19 16 9 O -0.49 -23.95 9.79 -3.87 -0.04 -23.99 16 10 C 0.03 0.91 6.10 41.88 0.26 1.16 16 11 N -0.40 -9.13 7.07 -184.60 -1.31 -10.43 16 12 C 0.08 1.12 11.17 84.94 0.95 2.07 16 13 C 0.11 1.70 7.35 22.57 0.17 1.87 16 14 F -0.11 -1.46 17.28 44.97 0.78 -0.69 16 15 C -0.14 -2.80 10.14 22.53 0.23 -2.57 16 16 C 0.11 3.15 7.27 22.75 0.17 3.32 16 17 F -0.12 -4.42 16.14 44.97 0.73 -3.69 16 18 C 0.15 4.58 2.63 45.12 0.12 4.70 16 19 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 20 C 0.17 7.17 3.95 86.38 0.34 7.51 16 21 N -0.72 -38.42 3.09 -343.45 -1.06 -39.48 16 22 C -0.19 -11.92 10.02 84.03 0.84 -11.08 16 23 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 24 C -0.08 -4.92 5.50 84.86 0.47 -4.45 16 25 N -0.99 -69.55 13.97 21.65 0.30 -69.25 16 26 Si 0.95 51.62 27.74 68.60 1.90 53.52 16 27 H -0.30 -16.17 7.11 99.48 0.71 -15.46 16 28 H -0.29 -15.53 7.11 99.48 0.71 -14.83 16 29 H -0.26 -12.69 6.52 99.48 0.65 -12.04 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.03 1.03 6.70 -2.38 -0.02 1.01 16 32 H 0.05 1.19 5.97 -2.39 -0.01 1.17 16 33 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 1.03 6.34 -2.38 -0.02 1.01 16 36 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.11 2.15 4.48 -2.39 -0.01 2.14 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.22 1.29 8.06 -2.91 -0.02 1.27 16 40 H 0.19 2.66 8.06 -2.91 -0.02 2.64 16 41 H 0.03 1.60 5.26 -2.39 -0.01 1.59 16 42 H 0.02 0.83 8.09 -2.39 -0.02 0.81 16 43 H 0.36 18.55 5.37 -92.71 -0.50 18.05 16 44 H 0.25 16.82 8.31 -92.71 -0.77 16.05 16 Total: -1.00 -85.46 349.28 5.46 -80.00 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.50 Total: 16.59 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: 5.57 Total: 17.01 kcal Atomic # 7 Polarization: -134.78 SS G_CDS: -3.98 Total: -138.76 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.04 Total: -23.99 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 1.50 Total: -4.38 kcal Atomic # 14 Polarization: 51.62 SS G_CDS: 1.90 Total: 53.52 kcal Total: -85.46 5.46 -80.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271718599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.288 kcal (2) G-P(sol) polarization free energy of solvation -85.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds