Wall clock time and date at job start Wed Apr 1 2020 00:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.49811 * 2 1 4 4 C 1.53034 * 109.52214 * 120.08446 * 2 1 3 5 5 C 1.53043 * 109.53557 * 181.32837 * 4 2 1 6 6 C 1.53188 * 109.31291 * 298.63666 * 5 4 2 7 7 N 1.46921 * 108.77977 * 54.63480 * 6 5 4 8 8 C 1.34780 * 120.63640 * 126.38848 * 7 6 5 9 9 O 1.21548 * 120.00130 * 186.28576 * 8 7 6 10 10 C 1.47884 * 119.99316 * 6.28231 * 8 7 6 11 11 N 1.32843 * 119.72453 * 36.65463 * 10 8 7 12 12 C 1.31367 * 121.68960 * 179.97438 * 11 10 8 13 13 C 1.38999 * 120.93166 * 0.02562 * 12 11 10 14 14 F 1.35108 * 120.32722 * 179.97438 * 13 12 11 15 15 C 1.38716 * 119.34744 * 359.97438 * 13 12 11 16 16 C 1.38845 * 118.44494 * 359.72984 * 15 13 12 17 17 F 1.35102 * 120.48653 * 180.28259 * 16 15 13 18 18 C 1.46925 * 118.73837 * 306.39357 * 7 6 5 19 19 H 1.09000 * 109.70473 * 293.74929 * 18 7 6 20 20 C 1.53001 * 109.59105 * 173.39375 * 18 7 6 21 21 N 1.46491 * 109.47155 * 70.03142 * 20 18 7 22 22 C 1.36942 * 120.00223 * 177.69900 * 21 20 18 23 23 H 1.07997 * 119.99863 * 359.97438 * 22 21 20 24 24 C 1.38813 * 120.00037 * 180.02562 * 22 21 20 25 25 N 1.31619 * 120.00134 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99708 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47475 * 89.99507 * 26 24 22 28 28 H 1.48500 * 109.46933 * 209.99861 * 26 24 22 29 29 H 1.48502 * 109.47039 * 329.99384 * 26 24 22 30 30 H 1.08996 * 109.47625 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46830 * 300.06384 * 1 2 3 32 32 H 1.08998 * 109.47379 * 60.05528 * 1 2 3 33 33 H 1.08995 * 109.46367 * 301.34725 * 4 2 1 34 34 H 1.09005 * 109.46052 * 61.31420 * 4 2 1 35 35 H 1.09001 * 109.50026 * 58.58904 * 5 4 2 36 36 H 1.08999 * 109.49846 * 178.68457 * 5 4 2 37 37 H 1.09007 * 109.58796 * 174.42376 * 6 5 4 38 38 H 1.09004 * 109.59211 * 294.69874 * 6 5 4 39 39 H 1.07996 * 119.52864 * 179.97438 * 12 11 10 40 40 H 1.07995 * 120.78078 * 180.02562 * 15 13 12 41 41 H 1.09003 * 109.47220 * 190.03647 * 20 18 7 42 42 H 1.09008 * 109.46821 * 310.03371 * 20 18 7 43 43 H 0.97005 * 120.00386 * 357.69252 * 21 20 18 44 44 H 0.96999 * 119.99551 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7230 1.2481 5 6 3.5715 -0.6943 1.2652 6 6 4.1058 -1.4256 0.0298 7 7 3.5046 -0.8282 -1.1703 8 6 4.2806 -0.3845 -2.1791 9 8 3.7808 0.2101 -3.1140 10 6 5.7400 -0.6211 -2.1482 11 7 6.2123 -1.7607 -1.6550 12 6 7.5010 -2.0113 -1.6093 13 6 8.4259 -1.0859 -2.0786 14 9 9.7486 -1.3562 -2.0252 15 6 7.9776 0.1179 -2.6022 16 6 6.6097 0.3526 -2.6433 17 9 6.1276 1.5085 -3.1500 18 6 2.0412 -0.7234 -1.2499 19 1 1.6036 -1.7204 -1.2997 20 6 1.6509 0.0709 -2.4980 21 7 1.9407 -0.7245 -3.6935 22 6 1.6289 -0.2350 -4.9338 23 1 1.1689 0.7373 -5.0306 24 6 1.9031 -0.9890 -6.0666 25 7 2.4632 -2.1742 -5.9486 26 14 1.4770 -0.3215 -7.7585 27 1 2.6307 0.4456 -8.2930 28 1 1.1669 -1.4503 -8.6722 29 1 0.2945 0.5708 -7.6551 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5149 0.8895 32 1 -0.3634 0.5130 -0.8904 33 1 1.6589 -0.2247 2.1388 34 1 1.6978 -1.7574 1.2349 35 1 3.9161 0.3397 1.2534 36 1 3.9345 -1.1890 2.1661 37 1 5.1901 -1.3231 -0.0151 38 1 3.8408 -2.4814 0.0869 39 1 7.8466 -2.9493 -1.2007 40 1 8.6758 0.8533 -2.9735 41 1 0.5860 0.3010 -2.4639 42 1 2.2222 0.9987 -2.5315 43 1 2.3536 -1.5980 -3.6066 44 1 2.6544 -2.7012 -6.7402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271718600.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:47 Heat of formation + Delta-G solvation = -49.329121 kcal Electronic energy + Delta-G solvation = -31202.178879 eV Core-core repulsion = 26792.042507 eV Total energy + Delta-G solvation = -4410.136372 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.25950 -50.22858 -41.98545 -40.67071 -38.49384 -36.40736 -34.89901 -33.69636 -33.53472 -32.18090 -31.79760 -28.58960 -27.09934 -26.27323 -25.42994 -24.81189 -23.91327 -22.35601 -21.67238 -20.70038 -19.42109 -19.38144 -19.04229 -18.12602 -17.52883 -17.12643 -16.84802 -16.64288 -16.56038 -16.52208 -16.06065 -15.65376 -15.55826 -15.50189 -15.06876 -14.95222 -14.62019 -14.43696 -14.18545 -13.97531 -13.75528 -13.73602 -13.60292 -13.33965 -12.96255 -12.85501 -12.76960 -12.47876 -12.12880 -11.93066 -11.86391 -11.62010 -11.59832 -11.20858 -11.11809 -10.94207 -10.91065 -10.23389 -9.96751 -9.48227 -8.66106 -7.85531 -5.05070 -0.76845 -0.33757 1.40983 1.44731 1.52228 1.61979 1.91210 2.27633 2.50407 2.60025 2.78869 3.07109 3.36305 3.42117 3.48251 3.74631 3.76024 3.85971 3.95625 4.14504 4.20851 4.30436 4.33610 4.39013 4.42631 4.56821 4.59054 4.69402 4.82264 4.86242 4.91611 4.98192 5.07044 5.11886 5.24558 5.26830 5.29776 5.31591 5.43215 5.51195 5.55536 5.81275 6.29993 6.35413 6.50946 7.31508 7.41834 8.19867 8.42946 9.39089 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008160 B = 0.005627 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3430.735275 B = 4974.999132 C = 7538.229525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.065 0.935 4 C -0.107 4.107 5 C -0.129 4.129 6 C 0.109 3.891 7 N -0.594 5.594 8 C 0.525 3.475 9 O -0.485 6.485 10 C 0.036 3.964 11 N -0.408 5.408 12 C 0.075 3.925 13 C 0.108 3.892 14 F -0.108 7.108 15 C -0.143 4.143 16 C 0.107 3.893 17 F -0.122 7.122 18 C 0.153 3.847 19 H 0.063 0.937 20 C 0.159 3.841 21 N -0.706 5.706 22 C -0.206 4.206 23 H 0.062 0.938 24 C -0.086 4.086 25 N -0.974 5.974 26 Si 0.965 3.035 27 H -0.297 1.297 28 H -0.293 1.293 29 H -0.270 1.270 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.221 0.779 40 H 0.191 0.809 41 H 0.022 0.978 42 H 0.023 0.977 43 H 0.365 0.635 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.888 1.406 20.749 23.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 H 0.083 0.917 4 C -0.144 4.144 5 C -0.167 4.167 6 C -0.013 4.013 7 N -0.329 5.329 8 C 0.310 3.690 9 O -0.356 6.356 10 C -0.102 4.102 11 N -0.119 5.119 12 C -0.088 4.088 13 C 0.086 3.914 14 F -0.086 7.086 15 C -0.169 4.169 16 C 0.084 3.916 17 F -0.101 7.101 18 C 0.050 3.950 19 H 0.081 0.919 20 C 0.033 3.967 21 N -0.346 5.346 22 C -0.338 4.338 23 H 0.080 0.920 24 C -0.276 4.276 25 N -0.627 5.627 26 Si 0.796 3.204 27 H -0.225 1.225 28 H -0.220 1.220 29 H -0.195 1.195 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.237 0.763 40 H 0.209 0.791 41 H 0.040 0.960 42 H 0.041 0.959 43 H 0.196 0.804 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 9.895 1.337 20.398 22.711 hybrid contribution 0.793 0.775 -2.075 2.353 sum 10.688 2.113 18.323 21.318 Atomic orbital electron populations 1.21821 0.93454 1.02464 1.02308 1.21433 0.96771 0.99278 0.93607 0.91685 1.21569 0.95145 1.01088 0.96644 1.21962 0.96190 1.00893 0.97692 1.22036 0.99039 0.97324 0.82859 1.47746 1.05794 1.60904 1.18446 1.18155 0.85173 0.82363 0.83353 1.91215 1.71496 1.38710 1.34174 1.21552 0.95293 0.91978 1.01399 1.67981 1.16019 1.16108 1.11746 1.23769 0.86304 1.00931 0.97766 1.18626 0.79496 0.94178 0.99123 1.91607 1.29865 1.93512 1.93660 1.21832 0.93628 0.99626 1.01838 1.18573 0.92371 0.83574 0.97033 1.91587 1.88683 1.45701 1.84090 1.21482 0.78935 0.98941 0.95650 0.91896 1.21048 0.95727 0.94726 0.85170 1.42338 1.72248 1.18655 1.01381 1.19450 1.29257 0.99635 0.85507 0.92014 1.25373 1.03758 0.97634 1.00859 1.69828 1.51758 1.13052 1.28067 0.85225 0.77625 0.76839 0.80721 1.22549 1.21968 1.19477 0.92198 0.90146 0.93640 0.89384 0.91117 0.92367 0.87846 0.88895 0.90930 0.76291 0.79143 0.96041 0.95903 0.80351 0.94716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.98 71.98 0.65 -2.62 16 2 C -0.09 -2.30 2.34 -10.72 -0.03 -2.33 16 3 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 4 C -0.11 -1.94 5.17 30.62 0.16 -1.78 16 5 C -0.13 -2.29 6.08 30.67 0.19 -2.10 16 6 C 0.11 2.63 5.81 86.36 0.50 3.13 16 7 N -0.59 -20.29 2.97 -798.36 -2.37 -22.67 16 8 C 0.53 21.82 6.81 86.80 0.59 22.41 16 9 O -0.49 -25.29 9.88 -3.87 -0.04 -25.33 16 10 C 0.04 1.22 5.87 41.88 0.25 1.46 16 11 N -0.41 -11.20 7.56 -184.61 -1.40 -12.60 16 12 C 0.07 1.42 11.17 84.94 0.95 2.37 16 13 C 0.11 2.00 7.35 22.57 0.17 2.16 16 14 F -0.11 -1.74 17.28 44.97 0.78 -0.96 16 15 C -0.14 -3.11 10.14 22.53 0.23 -2.88 16 16 C 0.11 3.38 7.27 22.75 0.17 3.55 16 17 F -0.12 -4.56 16.14 44.97 0.73 -3.83 16 18 C 0.15 5.36 2.38 44.98 0.11 5.46 16 19 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 20 C 0.16 7.28 4.80 86.38 0.41 7.69 16 21 N -0.71 -40.02 3.27 -343.45 -1.12 -41.14 16 22 C -0.21 -12.80 9.61 84.03 0.81 -11.99 16 23 H 0.06 3.79 7.83 -2.91 -0.02 3.76 16 24 C -0.09 -5.41 5.50 84.86 0.47 -4.94 16 25 N -0.97 -64.75 13.06 21.65 0.28 -64.47 16 26 Si 0.97 50.94 29.55 68.60 2.03 52.97 16 27 H -0.30 -15.72 7.11 99.48 0.71 -15.01 16 28 H -0.29 -15.24 7.11 99.48 0.71 -14.53 16 29 H -0.27 -13.42 7.11 99.48 0.71 -12.71 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.04 1.22 6.42 -2.39 -0.02 1.20 16 33 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.09 2.15 5.06 -2.38 -0.01 2.14 16 38 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.22 2.26 8.06 -2.91 -0.02 2.23 16 40 H 0.19 2.99 8.06 -2.91 -0.02 2.97 16 41 H 0.02 0.98 6.23 -2.39 -0.01 0.96 16 42 H 0.02 1.17 6.24 -2.38 -0.01 1.15 16 43 H 0.37 22.27 7.24 -92.70 -0.67 21.60 16 44 H 0.24 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -81.46 357.05 4.87 -76.60 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.38 Total: 21.85 kcal Atomic # 6 Polarization: 13.98 SS G_CDS: 5.61 Total: 19.59 kcal Atomic # 7 Polarization: -136.27 SS G_CDS: -4.61 Total: -140.88 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.04 Total: -25.33 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 1.50 Total: -4.79 kcal Atomic # 14 Polarization: 50.94 SS G_CDS: 2.03 Total: 52.97 kcal Total: -81.46 4.87 -76.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271718600.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.266 kcal (2) G-P(sol) polarization free energy of solvation -81.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds