Wall clock time and date at job start Wed Apr 1 2020 00:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.53034 * 2 1 4 4 C 1.53042 * 109.50104 * 239.91335 * 2 1 3 5 5 C 1.53036 * 109.54179 * 178.68285 * 4 2 1 6 6 C 1.52767 * 109.38200 * 61.24609 * 5 4 2 7 7 N 1.46933 * 109.00596 * 305.58689 * 6 5 4 8 8 C 1.34769 * 120.62843 * 233.58693 * 7 6 5 9 9 O 1.21555 * 120.00035 * 182.23962 * 8 7 6 10 10 C 1.47880 * 120.00555 * 2.22955 * 8 7 6 11 11 N 1.32843 * 119.71929 * 323.52696 * 10 8 7 12 12 C 1.31369 * 121.68935 * 180.02562 * 11 10 8 13 13 C 1.39001 * 120.93354 * 0.02562 * 12 11 10 14 14 F 1.35103 * 120.33107 * 180.02562 * 13 12 11 15 15 C 1.38720 * 119.34172 * 359.97438 * 13 12 11 16 16 C 1.38843 * 118.44860 * 0.25274 * 15 13 12 17 17 F 1.35095 * 120.48664 * 179.72623 * 16 15 13 18 18 C 1.46923 * 118.73765 * 53.30972 * 7 6 5 19 19 H 1.08998 * 109.58870 * 66.42567 * 18 7 6 20 20 C 1.52997 * 109.58570 * 186.85630 * 18 7 6 21 21 N 1.46501 * 109.47315 * 286.31332 * 20 18 7 22 22 C 1.36930 * 120.00344 * 180.59532 * 21 20 18 23 23 H 1.07999 * 119.99821 * 0.02562 * 22 21 20 24 24 C 1.38811 * 120.00043 * 179.97438 * 22 21 20 25 25 N 1.31616 * 120.00103 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00113 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47441 * 90.00088 * 26 24 22 28 28 H 1.48498 * 109.47342 * 210.00419 * 26 24 22 29 29 H 1.48505 * 109.47340 * 330.00428 * 26 24 22 30 30 H 1.09002 * 109.47264 * 299.91779 * 1 2 3 31 31 H 1.09001 * 109.47077 * 59.91894 * 1 2 3 32 32 H 1.09002 * 109.47506 * 179.91892 * 1 2 3 33 33 H 1.09003 * 109.46448 * 298.71134 * 4 2 1 34 34 H 1.09004 * 109.45390 * 58.66641 * 4 2 1 35 35 H 1.09000 * 109.49780 * 181.31890 * 5 4 2 36 36 H 1.09002 * 109.49923 * 301.38440 * 5 4 2 37 37 H 1.08999 * 109.50703 * 185.71116 * 6 5 4 38 38 H 1.08996 * 109.43191 * 65.42032 * 6 5 4 39 39 H 1.08004 * 119.53362 * 179.97438 * 12 11 10 40 40 H 1.07996 * 120.77755 * 179.97438 * 15 13 12 41 41 H 1.08997 * 109.47659 * 46.31703 * 20 18 7 42 42 H 1.09008 * 109.47112 * 166.31599 * 20 18 7 43 43 H 0.97006 * 119.99333 * 0.59858 * 21 20 18 44 44 H 0.97000 * 120.00109 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7232 -1.2483 5 6 3.5708 -0.6951 -1.2659 6 6 4.1055 -1.4217 -0.0331 7 7 3.5045 -0.8292 1.1697 8 6 4.2811 -0.3856 2.1779 9 8 3.7709 0.0653 3.1849 10 6 5.7538 -0.4475 2.0594 11 7 6.3220 -1.4768 1.4409 12 6 7.6262 -1.5712 1.3140 13 6 8.4669 -0.5901 1.8266 14 9 9.8064 -0.6993 1.6887 15 6 7.9168 0.5027 2.4804 16 6 6.5356 0.5734 2.6036 17 9 5.9565 1.6165 3.2373 18 6 2.0413 -0.7238 1.2497 19 1 1.6052 -1.7216 1.2980 20 6 1.6517 0.0705 2.4979 21 7 1.8598 -0.7575 3.6884 22 6 1.5657 -0.2588 4.9293 23 1 1.1800 0.7449 5.0303 24 6 1.7624 -1.0436 6.0572 25 7 2.2320 -2.2669 5.9340 26 14 1.3605 -0.3635 7.7499 27 1 -0.0525 -0.6734 8.0853 28 1 2.2563 -0.9846 8.7584 29 1 1.5583 1.1083 7.7519 30 1 -0.3634 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3634 -1.0277 -0.0015 33 1 1.6967 -1.7574 -1.2353 34 1 1.6582 -0.2246 -2.1389 35 1 3.9334 -1.1899 -2.1670 36 1 3.9159 0.3388 -1.2546 37 1 5.1895 -1.3160 0.0101 38 1 3.8411 -2.4775 -0.0914 39 1 8.0512 -2.4236 0.8048 40 1 8.5483 1.2783 2.8879 41 1 2.2690 0.9663 2.5659 42 1 0.6019 0.3568 2.4334 43 1 2.2059 -1.6591 3.5975 44 1 2.3698 -2.8152 6.7223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271718602.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:51 Heat of formation + Delta-G solvation = -24.085839 kcal Electronic energy + Delta-G solvation = -31160.792195 eV Core-core repulsion = 26751.750453 eV Total energy + Delta-G solvation = -4409.041742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -49.34379 -48.99631 -40.74949 -39.47923 -37.17822 -34.65808 -33.53251 -32.48121 -32.11121 -31.00715 -30.12478 -27.10899 -25.98044 -24.84280 -24.14081 -23.49607 -22.36938 -21.09574 -20.46053 -19.44866 -18.35800 -18.21882 -17.26191 -16.64497 -16.44553 -16.05380 -15.60549 -15.36484 -15.32648 -14.91173 -14.69936 -14.60058 -14.50217 -13.94774 -13.68499 -13.48223 -13.32521 -13.16290 -12.86965 -12.62367 -12.51551 -12.44227 -12.26589 -12.01884 -11.63514 -11.44383 -10.91973 -10.89236 -10.69854 -10.68788 -10.56402 -10.15234 -10.11566 -9.87003 -9.71476 -9.51961 -9.08477 -8.73337 -8.48831 -8.03980 -6.54099 -5.57000 -2.72781 0.29536 0.65176 2.81927 3.16759 3.46673 3.54423 3.58743 3.59613 3.61913 3.86363 4.15714 4.34407 4.43052 4.73458 4.78662 4.88142 4.94262 4.97701 5.13814 5.22596 5.38374 5.45384 5.50040 5.60062 5.65391 5.73624 5.79720 5.85615 5.89662 5.93668 6.00475 6.05845 6.17270 6.20166 6.28476 6.34801 6.45920 6.60033 6.71211 6.93403 7.27172 7.33759 7.86611 7.87317 8.60851 8.76839 9.72134 10.31718 10.66144 11.66497 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008514 B = 0.005367 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3287.775477 B = 5215.661618 C = 7673.773855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.072 0.928 4 C -0.113 4.113 5 C -0.137 4.137 6 C 0.103 3.897 7 N -0.596 5.596 8 C 0.523 3.477 9 O -0.419 6.419 10 C 0.060 3.940 11 N -0.399 5.399 12 C 0.058 3.942 13 C 0.084 3.916 14 F -0.122 7.122 15 C -0.155 4.155 16 C 0.131 3.869 17 F -0.100 7.100 18 C 0.148 3.852 19 H 0.072 0.928 20 C 0.155 3.845 21 N -0.692 5.692 22 C -0.200 4.200 23 H 0.066 0.934 24 C -0.023 4.023 25 N -0.934 5.934 26 Si 0.902 3.098 27 H -0.293 1.293 28 H -0.294 1.294 29 H -0.284 1.284 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.104 0.896 38 H 0.065 0.935 39 H 0.178 0.822 40 H 0.163 0.837 41 H 0.041 0.959 42 H 0.022 0.978 43 H 0.380 0.620 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.754 3.089 -18.183 20.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 H 0.090 0.910 4 C -0.150 4.150 5 C -0.175 4.175 6 C -0.020 4.020 7 N -0.332 5.332 8 C 0.306 3.694 9 O -0.285 6.285 10 C -0.080 4.080 11 N -0.110 5.110 12 C -0.103 4.103 13 C 0.062 3.938 14 F -0.101 7.101 15 C -0.182 4.182 16 C 0.107 3.893 17 F -0.078 7.078 18 C 0.046 3.954 19 H 0.090 0.910 20 C 0.028 3.972 21 N -0.334 5.334 22 C -0.332 4.332 23 H 0.084 0.916 24 C -0.218 4.218 25 N -0.585 5.585 26 Si 0.734 3.266 27 H -0.221 1.221 28 H -0.221 1.221 29 H -0.210 1.210 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.121 0.879 38 H 0.083 0.917 39 H 0.195 0.805 40 H 0.181 0.819 41 H 0.059 0.941 42 H 0.039 0.961 43 H 0.214 0.786 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.832 2.880 -17.716 20.004 hybrid contribution 0.958 0.697 1.369 1.810 sum 9.790 3.577 -16.347 19.387 Atomic orbital electron populations 1.21847 0.94369 1.02168 1.01988 1.21475 0.96073 0.99919 0.94408 0.90959 1.21581 0.95153 1.00857 0.97457 1.21906 0.96336 1.01135 0.98130 1.21950 0.99918 0.96772 0.83395 1.47578 1.05960 1.61803 1.17890 1.17633 0.83626 0.83560 0.84599 1.91342 1.70161 1.39809 1.27142 1.21983 0.96973 0.91140 0.97891 1.67976 1.11092 1.20487 1.11459 1.23103 0.88581 0.98681 0.99962 1.18656 0.78508 0.96337 1.00324 1.91553 1.29010 1.95841 1.93669 1.21607 0.94040 1.00298 1.02236 1.18276 0.90130 0.86450 0.94405 1.91653 1.84190 1.53747 1.78203 1.21558 0.78382 0.99797 0.95705 0.91010 1.21026 0.96538 0.94822 0.84850 1.42291 1.75753 1.14432 1.00928 1.19175 1.32465 0.97457 0.84102 0.91565 1.24632 1.03157 0.96558 0.97425 1.69661 1.52249 1.08492 1.28054 0.86227 0.77356 0.77947 0.85022 1.22099 1.22091 1.20986 0.91529 0.92903 0.92528 0.91767 0.92079 0.91187 0.92068 0.87891 0.91707 0.80453 0.81929 0.94114 0.96078 0.78638 0.93955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.99 37.15 0.33 -1.43 16 2 C -0.10 -1.29 2.34 -90.50 -0.21 -1.51 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 4 C -0.11 -1.20 5.17 -26.69 -0.14 -1.34 16 5 C -0.14 -1.42 6.06 -26.83 -0.16 -1.59 16 6 C 0.10 1.32 5.96 -3.93 -0.02 1.30 16 7 N -0.60 -9.95 2.98 -166.57 -0.50 -10.45 16 8 C 0.52 10.26 7.09 -12.32 -0.09 10.17 16 9 O -0.42 -10.18 9.78 5.32 0.05 -10.13 16 10 C 0.06 0.99 6.09 -82.96 -0.51 0.48 16 11 N -0.40 -5.51 7.10 -9.70 -0.07 -5.58 16 12 C 0.06 0.61 11.17 -17.47 -0.20 0.42 16 13 C 0.08 0.89 7.35 -39.12 -0.29 0.60 16 14 F -0.12 -1.21 17.28 2.25 0.04 -1.17 16 15 C -0.15 -1.79 10.14 -39.18 -0.40 -2.19 16 16 C 0.13 1.99 7.27 -38.84 -0.28 1.71 16 17 F -0.10 -1.75 16.14 2.25 0.04 -1.72 16 18 C 0.15 2.53 2.37 -67.60 -0.16 2.37 16 19 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 20 C 0.15 3.32 4.85 -4.04 -0.02 3.30 16 21 N -0.69 -18.47 3.28 -59.91 -0.20 -18.67 16 22 C -0.20 -5.91 9.53 -15.06 -0.14 -6.05 16 23 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 24 C -0.02 -0.70 5.50 -17.43 -0.10 -0.79 16 25 N -0.93 -29.77 13.06 55.49 0.72 -29.05 16 26 Si 0.90 23.82 29.55 -169.99 -5.02 18.80 16 27 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 28 H -0.29 -7.84 7.11 56.52 0.40 -7.44 16 29 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 30 H 0.07 0.89 6.36 -51.93 -0.33 0.56 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 1.28 4.49 -51.93 -0.23 1.05 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.18 1.26 8.06 -52.48 -0.42 0.83 16 40 H 0.16 1.46 8.06 -52.49 -0.42 1.03 16 41 H 0.04 0.95 6.23 -51.93 -0.32 0.63 16 42 H 0.02 0.45 6.13 -51.92 -0.32 0.13 16 43 H 0.38 10.90 7.51 -40.82 -0.31 10.59 16 44 H 0.25 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 356.61 15.07 5.37 5.37 Total: -1.00 -34.36 356.61 -7.64 -42.00 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.71 Total: 5.13 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -2.38 Total: 5.45 kcal Atomic # 7 Polarization: -63.71 SS G_CDS: -0.04 Total: -63.75 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.05 Total: -10.13 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.08 Total: -2.88 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -5.02 Total: 18.80 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.36 -7.64 -42.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271718602.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.915 kcal (2) G-P(sol) polarization free energy of solvation -34.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds