Wall clock time and date at job start Wed Apr 1 2020 00:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.53034 * 2 1 4 4 C 1.53042 * 109.50104 * 239.91335 * 2 1 3 5 5 C 1.53036 * 109.54179 * 178.68285 * 4 2 1 6 6 C 1.52767 * 109.38200 * 61.24609 * 5 4 2 7 7 N 1.46933 * 109.00596 * 305.58689 * 6 5 4 8 8 C 1.34769 * 120.62843 * 233.58693 * 7 6 5 9 9 O 1.21555 * 120.00035 * 182.23962 * 8 7 6 10 10 C 1.47880 * 120.00555 * 2.22955 * 8 7 6 11 11 N 1.32843 * 119.71929 * 323.52696 * 10 8 7 12 12 C 1.31369 * 121.68935 * 180.02562 * 11 10 8 13 13 C 1.39001 * 120.93354 * 0.02562 * 12 11 10 14 14 F 1.35103 * 120.33107 * 180.02562 * 13 12 11 15 15 C 1.38720 * 119.34172 * 359.97438 * 13 12 11 16 16 C 1.38843 * 118.44860 * 0.25274 * 15 13 12 17 17 F 1.35095 * 120.48664 * 179.72623 * 16 15 13 18 18 C 1.46923 * 118.73765 * 53.30972 * 7 6 5 19 19 H 1.08998 * 109.58870 * 66.42567 * 18 7 6 20 20 C 1.52997 * 109.58570 * 186.85630 * 18 7 6 21 21 N 1.46501 * 109.47315 * 286.31332 * 20 18 7 22 22 C 1.36930 * 120.00344 * 180.59532 * 21 20 18 23 23 H 1.07999 * 119.99821 * 0.02562 * 22 21 20 24 24 C 1.38811 * 120.00043 * 179.97438 * 22 21 20 25 25 N 1.31616 * 120.00103 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00113 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47441 * 90.00088 * 26 24 22 28 28 H 1.48498 * 109.47342 * 210.00419 * 26 24 22 29 29 H 1.48505 * 109.47340 * 330.00428 * 26 24 22 30 30 H 1.09002 * 109.47264 * 299.91779 * 1 2 3 31 31 H 1.09001 * 109.47077 * 59.91894 * 1 2 3 32 32 H 1.09002 * 109.47506 * 179.91892 * 1 2 3 33 33 H 1.09003 * 109.46448 * 298.71134 * 4 2 1 34 34 H 1.09004 * 109.45390 * 58.66641 * 4 2 1 35 35 H 1.09000 * 109.49780 * 181.31890 * 5 4 2 36 36 H 1.09002 * 109.49923 * 301.38440 * 5 4 2 37 37 H 1.08999 * 109.50703 * 185.71116 * 6 5 4 38 38 H 1.08996 * 109.43191 * 65.42032 * 6 5 4 39 39 H 1.08004 * 119.53362 * 179.97438 * 12 11 10 40 40 H 1.07996 * 120.77755 * 179.97438 * 15 13 12 41 41 H 1.08997 * 109.47659 * 46.31703 * 20 18 7 42 42 H 1.09008 * 109.47112 * 166.31599 * 20 18 7 43 43 H 0.97006 * 119.99333 * 0.59858 * 21 20 18 44 44 H 0.97000 * 120.00109 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7232 -1.2483 5 6 3.5708 -0.6951 -1.2659 6 6 4.1055 -1.4217 -0.0331 7 7 3.5045 -0.8292 1.1697 8 6 4.2811 -0.3856 2.1779 9 8 3.7709 0.0653 3.1849 10 6 5.7538 -0.4475 2.0594 11 7 6.3220 -1.4768 1.4409 12 6 7.6262 -1.5712 1.3140 13 6 8.4669 -0.5901 1.8266 14 9 9.8064 -0.6993 1.6887 15 6 7.9168 0.5027 2.4804 16 6 6.5356 0.5734 2.6036 17 9 5.9565 1.6165 3.2373 18 6 2.0413 -0.7238 1.2497 19 1 1.6052 -1.7216 1.2980 20 6 1.6517 0.0705 2.4979 21 7 1.8598 -0.7575 3.6884 22 6 1.5657 -0.2588 4.9293 23 1 1.1800 0.7449 5.0303 24 6 1.7624 -1.0436 6.0572 25 7 2.2320 -2.2669 5.9340 26 14 1.3605 -0.3635 7.7499 27 1 -0.0525 -0.6734 8.0853 28 1 2.2563 -0.9846 8.7584 29 1 1.5583 1.1083 7.7519 30 1 -0.3634 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3634 -1.0277 -0.0015 33 1 1.6967 -1.7574 -1.2353 34 1 1.6582 -0.2246 -2.1389 35 1 3.9334 -1.1899 -2.1670 36 1 3.9159 0.3388 -1.2546 37 1 5.1895 -1.3160 0.0101 38 1 3.8411 -2.4775 -0.0914 39 1 8.0512 -2.4236 0.8048 40 1 8.5483 1.2783 2.8879 41 1 2.2690 0.9663 2.5659 42 1 0.6019 0.3568 2.4334 43 1 2.2059 -1.6591 3.5975 44 1 2.3698 -2.8152 6.7223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271718602.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:51 Heat of formation + Delta-G solvation = -46.603081 kcal Electronic energy + Delta-G solvation = -31161.768616 eV Core-core repulsion = 26751.750453 eV Total energy + Delta-G solvation = -4410.018162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.26195 -50.23042 -42.00885 -40.67001 -38.50694 -36.41620 -34.91137 -33.69277 -33.54184 -32.18791 -31.80289 -28.58233 -27.11071 -26.27918 -25.41609 -24.82179 -23.93200 -22.34718 -21.67063 -20.68071 -19.43599 -19.37338 -19.02743 -18.13002 -17.54011 -17.13514 -16.81725 -16.65934 -16.55268 -16.53347 -16.10500 -15.63883 -15.60903 -15.51243 -15.06814 -14.96281 -14.59059 -14.44063 -14.17922 -13.96084 -13.78279 -13.70494 -13.58260 -13.33216 -12.96056 -12.84066 -12.77042 -12.48227 -12.15081 -11.92190 -11.87966 -11.66549 -11.61832 -11.19739 -11.12092 -10.87269 -10.84183 -10.25274 -9.95229 -9.46912 -8.65958 -7.84163 -5.03280 -0.77655 -0.35335 1.41517 1.44730 1.52849 1.62193 1.89583 2.26797 2.49697 2.60978 2.78123 3.03666 3.36256 3.41463 3.49207 3.73818 3.75723 3.85430 3.97363 4.15560 4.20916 4.30905 4.34404 4.39422 4.43522 4.57168 4.59208 4.71373 4.80920 4.88967 4.91559 4.98425 5.08236 5.12240 5.24633 5.26736 5.28126 5.32509 5.43202 5.51563 5.55116 5.81767 6.27066 6.36825 6.50933 7.32016 7.43458 8.22037 8.45302 9.40878 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008514 B = 0.005367 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3287.775477 B = 5215.661618 C = 7673.773855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.066 0.934 4 C -0.108 4.108 5 C -0.129 4.129 6 C 0.096 3.904 7 N -0.592 5.592 8 C 0.521 3.479 9 O -0.484 6.484 10 C 0.035 3.965 11 N -0.407 5.407 12 C 0.075 3.925 13 C 0.109 3.891 14 F -0.108 7.108 15 C -0.142 4.142 16 C 0.109 3.891 17 F -0.123 7.123 18 C 0.152 3.848 19 H 0.061 0.939 20 C 0.161 3.839 21 N -0.704 5.704 22 C -0.203 4.203 23 H 0.061 0.939 24 C -0.087 4.087 25 N -0.976 5.976 26 Si 0.965 3.035 27 H -0.284 1.284 28 H -0.298 1.298 29 H -0.279 1.279 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.058 0.942 37 H 0.111 0.889 38 H 0.070 0.930 39 H 0.223 0.777 40 H 0.191 0.809 41 H 0.019 0.981 42 H 0.023 0.977 43 H 0.365 0.635 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.900 2.863 -21.286 24.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.084 0.916 4 C -0.145 4.145 5 C -0.167 4.167 6 C -0.025 4.025 7 N -0.327 5.327 8 C 0.305 3.695 9 O -0.355 6.355 10 C -0.103 4.103 11 N -0.118 5.118 12 C -0.087 4.087 13 C 0.087 3.913 14 F -0.086 7.086 15 C -0.169 4.169 16 C 0.086 3.914 17 F -0.101 7.101 18 C 0.049 3.951 19 H 0.079 0.921 20 C 0.035 3.965 21 N -0.344 5.344 22 C -0.336 4.336 23 H 0.079 0.921 24 C -0.277 4.277 25 N -0.629 5.629 26 Si 0.796 3.204 27 H -0.211 1.211 28 H -0.225 1.225 29 H -0.204 1.204 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.076 0.924 37 H 0.128 0.872 38 H 0.088 0.912 39 H 0.239 0.761 40 H 0.208 0.792 41 H 0.037 0.963 42 H 0.041 0.959 43 H 0.196 0.804 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 10.987 2.684 -20.913 23.775 hybrid contribution 0.622 0.778 2.087 2.313 sum 11.610 3.462 -18.825 22.386 Atomic orbital electron populations 1.21826 0.93488 1.02436 1.02319 1.21433 0.96749 0.99282 0.93595 0.91595 1.21579 0.95308 1.01012 0.96625 1.21884 0.96048 1.00948 0.97837 1.22251 1.00397 0.97146 0.82738 1.47816 1.05762 1.60620 1.18509 1.18257 0.85383 0.81672 0.84143 1.91314 1.71779 1.43146 1.29282 1.21553 0.95451 0.92914 1.00383 1.67954 1.12797 1.19462 1.11555 1.23816 0.87222 0.99377 0.98322 1.18620 0.78932 0.95355 0.98390 1.91610 1.28076 1.95643 1.93294 1.21838 0.92458 1.01258 1.01325 1.18552 0.91556 0.86151 0.95150 1.91594 1.84842 1.54740 1.78919 1.21476 0.79074 0.98918 0.95619 0.92067 1.21002 0.95947 0.94188 0.85351 1.42290 1.76430 1.14165 1.01528 1.19428 1.31387 0.97023 0.85717 0.92129 1.25357 1.04396 0.97103 1.00853 1.69827 1.55049 1.09778 1.28261 0.85225 0.77210 0.77335 0.80636 1.21141 1.22501 1.20411 0.93613 0.90106 0.92292 0.91255 0.89403 0.87861 0.92360 0.87170 0.91213 0.76087 0.79174 0.96327 0.95939 0.80350 0.94741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.99 71.98 0.65 -2.67 16 2 C -0.09 -2.31 2.34 -10.71 -0.03 -2.33 16 3 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 4 C -0.11 -1.97 5.17 30.62 0.16 -1.81 16 5 C -0.13 -2.27 6.06 30.53 0.19 -2.09 16 6 C 0.10 2.31 5.96 86.22 0.51 2.82 16 7 N -0.59 -20.19 2.98 -799.17 -2.38 -22.57 16 8 C 0.52 21.43 7.09 86.80 0.62 22.05 16 9 O -0.48 -25.30 9.78 -3.89 -0.04 -25.34 16 10 C 0.03 1.14 6.09 41.88 0.26 1.40 16 11 N -0.41 -10.48 7.10 -184.60 -1.31 -11.79 16 12 C 0.07 1.29 11.17 84.95 0.95 2.24 16 13 C 0.11 1.87 7.35 22.57 0.17 2.04 16 14 F -0.11 -1.61 17.28 44.97 0.78 -0.83 16 15 C -0.14 -2.95 10.14 22.53 0.23 -2.72 16 16 C 0.11 3.32 7.27 22.75 0.17 3.49 16 17 F -0.12 -4.53 16.14 44.97 0.73 -3.81 16 18 C 0.15 5.36 2.37 44.98 0.11 5.47 16 19 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 20 C 0.16 7.39 4.85 86.38 0.42 7.81 16 21 N -0.70 -40.11 3.28 -343.46 -1.13 -41.24 16 22 C -0.20 -12.67 9.53 84.03 0.80 -11.87 16 23 H 0.06 3.74 7.83 -2.91 -0.02 3.71 16 24 C -0.09 -5.50 5.50 84.86 0.47 -5.03 16 25 N -0.98 -65.30 13.06 21.65 0.28 -65.02 16 26 Si 0.97 51.18 29.55 68.60 2.03 53.21 16 27 H -0.28 -14.48 7.11 99.48 0.71 -13.77 16 28 H -0.30 -15.82 7.11 99.48 0.71 -15.11 16 29 H -0.28 -14.29 7.11 99.48 0.71 -13.58 16 30 H 0.04 1.24 6.36 -2.39 -0.02 1.23 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 37 H 0.11 2.51 4.49 -2.39 -0.01 2.50 16 38 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.22 1.86 8.06 -2.91 -0.02 1.83 16 40 H 0.19 2.82 8.06 -2.91 -0.02 2.80 16 41 H 0.02 0.96 6.23 -2.39 -0.01 0.94 16 42 H 0.02 1.02 6.13 -2.38 -0.01 1.01 16 43 H 0.37 22.41 7.51 -92.70 -0.70 21.71 16 44 H 0.24 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -82.16 356.61 4.96 -77.20 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.35 Total: 21.40 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: 5.65 Total: 18.78 kcal Atomic # 7 Polarization: -136.08 SS G_CDS: -4.53 Total: -140.62 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.04 Total: -25.34 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 1.50 Total: -4.64 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 2.03 Total: 53.21 kcal Total: -82.16 4.96 -77.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271718602.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.597 kcal (2) G-P(sol) polarization free energy of solvation -82.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds