Wall clock time and date at job start Wed Apr 1 2020 00:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.52516 * 2 1 4 4 C 1.53034 * 109.50187 * 239.91219 * 2 1 3 5 5 C 1.53043 * 109.53825 * 301.41504 * 4 2 1 6 6 C 1.53189 * 109.31231 * 298.63120 * 5 4 2 7 7 N 1.46923 * 108.77465 * 54.63739 * 6 5 4 8 8 C 1.34786 * 120.63395 * 126.36635 * 7 6 5 9 9 O 1.21548 * 120.00080 * 186.26587 * 8 7 6 10 10 C 1.47878 * 119.99638 * 6.26532 * 8 7 6 11 11 N 1.32839 * 119.72208 * 36.33654 * 10 8 7 12 12 C 1.31372 * 121.68759 * 179.75157 * 11 10 8 13 13 C 1.39000 * 120.93161 * 0.52632 * 12 11 10 14 14 F 1.35102 * 120.32396 * 179.72376 * 13 12 11 15 15 C 1.38715 * 119.34297 * 359.73744 * 13 12 11 16 16 C 1.38834 * 118.45120 * 0.02562 * 15 13 12 17 17 F 1.35095 * 120.48866 * 179.97438 * 16 15 13 18 18 C 1.46924 * 118.73948 * 306.38845 * 7 6 5 19 19 H 1.09004 * 109.70437 * 293.75000 * 18 7 6 20 20 C 1.53007 * 109.59114 * 173.39544 * 18 7 6 21 21 N 1.46494 * 109.46710 * 70.23448 * 20 18 7 22 22 C 1.36939 * 119.99730 * 177.66634 * 21 20 18 23 23 H 1.08002 * 120.00145 * 0.02562 * 22 21 20 24 24 C 1.38809 * 120.00140 * 180.02562 * 22 21 20 25 25 N 1.31623 * 120.00157 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00237 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47112 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47336 * 120.00186 * 26 24 22 29 29 H 1.48499 * 109.47206 * 240.00101 * 26 24 22 30 30 H 1.09004 * 109.46755 * 180.08287 * 1 2 3 31 31 H 1.08994 * 109.47179 * 300.08537 * 1 2 3 32 32 H 1.09003 * 109.46272 * 60.09020 * 1 2 3 33 33 H 1.09002 * 109.46334 * 181.40021 * 4 2 1 34 34 H 1.08999 * 109.46503 * 61.43633 * 4 2 1 35 35 H 1.09003 * 109.49714 * 178.68139 * 5 4 2 36 36 H 1.08997 * 109.49566 * 58.58576 * 5 4 2 37 37 H 1.09004 * 109.58671 * 174.41896 * 6 5 4 38 38 H 1.08996 * 109.59143 * 294.84683 * 6 5 4 39 39 H 1.07999 * 119.53086 * 180.26348 * 12 11 10 40 40 H 1.08000 * 120.77585 * 179.97438 * 15 13 12 41 41 H 1.08994 * 109.46972 * 190.23710 * 20 18 7 42 42 H 1.09000 * 109.46596 * 310.23635 * 20 18 7 43 43 H 0.97000 * 120.00721 * 357.66646 * 21 20 18 44 44 H 0.97001 * 120.00178 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0409 -0.7232 -1.2482 5 6 1.5031 -2.1559 -1.2657 6 6 2.0141 -2.9040 -0.0304 7 7 1.6516 -2.1381 1.1698 8 6 0.9739 -2.7217 2.1782 9 8 0.5805 -2.0524 3.1135 10 6 0.7091 -4.1762 2.1467 11 7 1.6227 -5.0013 1.6475 12 6 1.4298 -6.3001 1.6050 13 6 0.2487 -6.8628 2.0746 14 9 0.0611 -8.1996 2.0198 15 6 -0.7353 -6.0382 2.5997 16 6 -0.5017 -4.6701 2.6363 17 9 -1.4321 -3.8291 3.1386 18 6 2.0413 -0.7237 1.2497 19 1 3.1273 -0.6440 1.2996 20 6 1.4228 -0.0909 2.4980 21 7 2.0792 -0.6264 3.6932 22 6 1.7227 -0.1681 4.9334 23 1 0.9575 0.5878 5.0304 24 6 2.3450 -0.6750 6.0659 25 7 3.2780 -1.5959 5.9477 26 14 1.8593 -0.0494 7.7577 27 1 0.7961 0.9780 7.6191 28 1 1.3524 -1.1796 8.5768 29 1 3.0437 0.5512 8.4222 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3633 0.5151 0.8892 32 1 -0.3632 0.5125 -0.8909 33 1 3.1306 -0.7446 -1.2350 34 1 1.6990 -0.1961 -2.1389 35 1 1.8483 -2.6630 -2.1667 36 1 0.4134 -2.1356 -1.2539 37 1 1.5555 -3.8919 0.0142 38 1 3.0980 -3.0043 -0.0863 39 1 2.1981 -6.9392 1.1954 40 1 -1.6619 -6.4506 2.9707 41 1 1.5583 0.9900 2.4624 42 1 0.3583 -0.3227 2.5333 43 1 2.7662 -1.3055 3.6061 44 1 3.7126 -1.9504 6.7391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271718605.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:56 Heat of formation + Delta-G solvation = -23.348213 kcal Electronic energy + Delta-G solvation = -31466.187927 eV Core-core repulsion = 27057.178171 eV Total energy + Delta-G solvation = -4409.009756 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -49.28546 -48.95664 -40.75496 -39.53654 -37.20834 -34.57865 -33.40436 -32.36360 -32.09056 -30.84455 -30.08419 -27.11506 -26.08980 -24.81082 -24.13394 -23.66934 -22.63923 -21.36840 -20.37311 -18.64188 -18.29379 -18.13854 -17.33918 -16.59029 -16.38287 -15.98994 -15.56035 -15.47511 -15.24755 -15.03844 -14.79771 -14.61168 -14.28683 -13.81030 -13.71930 -13.50534 -13.37114 -13.14521 -12.98939 -12.71154 -12.51281 -12.42278 -12.27914 -12.01630 -11.51881 -11.28548 -10.97381 -10.88577 -10.74037 -10.61875 -10.36673 -10.20158 -10.04751 -9.89316 -9.78256 -9.56236 -9.01444 -8.82663 -8.40670 -8.04169 -6.57974 -5.61684 -2.76335 0.34736 0.72338 2.86947 3.21547 3.50447 3.54078 3.57820 3.60031 3.63478 3.92357 4.24149 4.39705 4.47655 4.71081 4.82392 4.90968 4.95615 4.97807 5.17049 5.28354 5.39996 5.44141 5.53948 5.58700 5.64386 5.75256 5.76663 5.88467 5.91185 5.95111 6.02046 6.05264 6.17496 6.25453 6.31074 6.34415 6.50545 6.55351 6.69811 6.93121 7.30154 7.42466 7.83897 7.89622 8.56231 8.79059 9.67243 10.26501 10.60429 11.61422 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008516 B = 0.005610 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3287.138948 B = 4989.550044 C = 7243.107947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 H 0.080 0.920 4 C -0.112 4.112 5 C -0.139 4.139 6 C 0.116 3.884 7 N -0.595 5.595 8 C 0.526 3.474 9 O -0.423 6.423 10 C 0.062 3.938 11 N -0.399 5.399 12 C 0.061 3.939 13 C 0.081 3.919 14 F -0.123 7.123 15 C -0.155 4.155 16 C 0.127 3.873 17 F -0.102 7.102 18 C 0.148 3.852 19 H 0.071 0.929 20 C 0.153 3.847 21 N -0.693 5.693 22 C -0.200 4.200 23 H 0.068 0.932 24 C -0.023 4.023 25 N -0.932 5.932 26 Si 0.903 3.097 27 H -0.281 1.281 28 H -0.294 1.294 29 H -0.294 1.294 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.177 0.823 40 H 0.162 0.838 41 H 0.016 0.984 42 H 0.053 0.947 43 H 0.380 0.620 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.430 -8.149 -17.751 20.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 H 0.098 0.902 4 C -0.150 4.150 5 C -0.177 4.177 6 C -0.008 4.008 7 N -0.332 5.332 8 C 0.309 3.691 9 O -0.289 6.289 10 C -0.078 4.078 11 N -0.110 5.110 12 C -0.101 4.101 13 C 0.059 3.941 14 F -0.102 7.102 15 C -0.182 4.182 16 C 0.104 3.896 17 F -0.080 7.080 18 C 0.045 3.955 19 H 0.089 0.911 20 C 0.026 3.974 21 N -0.335 5.335 22 C -0.332 4.332 23 H 0.086 0.914 24 C -0.218 4.218 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.207 1.207 28 H -0.222 1.222 29 H -0.222 1.222 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.194 0.806 40 H 0.180 0.820 41 H 0.033 0.967 42 H 0.070 0.930 43 H 0.214 0.786 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.023 -7.223 -17.318 19.424 hybrid contribution -0.870 -0.769 1.403 1.821 sum -5.893 -7.992 -15.915 18.759 Atomic orbital electron populations 1.21853 0.94924 1.01956 1.01408 1.21470 0.96672 0.99387 0.94413 0.90186 1.21529 1.00501 0.95468 0.97483 1.22024 1.01414 0.96378 0.97916 1.21742 1.00393 0.95093 0.83547 1.47460 1.57138 1.10747 1.17817 1.17513 0.83245 0.84407 0.83895 1.91226 1.45339 1.60195 1.32125 1.21899 0.90135 0.96837 0.98970 1.67998 1.28460 1.03095 1.11415 1.23066 0.95573 0.91842 0.99639 1.18653 0.95924 0.78193 1.01371 1.91547 1.95382 1.29175 1.94059 1.21581 1.01914 0.91726 1.02937 1.18287 0.87647 0.87284 0.96403 1.91636 1.62748 1.69892 1.83732 1.21532 0.98861 0.79306 0.95775 0.91103 1.21091 0.97713 0.93992 0.84582 1.42385 1.43516 1.46659 1.00900 1.19256 1.14787 1.15288 0.83899 0.91367 1.24663 0.99828 0.99801 0.97540 1.69676 1.28762 1.31847 1.27865 0.86134 0.77397 0.77768 0.85134 1.20675 1.22194 1.22200 0.92587 0.91947 0.93400 0.91839 0.92082 0.91355 0.91525 0.89414 0.91632 0.80555 0.82045 0.96685 0.92992 0.78639 0.93923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.21 37.16 0.31 -1.55 16 2 C -0.10 -1.28 2.79 -90.50 -0.25 -1.54 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.11 -1.18 5.43 -26.69 -0.14 -1.32 16 5 C -0.14 -1.43 5.74 -26.61 -0.15 -1.59 16 6 C 0.12 1.47 5.81 -3.71 -0.02 1.45 16 7 N -0.59 -9.77 2.41 -166.31 -0.40 -10.17 16 8 C 0.53 10.29 6.82 -12.31 -0.08 10.20 16 9 O -0.42 -10.14 9.91 5.32 0.05 -10.08 16 10 C 0.06 1.04 5.88 -82.96 -0.49 0.55 16 11 N -0.40 -5.77 7.54 -9.70 -0.07 -5.84 16 12 C 0.06 0.68 11.17 -17.47 -0.20 0.49 16 13 C 0.08 0.90 7.35 -39.12 -0.29 0.62 16 14 F -0.12 -1.28 17.28 2.25 0.04 -1.24 16 15 C -0.15 -1.86 10.14 -39.18 -0.40 -2.26 16 16 C 0.13 1.99 7.27 -38.84 -0.28 1.70 16 17 F -0.10 -1.80 16.15 2.25 0.04 -1.76 16 18 C 0.15 2.49 2.62 -67.59 -0.18 2.31 16 19 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 20 C 0.15 3.26 4.03 -4.04 -0.02 3.24 16 21 N -0.69 -18.37 3.28 -59.91 -0.20 -18.56 16 22 C -0.20 -5.88 9.61 -15.06 -0.14 -6.03 16 23 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 24 C -0.02 -0.70 5.50 -17.43 -0.10 -0.80 16 25 N -0.93 -29.46 13.06 55.49 0.72 -28.74 16 26 Si 0.90 23.69 29.55 -169.99 -5.02 18.66 16 27 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 29 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 30 H 0.06 0.76 5.97 -51.93 -0.31 0.45 16 31 H 0.06 0.90 6.59 -51.93 -0.34 0.56 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.72 6.34 -51.93 -0.33 0.39 16 37 H 0.09 1.09 5.04 -51.93 -0.26 0.83 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.18 1.39 8.06 -52.49 -0.42 0.96 16 40 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.02 0.33 8.12 -51.93 -0.42 -0.10 16 42 H 0.05 1.18 5.03 -51.93 -0.26 0.92 16 43 H 0.38 10.81 7.26 -40.82 -0.30 10.52 16 44 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 352.48 15.07 5.31 5.31 Total: -1.00 -33.91 352.48 -7.54 -41.45 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.57 Total: 5.50 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -2.44 Total: 5.48 kcal Atomic # 7 Polarization: -63.37 SS G_CDS: 0.05 Total: -63.32 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.05 Total: -10.08 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.08 Total: -3.00 kcal Atomic # 14 Polarization: 23.69 SS G_CDS: -5.02 Total: 18.66 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.91 -7.54 -41.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271718605.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.104 kcal (2) G-P(sol) polarization free energy of solvation -33.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds