Wall clock time and date at job start Wed Apr 1 2020 00:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.52516 * 2 1 4 4 C 1.53034 * 109.50187 * 239.91219 * 2 1 3 5 5 C 1.53043 * 109.53825 * 301.41504 * 4 2 1 6 6 C 1.53189 * 109.31231 * 298.63120 * 5 4 2 7 7 N 1.46923 * 108.77465 * 54.63739 * 6 5 4 8 8 C 1.34786 * 120.63395 * 126.36635 * 7 6 5 9 9 O 1.21548 * 120.00080 * 186.26587 * 8 7 6 10 10 C 1.47878 * 119.99638 * 6.26532 * 8 7 6 11 11 N 1.32839 * 119.72208 * 36.33654 * 10 8 7 12 12 C 1.31372 * 121.68759 * 179.75157 * 11 10 8 13 13 C 1.39000 * 120.93161 * 0.52632 * 12 11 10 14 14 F 1.35102 * 120.32396 * 179.72376 * 13 12 11 15 15 C 1.38715 * 119.34297 * 359.73744 * 13 12 11 16 16 C 1.38834 * 118.45120 * 0.02562 * 15 13 12 17 17 F 1.35095 * 120.48866 * 179.97438 * 16 15 13 18 18 C 1.46924 * 118.73948 * 306.38845 * 7 6 5 19 19 H 1.09004 * 109.70437 * 293.75000 * 18 7 6 20 20 C 1.53007 * 109.59114 * 173.39544 * 18 7 6 21 21 N 1.46494 * 109.46710 * 70.23448 * 20 18 7 22 22 C 1.36939 * 119.99730 * 177.66634 * 21 20 18 23 23 H 1.08002 * 120.00145 * 0.02562 * 22 21 20 24 24 C 1.38809 * 120.00140 * 180.02562 * 22 21 20 25 25 N 1.31623 * 120.00157 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00237 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47112 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47336 * 120.00186 * 26 24 22 29 29 H 1.48499 * 109.47206 * 240.00101 * 26 24 22 30 30 H 1.09004 * 109.46755 * 180.08287 * 1 2 3 31 31 H 1.08994 * 109.47179 * 300.08537 * 1 2 3 32 32 H 1.09003 * 109.46272 * 60.09020 * 1 2 3 33 33 H 1.09002 * 109.46334 * 181.40021 * 4 2 1 34 34 H 1.08999 * 109.46503 * 61.43633 * 4 2 1 35 35 H 1.09003 * 109.49714 * 178.68139 * 5 4 2 36 36 H 1.08997 * 109.49566 * 58.58576 * 5 4 2 37 37 H 1.09004 * 109.58671 * 174.41896 * 6 5 4 38 38 H 1.08996 * 109.59143 * 294.84683 * 6 5 4 39 39 H 1.07999 * 119.53086 * 180.26348 * 12 11 10 40 40 H 1.08000 * 120.77585 * 179.97438 * 15 13 12 41 41 H 1.08994 * 109.46972 * 190.23710 * 20 18 7 42 42 H 1.09000 * 109.46596 * 310.23635 * 20 18 7 43 43 H 0.97000 * 120.00721 * 357.66646 * 21 20 18 44 44 H 0.97001 * 120.00178 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0409 -0.7232 -1.2482 5 6 1.5031 -2.1559 -1.2657 6 6 2.0141 -2.9040 -0.0304 7 7 1.6516 -2.1381 1.1698 8 6 0.9739 -2.7217 2.1782 9 8 0.5805 -2.0524 3.1135 10 6 0.7091 -4.1762 2.1467 11 7 1.6227 -5.0013 1.6475 12 6 1.4298 -6.3001 1.6050 13 6 0.2487 -6.8628 2.0746 14 9 0.0611 -8.1996 2.0198 15 6 -0.7353 -6.0382 2.5997 16 6 -0.5017 -4.6701 2.6363 17 9 -1.4321 -3.8291 3.1386 18 6 2.0413 -0.7237 1.2497 19 1 3.1273 -0.6440 1.2996 20 6 1.4228 -0.0909 2.4980 21 7 2.0792 -0.6264 3.6932 22 6 1.7227 -0.1681 4.9334 23 1 0.9575 0.5878 5.0304 24 6 2.3450 -0.6750 6.0659 25 7 3.2780 -1.5959 5.9477 26 14 1.8593 -0.0494 7.7577 27 1 0.7961 0.9780 7.6191 28 1 1.3524 -1.1796 8.5768 29 1 3.0437 0.5512 8.4222 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3633 0.5151 0.8892 32 1 -0.3632 0.5125 -0.8909 33 1 3.1306 -0.7446 -1.2350 34 1 1.6990 -0.1961 -2.1389 35 1 1.8483 -2.6630 -2.1667 36 1 0.4134 -2.1356 -1.2539 37 1 1.5555 -3.8919 0.0142 38 1 3.0980 -3.0043 -0.0863 39 1 2.1981 -6.9392 1.1954 40 1 -1.6619 -6.4506 2.9707 41 1 1.5583 0.9900 2.4624 42 1 0.3583 -0.3227 2.5333 43 1 2.7662 -1.3055 3.6061 44 1 3.7126 -1.9504 6.7391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271718605.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:55 Heat of formation + Delta-G solvation = -45.296611 kcal Electronic energy + Delta-G solvation = -31467.139681 eV Core-core repulsion = 27057.178171 eV Total energy + Delta-G solvation = -4409.961510 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.25355 -50.22485 -42.04208 -40.72276 -38.53894 -36.37585 -34.72738 -33.70455 -33.47430 -32.00167 -31.77333 -28.53581 -27.27094 -26.27567 -25.43133 -24.86281 -24.21568 -22.73280 -21.63568 -19.84357 -19.42568 -19.38674 -18.96156 -18.09432 -17.51070 -17.10145 -16.84289 -16.78950 -16.55594 -16.45796 -16.06949 -15.78649 -15.66652 -15.24065 -15.03369 -14.89631 -14.88425 -14.42068 -14.23465 -14.03471 -13.85528 -13.74356 -13.56079 -13.31892 -12.94585 -12.86049 -12.62426 -12.38305 -12.09060 -12.01734 -11.85332 -11.63219 -11.37272 -11.26829 -11.12360 -10.93932 -10.88430 -10.20939 -9.94609 -9.43932 -8.65808 -7.85452 -5.04872 -0.75943 -0.33301 1.41348 1.43570 1.53183 1.63936 1.93531 2.29043 2.51008 2.60134 2.79641 3.08528 3.37163 3.42708 3.48577 3.75236 3.79444 3.87671 3.95233 4.16237 4.22553 4.30229 4.34619 4.39609 4.47300 4.57177 4.60194 4.68607 4.82539 4.86174 4.94605 5.00116 5.04805 5.13070 5.25159 5.27005 5.31350 5.33004 5.39497 5.52522 5.57910 5.84579 6.30683 6.35878 6.53672 7.34273 7.42416 8.20782 8.43419 9.39368 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008516 B = 0.005610 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3287.138948 B = 4989.550044 C = 7243.107947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.093 4.093 3 H 0.089 0.911 4 C -0.107 4.107 5 C -0.132 4.132 6 C 0.109 3.891 7 N -0.588 5.588 8 C 0.527 3.473 9 O -0.485 6.485 10 C 0.036 3.964 11 N -0.408 5.408 12 C 0.074 3.926 13 C 0.107 3.893 14 F -0.109 7.109 15 C -0.143 4.143 16 C 0.107 3.893 17 F -0.122 7.122 18 C 0.151 3.849 19 H 0.063 0.937 20 C 0.160 3.840 21 N -0.707 5.707 22 C -0.204 4.204 23 H 0.062 0.938 24 C -0.086 4.086 25 N -0.974 5.974 26 Si 0.965 3.035 27 H -0.271 1.271 28 H -0.300 1.300 29 H -0.291 1.291 30 H 0.045 0.955 31 H 0.036 0.964 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.220 0.780 40 H 0.191 0.809 41 H 0.011 0.989 42 H 0.036 0.964 43 H 0.365 0.635 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.711 -10.259 -20.795 23.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.113 4.113 3 H 0.107 0.893 4 C -0.144 4.144 5 C -0.170 4.170 6 C -0.012 4.012 7 N -0.323 5.323 8 C 0.311 3.689 9 O -0.356 6.356 10 C -0.102 4.102 11 N -0.118 5.118 12 C -0.088 4.088 13 C 0.085 3.915 14 F -0.087 7.087 15 C -0.170 4.170 16 C 0.084 3.916 17 F -0.100 7.100 18 C 0.048 3.952 19 H 0.081 0.919 20 C 0.034 3.966 21 N -0.348 5.348 22 C -0.336 4.336 23 H 0.080 0.920 24 C -0.277 4.277 25 N -0.627 5.627 26 Si 0.796 3.204 27 H -0.196 1.196 28 H -0.228 1.228 29 H -0.218 1.218 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.118 0.882 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.236 0.764 40 H 0.208 0.792 41 H 0.029 0.971 42 H 0.053 0.947 43 H 0.197 0.803 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.334 -9.343 -20.459 23.115 hybrid contribution -0.896 -0.453 2.087 2.316 sum -6.230 -9.795 -18.371 21.732 Atomic orbital electron populations 1.21793 0.94929 1.01306 1.01536 1.21467 0.96538 0.99727 0.93582 0.89270 1.21525 1.00886 0.95342 0.96650 1.22002 1.01164 0.96227 0.97562 1.22035 1.00909 0.95362 0.82924 1.47658 1.55559 1.10804 1.18319 1.18110 0.81684 0.85697 0.83375 1.91209 1.48478 1.61747 1.34135 1.21591 0.91445 0.95916 1.01284 1.67989 1.27833 1.04343 1.11679 1.23766 0.96344 0.90892 0.97812 1.18626 0.95202 0.78492 0.99172 1.91604 1.95241 1.28175 1.93663 1.21832 1.03280 0.90036 1.01825 1.18564 0.87326 0.88520 0.97149 1.91585 1.63354 1.70826 1.84262 1.21461 0.98048 0.80026 0.95693 0.91933 1.21056 0.96752 0.93723 0.85080 1.42361 1.44018 1.46948 1.01451 1.19480 1.13952 1.14683 0.85533 0.92025 1.25365 1.00647 1.00827 1.00836 1.69834 1.30787 1.34145 1.27976 0.85156 0.77231 0.77103 0.80933 1.19556 1.22794 1.21827 0.93610 0.94472 0.90562 0.91184 0.89434 0.88153 0.91864 0.88925 0.91035 0.76352 0.79183 0.97092 0.94675 0.80339 0.94742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 8.21 71.98 0.59 -2.89 16 2 C -0.09 -2.30 2.79 -10.71 -0.03 -2.33 16 3 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 4 C -0.11 -1.88 5.43 30.62 0.17 -1.71 16 5 C -0.13 -2.28 5.74 30.67 0.18 -2.10 16 6 C 0.11 2.59 5.81 86.36 0.50 3.09 16 7 N -0.59 -19.60 2.41 -798.34 -1.92 -21.52 16 8 C 0.53 21.48 6.82 86.79 0.59 22.07 16 9 O -0.48 -24.87 9.91 -3.87 -0.04 -24.90 16 10 C 0.04 1.20 5.88 41.88 0.25 1.45 16 11 N -0.41 -11.09 7.54 -184.61 -1.39 -12.48 16 12 C 0.07 1.40 11.17 84.94 0.95 2.35 16 13 C 0.11 1.98 7.35 22.57 0.17 2.14 16 14 F -0.11 -1.75 17.28 44.97 0.78 -0.97 16 15 C -0.14 -3.10 10.14 22.53 0.23 -2.87 16 16 C 0.11 3.34 7.27 22.75 0.17 3.51 16 17 F -0.12 -4.49 16.15 44.97 0.73 -3.76 16 18 C 0.15 5.20 2.62 44.98 0.12 5.32 16 19 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 20 C 0.16 7.23 4.03 86.38 0.35 7.58 16 21 N -0.71 -39.92 3.28 -343.46 -1.13 -41.05 16 22 C -0.20 -12.64 9.61 84.03 0.81 -11.84 16 23 H 0.06 3.78 7.83 -2.91 -0.02 3.76 16 24 C -0.09 -5.44 5.50 84.86 0.47 -4.97 16 25 N -0.97 -64.71 13.06 21.65 0.28 -64.42 16 26 Si 0.96 50.96 29.55 68.60 2.03 52.98 16 27 H -0.27 -13.59 7.11 99.48 0.71 -12.88 16 28 H -0.30 -15.93 7.11 99.48 0.71 -15.22 16 29 H -0.29 -15.01 7.11 99.48 0.71 -14.31 16 30 H 0.04 1.23 5.97 -2.38 -0.01 1.22 16 31 H 0.04 1.11 6.59 -2.39 -0.02 1.09 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 1.18 6.34 -2.39 -0.02 1.16 16 37 H 0.09 2.12 5.04 -2.38 -0.01 2.11 16 38 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.22 2.25 8.06 -2.91 -0.02 2.22 16 40 H 0.19 2.97 8.06 -2.91 -0.02 2.95 16 41 H 0.01 0.51 8.12 -2.39 -0.02 0.49 16 42 H 0.04 1.73 5.03 -2.39 -0.01 1.72 16 43 H 0.37 22.17 7.26 -92.71 -0.67 21.50 16 44 H 0.24 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -80.95 352.48 5.21 -75.74 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.38 Total: 21.60 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: 5.49 Total: 18.78 kcal Atomic # 7 Polarization: -135.32 SS G_CDS: -4.16 Total: -139.48 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.04 Total: -24.90 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 1.50 Total: -4.73 kcal Atomic # 14 Polarization: 50.96 SS G_CDS: 2.03 Total: 52.98 kcal Total: -80.95 5.21 -75.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271718605.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.447 kcal (2) G-P(sol) polarization free energy of solvation -80.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds