Wall clock time and date at job start Wed Apr 1 2020 00:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.99583 * 2 1 4 4 C 1.54315 * 109.98486 * 238.97505 * 2 1 3 5 5 H 1.09003 * 110.92556 * 144.62682 * 4 2 1 6 6 N 1.46897 * 110.74288 * 21.37603 * 4 2 1 7 7 C 1.46900 * 110.99906 * 160.10818 * 6 4 2 8 8 C 1.50704 * 109.47158 * 179.97438 * 7 6 4 9 9 O 1.21290 * 119.99894 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00227 * 179.97438 * 8 7 6 11 11 C 1.37092 * 120.00367 * 180.02562 * 10 8 7 12 12 H 1.08000 * 120.00092 * 359.97438 * 11 10 8 13 13 C 1.38950 * 120.00494 * 180.02562 * 11 10 8 14 14 N 1.31417 * 119.99737 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00476 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47323 * 59.99812 * 15 13 11 17 17 H 1.48502 * 109.47717 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47009 * 300.00169 * 15 13 11 19 19 C 1.55157 * 102.86188 * 263.04244 * 4 2 1 20 20 C 1.54905 * 101.58386 * 324.30444 * 19 4 2 21 21 N 1.47015 * 109.88514 * 121.09509 * 2 1 3 22 22 C 1.34778 * 125.65081 * 300.51412 * 21 2 1 23 23 O 1.21736 * 119.99751 * 187.03607 * 22 21 2 24 24 C 1.46371 * 119.99670 * 7.03298 * 22 21 2 25 25 C 1.33976 * 119.23487 * 340.11359 * 24 22 21 26 26 O 1.35007 * 121.68821 * 180.37165 * 25 24 22 27 27 C 1.43237 * 116.80165 * 342.85096 * 26 25 24 28 28 C 1.53552 * 108.09857 * 45.39088 * 27 26 25 29 29 O 1.36222 * 119.22827 * 160.08739 * 24 22 21 30 30 H 1.09001 * 109.46669 * 275.95847 * 1 2 3 31 31 H 1.08997 * 109.47343 * 35.95994 * 1 2 3 32 32 H 1.09000 * 109.47230 * 155.96642 * 1 2 3 33 33 H 1.00905 * 111.00045 * 284.05684 * 6 4 2 34 34 H 1.09000 * 109.47291 * 299.99962 * 7 6 4 35 35 H 1.09007 * 109.47353 * 60.00005 * 7 6 4 36 36 H 0.97011 * 120.00209 * 0.02562 * 10 8 7 37 37 H 0.96999 * 119.99620 * 180.02562 * 14 13 11 38 38 H 1.08999 * 111.00182 * 206.23165 * 19 4 2 39 39 H 1.09003 * 111.03647 * 82.39318 * 19 4 2 40 40 H 1.09006 * 110.36702 * 278.17382 * 20 19 4 41 41 H 1.08998 * 110.46208 * 155.89389 * 20 19 4 42 42 H 1.07992 * 119.15628 * 0.33895 * 25 24 22 43 43 H 1.09000 * 109.68175 * 285.76992 * 27 26 25 44 44 H 1.09006 * 109.78986 * 165.07550 * 27 26 25 45 45 H 1.08996 * 109.75528 * 182.27839 * 28 27 26 46 46 H 1.09008 * 109.75348 * 61.58717 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 6 2.0574 -0.7475 -1.2428 5 1 2.9706 -0.2847 -1.6169 6 7 1.0330 -0.7957 -2.2945 7 6 1.6376 -1.0626 -3.6064 8 6 0.5585 -1.1054 -4.6576 9 8 -0.6002 -0.9303 -4.3446 10 7 0.8810 -1.3372 -5.9454 11 6 -0.1006 -1.3757 -6.9017 12 1 -1.1324 -1.2206 -6.6230 13 6 0.2319 -1.6152 -8.2294 14 7 1.4873 -1.8044 -8.5685 15 14 -1.1057 -1.6683 -9.5323 16 1 -1.8127 -0.3628 -9.5694 17 1 -0.4946 -1.9387 -10.8585 18 1 -2.0733 -2.7460 -9.2047 19 6 2.3476 -2.1692 -0.6934 20 6 2.8524 -1.8530 0.7366 21 7 2.0300 -0.7140 1.1838 22 6 1.7743 -0.3853 2.4657 23 8 2.3438 -0.9696 3.3691 24 6 0.8118 0.6743 2.7713 25 6 0.4979 1.5667 1.8227 26 8 -0.3777 2.5682 2.0530 27 6 -1.2323 2.4293 3.1941 28 6 -0.3739 1.9639 4.3791 29 8 0.2558 0.7297 4.0137 30 1 -0.3633 0.1067 1.0221 31 1 -0.3634 0.8318 -0.6034 32 1 -0.3634 -0.9386 -0.4185 33 1 0.3237 -1.4798 -2.0774 34 1 2.3482 -0.2717 -3.8467 35 1 2.1562 -2.0211 -3.5794 36 1 1.8078 -1.4769 -6.1958 37 1 1.7194 -1.9712 -9.4955 38 1 3.1213 -2.6643 -1.2802 39 1 1.4386 -2.7700 -0.6629 40 1 3.9060 -1.5744 0.7141 41 1 2.7014 -2.7105 1.3923 42 1 0.9574 1.4831 0.8490 43 1 -2.0050 1.6891 2.9861 44 1 -1.6941 3.3885 3.4282 45 1 -1.0057 1.8103 5.2539 46 1 0.3858 2.7136 4.6006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283842340.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:25 Heat of formation + Delta-G solvation = -94.663021 kcal Electronic energy + Delta-G solvation = -30122.882479 eV Core-core repulsion = 25821.867797 eV Total energy + Delta-G solvation = -4301.014682 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.61549 -41.11043 -40.07213 -39.15209 -37.89074 -36.22604 -35.62343 -34.38675 -33.22153 -31.81651 -31.56336 -29.44203 -28.31712 -26.78197 -26.14583 -25.44765 -24.25941 -21.97935 -21.40319 -21.13841 -20.66651 -19.87938 -19.35467 -18.38340 -18.13128 -17.57537 -17.22711 -17.03417 -16.63979 -16.31893 -16.24742 -15.88538 -15.72156 -15.61273 -15.25405 -15.15734 -14.85362 -14.78309 -14.24055 -14.05776 -13.82125 -13.67255 -13.45548 -13.25976 -13.07711 -13.06590 -12.91614 -12.62912 -12.51623 -12.39265 -12.11271 -12.05731 -11.86177 -11.77408 -11.60838 -11.45663 -11.07793 -10.28641 -9.96617 -9.90145 -9.27762 -9.06059 -8.43136 -5.90923 0.23632 1.40477 1.41978 1.44302 1.54279 1.98164 2.12194 2.15585 2.31305 2.52586 2.89995 3.25140 3.37343 3.38724 3.43311 3.60782 3.71480 3.87657 3.95506 3.96631 4.09674 4.17683 4.23426 4.28322 4.40889 4.42483 4.57031 4.59506 4.61362 4.64174 4.69897 4.75062 4.85179 4.89920 5.00660 5.05838 5.22534 5.36222 5.44730 5.75278 5.91093 6.12476 6.19446 6.32508 6.39563 6.65002 6.96250 7.17513 7.62724 8.18051 8.73858 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020333 B = 0.002273 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.763062 B =12317.847690 C =13399.733955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.121 3.879 3 H 0.111 0.889 4 C 0.091 3.909 5 H 0.124 0.876 6 N -0.663 5.663 7 C 0.065 3.935 8 C 0.438 3.562 9 O -0.623 6.623 10 N -0.575 5.575 11 C -0.331 4.331 12 H 0.078 0.922 13 C -0.013 4.013 14 N -0.920 5.920 15 Si 0.989 3.011 16 H -0.273 1.273 17 H -0.273 1.273 18 H -0.273 1.273 19 C -0.158 4.158 20 C 0.111 3.889 21 N -0.605 5.605 22 C 0.591 3.409 23 O -0.577 6.577 24 C -0.127 4.127 25 C 0.028 3.972 26 O -0.305 6.305 27 C 0.007 3.993 28 C 0.013 3.987 29 O -0.321 6.321 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.348 0.652 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.397 0.603 37 H 0.277 0.723 38 H 0.110 0.890 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.222 0.778 43 H 0.084 0.916 44 H 0.156 0.844 45 H 0.147 0.853 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.404 6.785 20.239 21.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.018 3.982 3 H 0.128 0.872 4 C -0.020 4.020 5 H 0.142 0.858 6 N -0.295 5.295 7 C -0.067 4.067 8 C 0.226 3.774 9 O -0.509 6.509 10 N -0.212 5.212 11 C -0.461 4.461 12 H 0.096 0.904 13 C -0.213 4.213 14 N -0.561 5.561 15 Si 0.813 3.187 16 H -0.198 1.198 17 H -0.197 1.197 18 H -0.198 1.198 19 C -0.198 4.198 20 C -0.010 4.010 21 N -0.339 5.339 22 C 0.383 3.617 23 O -0.459 6.459 24 C -0.175 4.175 25 C -0.038 4.038 26 O -0.217 6.217 27 C -0.068 4.068 28 C -0.062 4.062 29 O -0.236 6.236 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.169 0.831 34 H 0.130 0.870 35 H 0.090 0.910 36 H 0.231 0.769 37 H 0.086 0.914 38 H 0.128 0.872 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.237 0.763 43 H 0.102 0.898 44 H 0.173 0.827 45 H 0.165 0.835 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.937 7.294 20.740 22.071 hybrid contribution -0.139 -1.179 -0.519 1.296 sum 1.798 6.115 20.221 21.202 Atomic orbital electron populations 1.22581 0.93982 1.04216 1.01889 1.22031 0.95320 0.96445 0.84359 0.87196 1.22641 0.95128 0.94704 0.89555 0.85825 1.60075 1.13086 1.56449 0.99908 1.21576 0.94496 1.02746 0.87861 1.20954 0.90631 0.81902 0.83923 1.90505 1.22709 1.55977 1.81747 1.41929 1.10028 1.63227 1.06054 1.19592 0.90620 1.47759 0.88101 0.90384 1.25974 0.99254 0.96443 0.99586 1.69658 1.17706 1.48780 1.19976 0.85048 0.77800 0.78837 0.77036 1.19780 1.19716 1.19832 1.23576 1.03201 0.98035 0.94953 1.22305 0.95454 0.88109 0.95171 1.48323 1.50808 1.31013 1.03801 1.16963 0.80953 0.82280 0.81518 1.90797 1.53045 1.55934 1.46099 1.19993 1.05898 1.04275 0.87292 1.25215 0.91249 0.87920 0.99459 1.86164 1.46987 1.41401 1.47129 1.24074 0.91720 1.06713 0.84286 1.23964 0.97585 0.85327 0.99353 1.86337 1.71082 1.37179 1.28986 0.91948 0.89755 0.92288 0.83095 0.87019 0.90963 0.76917 0.91409 0.87172 0.90934 0.89270 0.91230 0.76298 0.89799 0.82660 0.83543 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.42 6.92 71.98 0.50 -2.92 16 2 C 0.12 2.13 2.73 45.34 0.12 2.25 16 3 H 0.11 1.55 6.26 -2.38 -0.01 1.54 16 4 C 0.09 1.52 3.07 46.10 0.14 1.66 16 5 H 0.12 1.61 7.89 -2.39 -0.02 1.59 16 6 N -0.66 -16.21 4.93 -489.45 -2.41 -18.62 16 7 C 0.07 1.82 6.02 85.56 0.52 2.33 16 8 C 0.44 18.93 7.82 87.66 0.69 19.62 16 9 O -0.62 -32.03 15.78 -3.06 -0.05 -32.07 16 10 N -0.57 -27.66 5.29 -306.99 -1.62 -29.28 16 11 C -0.33 -18.08 9.68 84.04 0.81 -17.27 16 12 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 13 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 14 N -0.92 -48.18 13.05 21.66 0.28 -47.90 16 15 Si 0.99 41.87 29.55 68.60 2.03 43.90 16 16 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 17 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 18 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 19 C -0.16 -2.42 6.63 31.98 0.21 -2.21 16 20 C 0.11 2.00 6.89 86.85 0.60 2.59 16 21 N -0.60 -12.89 3.08 -793.74 -2.45 -15.33 16 22 C 0.59 16.63 7.57 86.36 0.65 17.28 16 23 O -0.58 -20.88 17.29 8.65 0.15 -20.73 16 24 C -0.13 -3.15 5.65 23.42 0.13 -3.02 16 25 C 0.03 0.54 7.24 66.85 0.48 1.03 16 26 O -0.31 -5.50 10.47 -69.29 -0.73 -6.23 16 27 C 0.01 0.08 7.30 72.17 0.53 0.61 16 28 C 0.01 0.18 7.31 72.17 0.53 0.71 16 29 O -0.32 -8.16 10.34 -72.49 -0.75 -8.91 16 30 H 0.06 1.33 4.34 -2.39 -0.01 1.32 16 31 H 0.08 1.76 8.11 -2.39 -0.02 1.74 16 32 H 0.06 1.33 6.43 -2.39 -0.02 1.32 16 33 H 0.35 9.50 6.54 -89.69 -0.59 8.92 16 34 H 0.11 2.67 8.08 -2.39 -0.02 2.65 16 35 H 0.07 1.70 8.13 -2.38 -0.02 1.68 16 36 H 0.40 18.03 7.90 -92.70 -0.73 17.30 16 37 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 38 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.07 1.28 7.82 -2.39 -0.02 1.26 16 40 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.07 1.42 8.11 -2.39 -0.02 1.40 16 42 H 0.22 3.73 2.51 -3.20 -0.01 3.72 16 43 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.16 0.77 8.14 -2.38 -0.02 0.75 16 45 H 0.15 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 Total: -1.00 -76.59 367.86 0.56 -76.02 By element: Atomic # 1 Polarization: 36.97 SS G_CDS: -0.27 Total: 36.71 kcal Atomic # 6 Polarization: 16.08 SS G_CDS: 6.38 Total: 22.46 kcal Atomic # 7 Polarization: -104.94 SS G_CDS: -6.20 Total: -111.14 kcal Atomic # 8 Polarization: -66.57 SS G_CDS: -1.37 Total: -67.95 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -76.59 0.56 -76.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283842340.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.639 kcal (2) G-P(sol) polarization free energy of solvation -76.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds