Wall clock time and date at job start Wed Apr 1 2020 00:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.00017 * 2 1 4 4 C 1.54332 * 109.88554 * 238.91232 * 2 1 3 5 5 H 1.09000 * 110.71844 * 336.92686 * 4 2 1 6 6 N 1.46893 * 110.72064 * 100.02203 * 4 2 1 7 7 C 1.46904 * 110.99988 * 205.00108 * 6 4 2 8 8 C 1.50702 * 109.47319 * 180.02562 * 7 6 4 9 9 O 1.21285 * 119.99764 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99924 * 179.97438 * 8 7 6 11 11 C 1.37099 * 120.00006 * 179.97438 * 10 8 7 12 12 H 1.08001 * 119.99850 * 0.02562 * 11 10 8 13 13 C 1.38944 * 120.00173 * 180.02562 * 11 10 8 14 14 N 1.31420 * 119.99840 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00323 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47058 * 270.00037 * 15 13 11 17 17 H 1.48501 * 109.47089 * 29.99858 * 15 13 11 18 18 H 1.48503 * 109.47645 * 149.99843 * 15 13 11 19 19 C 1.55151 * 102.94168 * 218.38962 * 4 2 1 20 20 C 1.54913 * 101.58376 * 35.49644 * 19 4 2 21 21 N 1.47016 * 109.88531 * 121.10129 * 2 1 3 22 22 C 1.34779 * 125.64971 * 298.39410 * 21 2 1 23 23 O 1.21740 * 119.99594 * 354.52979 * 22 21 2 24 24 C 1.46369 * 120.00314 * 174.53089 * 22 21 2 25 25 C 1.33976 * 119.23364 * 184.88948 * 24 22 21 26 26 O 1.35000 * 121.68969 * 180.36824 * 25 24 22 27 27 C 1.43247 * 116.76645 * 342.80044 * 26 25 24 28 28 C 1.53548 * 108.09009 * 45.47979 * 27 26 25 29 29 O 1.36214 * 119.23210 * 4.61529 * 24 22 21 30 30 H 1.09004 * 109.46604 * 181.08950 * 1 2 3 31 31 H 1.08990 * 109.47119 * 301.08726 * 1 2 3 32 32 H 1.09001 * 109.47333 * 61.09506 * 1 2 3 33 33 H 1.00900 * 111.00612 * 328.95348 * 6 4 2 34 34 H 1.09006 * 109.47033 * 59.99917 * 7 6 4 35 35 H 1.09008 * 109.47201 * 300.00491 * 7 6 4 36 36 H 0.97000 * 120.00068 * 0.02562 * 10 8 7 37 37 H 0.97000 * 119.99570 * 179.97438 * 14 13 11 38 38 H 1.09006 * 111.00670 * 153.57530 * 19 4 2 39 39 H 1.09001 * 111.00455 * 277.42381 * 19 4 2 40 40 H 1.09002 * 110.36766 * 204.15147 * 20 19 4 41 41 H 1.09002 * 110.45527 * 81.87840 * 20 19 4 42 42 H 1.08003 * 119.15346 * 0.34363 * 25 24 22 43 43 H 1.08995 * 109.74400 * 165.13810 * 27 26 25 44 44 H 1.09001 * 109.73465 * 285.79070 * 27 26 25 45 45 H 1.09006 * 109.74723 * 61.47800 * 28 27 26 46 46 H 1.08999 * 109.75871 * 182.22038 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7494 -1.2429 5 1 1.3041 -1.4435 -1.6203 6 7 2.4565 0.1989 -2.2903 7 6 2.3872 -0.4239 -3.6190 8 6 2.8059 0.5766 -4.6653 9 8 3.1307 1.6979 -4.3365 10 7 2.8206 0.2249 -5.9663 11 6 3.2010 1.1353 -6.9182 12 1 3.4894 2.1341 -6.6255 13 6 3.2156 0.7730 -8.2595 14 7 2.8642 -0.4423 -8.6157 15 14 3.7346 2.0130 -9.5565 16 1 2.5433 2.7635 -10.0285 17 1 4.7163 2.9607 -8.9704 18 1 4.3567 1.3009 -10.7015 19 6 3.2876 -1.5141 -0.6926 20 6 2.8146 -1.8794 0.7366 21 7 2.0300 -0.7141 1.1838 22 6 1.8075 -0.3623 2.4656 23 8 1.2265 0.6770 2.7194 24 6 2.2643 -1.2296 3.5526 25 6 1.9493 -0.9158 4.8164 26 8 2.3507 -1.6763 5.8571 27 6 2.7880 -3.0062 5.5534 28 6 3.7236 -2.9346 4.3380 29 8 2.9950 -2.3400 3.2552 30 1 -0.3633 -1.0276 0.0195 31 1 -0.3633 0.5306 0.8800 32 1 -0.3634 0.4967 -0.8996 33 1 1.8956 1.0368 -2.2541 34 1 1.3654 -0.7491 -3.8150 35 1 3.0550 -1.2848 -3.6521 36 1 2.5612 -0.6720 -6.2292 37 1 2.8740 -0.6951 -9.5521 38 1 3.4853 -2.4109 -1.2799 39 1 4.1654 -0.8687 -0.6605 40 1 3.6717 -2.0338 1.3920 41 1 2.1892 -2.7719 0.7144 42 1 1.3594 -0.0315 5.0076 43 1 3.3240 -3.4214 6.4068 44 1 1.9270 -3.6324 5.3196 45 1 4.5945 -2.3248 4.5790 46 1 4.0422 -3.9388 4.0585 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283842341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:29 Heat of formation + Delta-G solvation = -111.933796 kcal Electronic energy + Delta-G solvation = -29466.155263 eV Core-core repulsion = 25164.391664 eV Total energy + Delta-G solvation = -4301.763599 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.50977 -40.17466 -38.44438 -37.72220 -37.45083 -34.71708 -33.78442 -32.47359 -31.43576 -31.24053 -30.56412 -29.15897 -26.97000 -25.80925 -24.96842 -23.65068 -23.39644 -21.29684 -20.37738 -19.62414 -19.20964 -18.68679 -17.89124 -17.77619 -16.88025 -16.50652 -16.17551 -15.98759 -15.30886 -15.27978 -14.85001 -14.80208 -14.67402 -14.45031 -14.12585 -13.90702 -13.84090 -13.60233 -13.28852 -13.16614 -12.93731 -12.61710 -12.37688 -12.21595 -11.77073 -11.71151 -11.56614 -11.49782 -11.33054 -11.13024 -11.03513 -10.92873 -10.69240 -10.39162 -10.22009 -10.15741 -9.51082 -8.93534 -8.48150 -8.46034 -8.12346 -7.96351 -6.41909 -3.82638 1.03573 2.51994 2.61564 2.95720 3.08520 3.18081 3.26819 3.33016 3.83825 3.90413 4.07047 4.23038 4.30942 4.35624 4.49571 4.53054 4.65188 4.75184 4.85889 4.98412 5.00834 5.11301 5.15508 5.22949 5.27019 5.34542 5.45948 5.50817 5.59707 5.70062 5.80235 5.88045 5.91965 5.97665 6.08663 6.13654 6.21177 6.29025 6.30195 6.93039 7.18449 7.32993 7.55355 7.59286 7.91229 8.06170 8.60982 9.17860 9.53976 10.05395 10.75795 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.032155 B = 0.001891 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.586588 B =14802.779037 C =15198.774738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.133 3.867 3 H 0.090 0.910 4 C 0.078 3.922 5 H 0.063 0.937 6 N -0.656 5.656 7 C 0.052 3.948 8 C 0.441 3.559 9 O -0.582 6.582 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.278 1.278 17 H -0.269 1.269 18 H -0.284 1.284 19 C -0.125 4.125 20 C 0.106 3.894 21 N -0.598 5.598 22 C 0.599 3.401 23 O -0.537 6.537 24 C -0.089 4.089 25 C 0.039 3.961 26 O -0.301 6.301 27 C 0.013 3.987 28 C 0.016 3.984 29 O -0.299 6.299 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.352 0.648 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.191 0.809 43 H 0.120 0.880 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.775 -11.539 25.940 28.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.029 3.971 3 H 0.108 0.892 4 C -0.033 4.033 5 H 0.081 0.919 6 N -0.290 5.290 7 C -0.081 4.081 8 C 0.226 3.774 9 O -0.466 6.466 10 N -0.200 5.200 11 C -0.428 4.428 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.204 1.204 17 H -0.194 1.194 18 H -0.209 1.209 19 C -0.164 4.164 20 C -0.017 4.017 21 N -0.330 5.330 22 C 0.389 3.611 23 O -0.417 6.417 24 C -0.136 4.136 25 C -0.027 4.027 26 O -0.213 6.213 27 C -0.063 4.063 28 C -0.060 4.060 29 O -0.215 6.215 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.173 0.827 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.208 0.792 43 H 0.138 0.862 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.180 -10.464 26.246 28.279 hybrid contribution -0.734 -0.399 -1.049 1.341 sum -1.914 -10.864 25.196 27.505 Atomic orbital electron populations 1.22164 0.94510 1.02282 1.03226 1.21730 0.94279 0.97295 0.83761 0.89216 1.22632 0.95852 0.94059 0.90730 0.91913 1.60167 1.60201 1.06952 1.01632 1.21728 0.99995 0.97605 0.88785 1.19783 0.85155 0.89098 0.83370 1.90532 1.53251 1.21962 1.80873 1.41858 1.58939 1.14668 1.04567 1.19705 1.41475 0.95775 0.85870 0.87908 1.25265 0.97498 0.97004 0.98225 1.69616 1.48303 1.18102 1.18322 0.85852 0.78859 0.79885 0.79662 1.20434 1.19398 1.20936 1.22927 0.98834 1.00799 0.93841 1.22494 0.95736 0.87833 0.95652 1.48226 1.51782 1.28598 1.04420 1.16723 0.79456 0.84207 0.80726 1.90872 1.44047 1.23702 1.83043 1.20497 1.05192 0.93822 0.94124 1.23161 0.97553 0.96769 0.85241 1.86152 1.78361 1.25003 1.31740 1.23722 0.99508 0.82841 1.00193 1.23659 0.94121 1.00772 0.87466 1.86537 1.60545 1.39750 1.34620 0.92488 0.91156 0.91320 0.82716 0.93686 0.89493 0.77464 0.91891 0.89934 0.89292 0.89007 0.91444 0.79203 0.86175 0.90098 0.90396 0.86108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.10 37.16 0.34 -1.55 16 2 C 0.13 1.66 2.94 -66.95 -0.20 1.46 16 3 H 0.09 1.29 7.90 -51.93 -0.41 0.88 16 4 C 0.08 0.96 2.81 -65.88 -0.19 0.77 16 5 H 0.06 0.71 7.53 -51.93 -0.39 0.32 16 6 N -0.66 -10.32 5.97 -106.05 -0.63 -10.96 16 7 C 0.05 0.88 6.03 -4.97 -0.03 0.85 16 8 C 0.44 10.28 7.82 -10.99 -0.09 10.19 16 9 O -0.58 -15.77 15.78 5.55 0.09 -15.68 16 10 N -0.56 -14.16 5.29 -10.97 -0.06 -14.22 16 11 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 12 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 15 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 C -0.13 -1.36 6.77 -24.58 -0.17 -1.52 16 20 C 0.11 1.04 5.82 -2.53 -0.01 1.02 16 21 N -0.60 -7.20 3.06 -164.65 -0.50 -7.70 16 22 C 0.60 7.77 7.51 -12.99 -0.10 7.67 16 23 O -0.54 -8.29 15.39 5.15 0.08 -8.21 16 24 C -0.09 -0.93 6.56 -37.81 -0.25 -1.18 16 25 C 0.04 0.37 10.60 29.23 0.31 0.68 16 26 O -0.30 -2.46 10.47 -30.83 -0.32 -2.78 16 27 C 0.01 0.06 7.29 37.44 0.27 0.33 16 28 C 0.02 0.08 7.32 37.44 0.27 0.35 16 29 O -0.30 -2.59 6.90 -34.53 -0.24 -2.82 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.90 7.08 -51.93 -0.37 0.53 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.35 5.82 8.02 -39.29 -0.32 5.50 16 34 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 35 H 0.09 1.35 8.14 -51.92 -0.42 0.93 16 36 H 0.39 9.38 7.90 -40.82 -0.32 9.05 16 37 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.09 0.86 6.13 -51.93 -0.32 0.54 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.19 1.71 7.39 -52.48 -0.39 1.32 16 43 H 0.12 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.12 0.29 8.14 -51.93 -0.42 -0.14 16 LS Contribution 379.44 15.07 5.72 5.72 Total: -1.00 -33.81 379.44 -6.91 -40.72 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -6.67 Total: 12.50 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: -0.07 Total: 11.11 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.47 Total: -56.57 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.39 Total: -29.50 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.81 -6.91 -40.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283842341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.216 kcal (2) G-P(sol) polarization free energy of solvation -33.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds