Wall clock time and date at job start Wed Apr 1 2020 00:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.00017 * 2 1 4 4 C 1.54332 * 109.88554 * 238.91232 * 2 1 3 5 5 H 1.09000 * 110.71844 * 336.92686 * 4 2 1 6 6 N 1.46893 * 110.72064 * 100.02203 * 4 2 1 7 7 C 1.46904 * 110.99988 * 205.00108 * 6 4 2 8 8 C 1.50702 * 109.47319 * 180.02562 * 7 6 4 9 9 O 1.21285 * 119.99764 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99924 * 179.97438 * 8 7 6 11 11 C 1.37099 * 120.00006 * 179.97438 * 10 8 7 12 12 H 1.08001 * 119.99850 * 0.02562 * 11 10 8 13 13 C 1.38944 * 120.00173 * 180.02562 * 11 10 8 14 14 N 1.31420 * 119.99840 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00323 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47058 * 270.00037 * 15 13 11 17 17 H 1.48501 * 109.47089 * 29.99858 * 15 13 11 18 18 H 1.48503 * 109.47645 * 149.99843 * 15 13 11 19 19 C 1.55151 * 102.94168 * 218.38962 * 4 2 1 20 20 C 1.54913 * 101.58376 * 35.49644 * 19 4 2 21 21 N 1.47016 * 109.88531 * 121.10129 * 2 1 3 22 22 C 1.34779 * 125.64971 * 298.39410 * 21 2 1 23 23 O 1.21740 * 119.99594 * 354.52979 * 22 21 2 24 24 C 1.46369 * 120.00314 * 174.53089 * 22 21 2 25 25 C 1.33976 * 119.23364 * 184.88948 * 24 22 21 26 26 O 1.35000 * 121.68969 * 180.36824 * 25 24 22 27 27 C 1.43247 * 116.76645 * 342.80044 * 26 25 24 28 28 C 1.53548 * 108.09009 * 45.47979 * 27 26 25 29 29 O 1.36214 * 119.23210 * 4.61529 * 24 22 21 30 30 H 1.09004 * 109.46604 * 181.08950 * 1 2 3 31 31 H 1.08990 * 109.47119 * 301.08726 * 1 2 3 32 32 H 1.09001 * 109.47333 * 61.09506 * 1 2 3 33 33 H 1.00900 * 111.00612 * 328.95348 * 6 4 2 34 34 H 1.09006 * 109.47033 * 59.99917 * 7 6 4 35 35 H 1.09008 * 109.47201 * 300.00491 * 7 6 4 36 36 H 0.97000 * 120.00068 * 0.02562 * 10 8 7 37 37 H 0.97000 * 119.99570 * 179.97438 * 14 13 11 38 38 H 1.09006 * 111.00670 * 153.57530 * 19 4 2 39 39 H 1.09001 * 111.00455 * 277.42381 * 19 4 2 40 40 H 1.09002 * 110.36766 * 204.15147 * 20 19 4 41 41 H 1.09002 * 110.45527 * 81.87840 * 20 19 4 42 42 H 1.08003 * 119.15346 * 0.34363 * 25 24 22 43 43 H 1.08995 * 109.74400 * 165.13810 * 27 26 25 44 44 H 1.09001 * 109.73465 * 285.79070 * 27 26 25 45 45 H 1.09006 * 109.74723 * 61.47800 * 28 27 26 46 46 H 1.08999 * 109.75871 * 182.22038 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7494 -1.2429 5 1 1.3041 -1.4435 -1.6203 6 7 2.4565 0.1989 -2.2903 7 6 2.3872 -0.4239 -3.6190 8 6 2.8059 0.5766 -4.6653 9 8 3.1307 1.6979 -4.3365 10 7 2.8206 0.2249 -5.9663 11 6 3.2010 1.1353 -6.9182 12 1 3.4894 2.1341 -6.6255 13 6 3.2156 0.7730 -8.2595 14 7 2.8642 -0.4423 -8.6157 15 14 3.7346 2.0130 -9.5565 16 1 2.5433 2.7635 -10.0285 17 1 4.7163 2.9607 -8.9704 18 1 4.3567 1.3009 -10.7015 19 6 3.2876 -1.5141 -0.6926 20 6 2.8146 -1.8794 0.7366 21 7 2.0300 -0.7141 1.1838 22 6 1.8075 -0.3623 2.4656 23 8 1.2265 0.6770 2.7194 24 6 2.2643 -1.2296 3.5526 25 6 1.9493 -0.9158 4.8164 26 8 2.3507 -1.6763 5.8571 27 6 2.7880 -3.0062 5.5534 28 6 3.7236 -2.9346 4.3380 29 8 2.9950 -2.3400 3.2552 30 1 -0.3633 -1.0276 0.0195 31 1 -0.3633 0.5306 0.8800 32 1 -0.3634 0.4967 -0.8996 33 1 1.8956 1.0368 -2.2541 34 1 1.3654 -0.7491 -3.8150 35 1 3.0550 -1.2848 -3.6521 36 1 2.5612 -0.6720 -6.2292 37 1 2.8740 -0.6951 -9.5521 38 1 3.4853 -2.4109 -1.2799 39 1 4.1654 -0.8687 -0.6605 40 1 3.6717 -2.0338 1.3920 41 1 2.1892 -2.7719 0.7144 42 1 1.3594 -0.0315 5.0076 43 1 3.3240 -3.4214 6.4068 44 1 1.9270 -3.6324 5.3196 45 1 4.5945 -2.3248 4.5790 46 1 4.0422 -3.9388 4.0585 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283842341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:28 Heat of formation + Delta-G solvation = -138.089530 kcal Electronic energy + Delta-G solvation = -29467.289461 eV Core-core repulsion = 25164.391664 eV Total energy + Delta-G solvation = -4302.897797 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.17947 -41.06369 -40.11485 -38.91766 -38.06400 -36.19609 -35.53293 -33.28894 -33.12279 -32.29315 -31.60989 -29.74907 -28.42684 -26.52547 -26.39556 -24.98475 -24.22437 -22.15563 -21.40005 -20.93406 -20.23980 -19.89175 -19.35827 -18.54064 -17.93537 -17.55595 -17.21493 -16.89315 -16.83211 -16.37946 -16.02856 -15.80039 -15.64584 -15.46227 -15.33705 -15.20291 -14.69845 -14.68046 -14.37718 -14.28151 -14.08689 -13.83135 -13.48212 -13.29815 -13.12157 -13.08704 -12.83402 -12.68902 -12.41342 -12.35401 -12.11931 -11.97704 -11.89620 -11.72902 -11.59724 -11.49932 -11.04800 -10.33662 -10.00283 -9.85982 -9.37522 -9.18570 -8.45856 -5.94186 0.24937 1.38508 1.42523 1.54976 1.71632 1.90533 2.06834 2.26820 2.29513 2.35656 2.92110 3.21636 3.35533 3.45573 3.51526 3.65144 3.80852 4.02131 4.03769 4.05271 4.23444 4.25738 4.30991 4.33702 4.38918 4.51091 4.51865 4.55087 4.62053 4.67604 4.74079 4.82272 4.96166 4.98143 5.04801 5.15008 5.25446 5.33792 5.42285 5.72242 5.90041 6.10921 6.22584 6.31817 6.48365 6.61530 6.97287 7.14023 7.57779 8.13514 8.71396 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.032155 B = 0.001891 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.586588 B =14802.779037 C =15198.774738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.132 3.868 3 H 0.062 0.938 4 C 0.084 3.916 5 H 0.084 0.916 6 N -0.671 5.671 7 C 0.068 3.932 8 C 0.437 3.563 9 O -0.625 6.625 10 N -0.572 5.572 11 C -0.333 4.333 12 H 0.077 0.923 13 C -0.013 4.013 14 N -0.919 5.919 15 Si 0.992 3.008 16 H -0.271 1.271 17 H -0.275 1.275 18 H -0.270 1.270 19 C -0.121 4.121 20 C 0.112 3.888 21 N -0.600 5.600 22 C 0.591 3.409 23 O -0.574 6.574 24 C -0.100 4.100 25 C 0.052 3.948 26 O -0.310 6.310 27 C 0.007 3.993 28 C 0.011 3.989 29 O -0.307 6.307 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.344 0.656 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.104 0.896 39 H 0.069 0.931 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.187 0.813 43 H 0.151 0.849 44 H 0.088 0.912 45 H 0.077 0.923 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.562 -14.109 26.430 30.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.029 3.971 3 H 0.080 0.920 4 C -0.026 4.026 5 H 0.102 0.898 6 N -0.304 5.304 7 C -0.064 4.064 8 C 0.225 3.775 9 O -0.512 6.512 10 N -0.210 5.210 11 C -0.463 4.463 12 H 0.095 0.905 13 C -0.213 4.213 14 N -0.560 5.560 15 Si 0.815 3.185 16 H -0.197 1.197 17 H -0.200 1.200 18 H -0.195 1.195 19 C -0.160 4.160 20 C -0.010 4.010 21 N -0.332 5.332 22 C 0.382 3.618 23 O -0.457 6.457 24 C -0.148 4.148 25 C -0.016 4.016 26 O -0.222 6.222 27 C -0.067 4.067 28 C -0.064 4.064 29 O -0.223 6.223 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.164 0.836 34 H 0.090 0.910 35 H 0.128 0.872 36 H 0.232 0.768 37 H 0.087 0.913 38 H 0.123 0.877 39 H 0.087 0.913 40 H 0.117 0.883 41 H 0.105 0.895 42 H 0.203 0.797 43 H 0.169 0.831 44 H 0.106 0.894 45 H 0.096 0.904 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.959 -13.100 26.743 29.795 hybrid contribution -0.761 0.354 -1.076 1.365 sum -1.720 -12.746 25.668 28.710 Atomic orbital electron populations 1.22080 0.93752 1.02887 1.02622 1.21636 0.94855 0.96166 0.84486 0.91996 1.22671 0.97089 0.93511 0.89372 0.89828 1.60168 1.60904 1.07556 1.01803 1.21591 1.01715 0.95898 0.87240 1.20905 0.83202 0.89609 0.83811 1.90504 1.54712 1.24357 1.81607 1.41913 1.59477 1.14523 1.05050 1.19643 1.43646 0.95646 0.87353 0.90486 1.26012 0.96940 0.98825 0.99475 1.69668 1.48139 1.19051 1.19104 0.84947 0.78508 0.77715 0.77281 1.19691 1.19955 1.19476 1.22922 0.97322 1.01024 0.94721 1.22582 0.96038 0.87475 0.94899 1.48326 1.51724 1.29056 1.04070 1.17144 0.79057 0.84160 0.81443 1.90839 1.45824 1.25374 1.83686 1.20108 1.06648 0.94678 0.93338 1.23138 0.96551 0.96617 0.85286 1.86141 1.78054 1.26516 1.31460 1.24073 1.00037 0.81140 1.01481 1.23979 0.93622 1.02036 0.86779 1.86480 1.60633 1.38928 1.36290 0.91110 0.92849 0.90879 0.83608 0.91038 0.87206 0.76847 0.91301 0.87726 0.91264 0.88329 0.89545 0.79666 0.83098 0.89425 0.90429 0.82924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 9.10 71.98 0.65 -2.88 16 2 C 0.13 3.30 2.94 45.34 0.13 3.43 16 3 H 0.06 1.88 7.90 -2.39 -0.02 1.86 16 4 C 0.08 1.91 2.81 46.11 0.13 2.04 16 5 H 0.08 1.62 7.53 -2.39 -0.02 1.60 16 6 N -0.67 -20.66 5.97 -489.43 -2.92 -23.58 16 7 C 0.07 2.20 6.03 85.56 0.52 2.71 16 8 C 0.44 20.51 7.82 87.66 0.69 21.19 16 9 O -0.63 -34.80 15.78 -3.04 -0.05 -34.85 16 10 N -0.57 -28.99 5.29 -307.00 -1.62 -30.61 16 11 C -0.33 -18.90 9.68 84.04 0.81 -18.08 16 12 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 13 C -0.01 -0.68 5.50 84.92 0.47 -0.21 16 14 N -0.92 -49.09 13.05 21.66 0.28 -48.81 16 15 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 16 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 19 C -0.12 -2.38 6.77 31.99 0.22 -2.16 16 20 C 0.11 1.97 5.82 86.86 0.51 2.47 16 21 N -0.60 -14.16 3.06 -793.03 -2.43 -16.59 16 22 C 0.59 15.49 7.51 86.36 0.65 16.14 16 23 O -0.57 -18.57 15.39 -4.48 -0.07 -18.64 16 24 C -0.10 -2.03 6.56 23.42 0.15 -1.87 16 25 C 0.05 0.95 10.60 66.85 0.71 1.66 16 26 O -0.31 -4.61 10.47 -69.22 -0.72 -5.33 16 27 C 0.01 0.05 7.29 72.17 0.53 0.57 16 28 C 0.01 0.08 7.32 72.17 0.53 0.61 16 29 O -0.31 -4.72 6.90 -82.49 -0.57 -5.29 16 30 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.05 1.40 7.08 -2.39 -0.02 1.38 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.34 11.52 8.02 -89.69 -0.72 10.80 16 34 H 0.07 1.98 8.08 -2.38 -0.02 1.96 16 35 H 0.11 3.11 8.14 -2.38 -0.02 3.09 16 36 H 0.40 18.92 7.90 -92.71 -0.73 18.18 16 37 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 38 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.10 1.64 6.13 -2.39 -0.01 1.63 16 41 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.19 3.45 7.39 -2.91 -0.02 3.43 16 43 H 0.15 0.08 8.14 -2.39 -0.02 0.06 16 44 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 46 H 0.15 0.14 8.14 -2.39 -0.02 0.12 16 Total: -1.00 -75.29 379.44 0.19 -75.10 By element: Atomic # 1 Polarization: 38.42 SS G_CDS: -0.43 Total: 38.00 kcal Atomic # 6 Polarization: 18.93 SS G_CDS: 6.69 Total: 25.62 kcal Atomic # 7 Polarization: -112.90 SS G_CDS: -6.69 Total: -119.59 kcal Atomic # 8 Polarization: -62.70 SS G_CDS: -1.41 Total: -64.11 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -75.29 0.19 -75.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283842341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.987 kcal (2) G-P(sol) polarization free energy of solvation -75.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds