Wall clock time and date at job start Wed Apr 1 2020 00:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.87291 * 2 1 4 4 C 1.54324 * 109.87987 * 121.01029 * 2 1 3 5 5 H 1.09003 * 110.72116 * 23.24948 * 4 2 1 6 6 N 1.46895 * 110.72197 * 259.97671 * 4 2 1 7 7 C 1.46901 * 111.00232 * 155.00108 * 6 4 2 8 8 C 1.50702 * 109.47256 * 179.97438 * 7 6 4 9 9 O 1.21296 * 119.99829 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00287 * 179.97438 * 8 7 6 11 11 C 1.37097 * 120.00266 * 179.97438 * 10 8 7 12 12 H 1.08006 * 119.99882 * 0.02562 * 11 10 8 13 13 C 1.38952 * 120.00304 * 179.97438 * 11 10 8 14 14 N 1.31416 * 119.99662 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99962 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47174 * 90.00516 * 15 13 11 17 17 H 1.48505 * 109.46590 * 210.00383 * 15 13 11 18 18 H 1.48498 * 109.47116 * 330.00036 * 15 13 11 19 19 C 1.55400 * 102.83120 * 141.51554 * 4 2 1 20 20 C 1.54913 * 101.66426 * 324.66627 * 19 4 2 21 21 N 1.47019 * 109.88188 * 238.97372 * 2 1 3 22 22 C 1.34778 * 125.64687 * 61.61759 * 21 2 1 23 23 O 1.21736 * 120.00204 * 186.79838 * 22 21 2 24 24 C 1.46383 * 120.00103 * 6.79501 * 22 21 2 25 25 C 1.33976 * 119.22921 * 358.54537 * 24 22 21 26 26 O 1.35004 * 121.68706 * 180.34856 * 25 24 22 27 27 C 1.43248 * 116.76338 * 342.82037 * 26 25 24 28 28 C 1.53549 * 108.08604 * 45.48805 * 27 26 25 29 29 O 1.36207 * 119.23306 * 178.27774 * 24 22 21 30 30 H 1.09001 * 109.47493 * 200.81621 * 1 2 3 31 31 H 1.09002 * 109.46734 * 80.81677 * 1 2 3 32 32 H 1.09000 * 109.47169 * 320.81791 * 1 2 3 33 33 H 1.00898 * 110.99912 * 31.04178 * 6 4 2 34 34 H 1.08997 * 109.47163 * 299.99460 * 7 6 4 35 35 H 1.09001 * 109.47397 * 59.99734 * 7 6 4 36 36 H 0.97002 * 119.99927 * 0.02562 * 10 8 7 37 37 H 0.96992 * 119.99885 * 179.97438 * 14 13 11 38 38 H 1.08999 * 111.04356 * 206.52641 * 19 4 2 39 39 H 1.08998 * 110.92028 * 82.74699 * 19 4 2 40 40 H 1.08997 * 110.36517 * 278.08073 * 20 19 4 41 41 H 1.09004 * 110.36360 * 155.76009 * 20 19 4 42 42 H 1.08000 * 119.15599 * 0.32473 * 25 24 22 43 43 H 1.08994 * 109.73730 * 165.13434 * 27 26 25 44 44 H 1.08999 * 109.73582 * 285.79359 * 27 26 25 45 45 H 1.08998 * 109.75730 * 61.47333 * 28 27 26 46 46 H 1.08999 * 109.75406 * 182.16938 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0548 -0.7477 1.2439 5 1 1.3050 -1.4436 1.6204 6 7 2.4564 0.2020 2.2901 7 6 2.3870 -0.4190 3.6196 8 6 2.8058 0.5829 4.6646 9 8 3.1306 1.7039 4.3342 10 7 2.8194 0.2335 5.9661 11 6 3.2008 1.1448 6.9167 12 1 3.4900 2.1429 6.6225 13 6 3.2143 0.7847 8.2587 14 7 2.8619 -0.4297 8.6166 15 14 3.7334 2.0267 9.5538 16 1 2.5424 2.7786 10.0239 17 1 4.3544 1.3159 10.7003 18 1 4.7161 2.9726 8.9668 19 6 3.2875 -1.5152 0.6906 20 6 2.8145 -1.8785 -0.7392 21 7 2.0300 -0.7126 -1.1848 22 6 1.8075 -0.3589 -2.4661 23 8 2.1658 -1.0906 -3.3706 24 6 1.1350 0.9052 -2.7702 25 6 0.7209 1.6849 -1.7625 26 8 0.0894 2.8571 -1.9861 27 6 0.2115 3.4152 -3.2997 28 6 -0.0208 2.2905 -4.3190 29 8 0.9497 1.2640 -4.0711 30 1 -0.3634 -0.9606 0.3652 31 1 -0.3633 0.1640 -1.0145 32 1 -0.3633 0.7966 0.6493 33 1 1.8955 1.0398 2.2526 34 1 1.3652 -0.7437 3.8160 35 1 3.0548 -1.2798 3.6539 36 1 2.5600 -0.6631 6.2303 37 1 2.8717 -0.6812 9.5533 38 1 3.4851 -2.4128 1.2766 39 1 4.1657 -0.8704 0.6594 40 1 2.1886 -2.7706 -0.7164 41 1 3.6717 -2.0321 -1.3948 42 1 0.8964 1.3675 -0.7453 43 1 -0.5349 4.1974 -3.4381 44 1 1.2101 3.8318 -3.4313 45 1 -1.0267 1.8878 -4.2004 46 1 0.1040 2.6781 -5.3301 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283842342.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:33 Heat of formation + Delta-G solvation = -65.539364 kcal Electronic energy + Delta-G solvation = -29995.442215 eV Core-core repulsion = 25695.690429 eV Total energy + Delta-G solvation = -4299.751786 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.80266 -40.28253 -38.53576 -37.98175 -37.03072 -34.97072 -33.95117 -33.62772 -31.37306 -31.20543 -30.72702 -28.70449 -27.25660 -25.66290 -25.06995 -23.73659 -23.56090 -21.29482 -20.90359 -19.78562 -19.31464 -18.56844 -17.99470 -17.56008 -17.26023 -16.54979 -16.22520 -16.01481 -15.35434 -15.20634 -15.02509 -14.81369 -14.54008 -14.49862 -14.42269 -13.99825 -13.78218 -13.55935 -13.29265 -13.22232 -13.05524 -12.80587 -12.32339 -12.17237 -11.84317 -11.75843 -11.62666 -11.47467 -11.36828 -11.19734 -11.07060 -11.03218 -10.76849 -10.42538 -10.26008 -10.10524 -9.55444 -9.00864 -8.56301 -8.41688 -8.23562 -8.01337 -6.46189 -3.87130 1.04597 2.18781 2.78907 3.02171 3.14854 3.23250 3.24413 3.30089 3.83649 3.88258 3.94502 4.09416 4.18748 4.22332 4.42410 4.46285 4.54014 4.63936 4.68376 4.80010 4.94731 5.00353 5.05026 5.11455 5.13336 5.19260 5.22468 5.39329 5.42446 5.52868 5.59290 5.68805 5.72712 5.76092 5.87840 5.97498 6.07517 6.21058 6.44970 6.97504 7.02420 7.16503 7.44228 7.51233 7.91067 8.01187 8.55708 9.13255 9.48889 9.99723 10.71407 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019389 B = 0.002262 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.740393 B =12373.117383 C =13402.202969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.102 3.898 3 H 0.105 0.895 4 C 0.083 3.917 5 H 0.070 0.930 6 N -0.656 5.656 7 C 0.051 3.949 8 C 0.439 3.561 9 O -0.583 6.583 10 N -0.562 5.562 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.023 3.977 14 N -0.901 5.901 15 Si 0.930 3.070 16 H -0.278 1.278 17 H -0.283 1.283 18 H -0.269 1.269 19 C -0.125 4.125 20 C 0.112 3.888 21 N -0.605 5.605 22 C 0.595 3.405 23 O -0.525 6.525 24 C -0.088 4.088 25 C -0.032 4.032 26 O -0.297 6.297 27 C 0.008 3.992 28 C 0.019 3.981 29 O -0.288 6.288 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.352 0.648 34 H 0.047 0.953 35 H 0.089 0.911 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.229 0.771 43 H 0.121 0.879 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.838 -0.126 -20.375 21.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.002 4.002 3 H 0.122 0.878 4 C -0.028 4.028 5 H 0.088 0.912 6 N -0.289 5.289 7 C -0.082 4.082 8 C 0.225 3.775 9 O -0.467 6.467 10 N -0.199 5.199 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.179 4.179 14 N -0.542 5.542 15 Si 0.757 3.243 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.164 4.164 20 C -0.010 4.010 21 N -0.341 5.341 22 C 0.385 3.615 23 O -0.402 6.402 24 C -0.137 4.137 25 C -0.096 4.096 26 O -0.208 6.208 27 C -0.067 4.067 28 C -0.057 4.057 29 O -0.202 6.202 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.172 0.828 34 H 0.065 0.935 35 H 0.107 0.893 36 H 0.226 0.774 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.244 0.756 43 H 0.139 0.861 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.800 0.104 -21.103 22.172 hybrid contribution -1.017 0.137 0.868 1.344 sum -7.816 0.241 -20.235 21.694 Atomic orbital electron populations 1.22871 0.93851 1.04332 1.04007 1.22201 0.94476 0.97396 0.86118 0.87764 1.22706 0.96209 0.93944 0.89965 0.91244 1.60166 1.60108 1.06818 1.01831 1.21737 1.00182 0.97717 0.88527 1.19746 0.85333 0.89091 0.83355 1.90535 1.53403 1.21988 1.80808 1.41858 1.58735 1.14703 1.04566 1.19700 1.41583 0.95796 0.85854 0.87886 1.25269 0.97401 0.97001 0.98238 1.69607 1.48093 1.18171 1.18352 0.85856 0.78878 0.79896 0.79668 1.20407 1.20908 1.19375 1.22988 0.98745 1.01125 0.93495 1.22320 0.95421 0.87675 0.95620 1.48143 1.53111 1.29109 1.03770 1.16642 0.79295 0.84286 0.81297 1.90846 1.51884 1.53141 1.44375 1.20186 1.11298 0.97441 0.84746 1.26142 0.96019 0.84909 1.02571 1.86204 1.68439 1.34286 1.31906 1.23752 1.04504 0.96275 0.82185 1.23665 0.92662 0.88406 1.00961 1.86439 1.57783 1.54850 1.21095 0.90800 0.90655 0.89826 0.82778 0.93489 0.89326 0.77443 0.91828 0.89398 0.88975 0.91011 0.89830 0.75611 0.86109 0.90000 0.90562 0.86118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.56 7.86 37.16 0.29 -1.27 16 2 C 0.10 0.97 2.20 -66.95 -0.15 0.83 16 3 H 0.11 1.03 5.92 -51.93 -0.31 0.72 16 4 C 0.08 0.84 2.81 -65.75 -0.19 0.65 16 5 H 0.07 0.63 7.21 -51.93 -0.37 0.26 16 6 N -0.66 -8.91 5.97 -105.92 -0.63 -9.54 16 7 C 0.05 0.79 6.03 -4.97 -0.03 0.76 16 8 C 0.44 9.68 7.82 -10.99 -0.09 9.59 16 9 O -0.58 -14.97 15.78 5.54 0.09 -14.88 16 10 N -0.56 -13.57 5.29 -10.96 -0.06 -13.63 16 11 C -0.30 -8.10 9.68 -14.93 -0.14 -8.24 16 12 H 0.10 2.93 7.16 -52.48 -0.38 2.55 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 14 N -0.90 -23.86 13.05 55.50 0.72 -23.13 16 15 Si 0.93 20.55 29.55 -169.99 -5.02 15.53 16 16 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 19 C -0.12 -1.21 6.78 -24.45 -0.17 -1.38 16 20 C 0.11 1.11 6.89 -2.53 -0.02 1.09 16 21 N -0.61 -6.82 3.06 -185.72 -0.57 -7.39 16 22 C 0.59 8.32 7.46 -12.98 -0.10 8.23 16 23 O -0.53 -9.19 17.23 -10.05 -0.17 -9.37 16 24 C -0.09 -1.11 6.22 -37.81 -0.24 -1.35 16 25 C -0.03 -0.33 7.64 29.23 0.22 -0.11 16 26 O -0.30 -2.94 10.47 -30.84 -0.32 -3.27 16 27 C 0.01 0.06 7.29 37.44 0.27 0.33 16 28 C 0.02 0.15 7.32 37.44 0.27 0.42 16 29 O -0.29 -3.65 10.29 -45.73 -0.47 -4.12 16 30 H 0.07 0.56 7.61 -51.93 -0.40 0.16 16 31 H 0.07 0.67 5.10 -51.93 -0.27 0.40 16 32 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 33 H 0.35 4.85 8.02 -39.29 -0.31 4.53 16 34 H 0.05 0.64 8.08 -51.93 -0.42 0.22 16 35 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.39 9.03 7.90 -40.82 -0.32 8.70 16 37 H 0.27 6.82 8.31 -40.82 -0.34 6.49 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 42 H 0.23 2.14 1.51 -80.23 -0.12 2.02 16 43 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 371.69 15.07 5.60 5.60 Total: -1.00 -34.78 371.69 -7.23 -42.01 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -6.25 Total: 12.13 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: -0.14 Total: 10.05 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.54 Total: -53.69 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.88 Total: -31.64 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.78 -7.23 -42.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283842342.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.528 kcal (2) G-P(sol) polarization free energy of solvation -34.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds