Wall clock time and date at job start Wed Apr 1 2020 00:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.87291 * 2 1 4 4 C 1.54324 * 109.87987 * 121.01029 * 2 1 3 5 5 H 1.09003 * 110.72116 * 23.24948 * 4 2 1 6 6 N 1.46895 * 110.72197 * 259.97671 * 4 2 1 7 7 C 1.46901 * 111.00232 * 155.00108 * 6 4 2 8 8 C 1.50702 * 109.47256 * 179.97438 * 7 6 4 9 9 O 1.21296 * 119.99829 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00287 * 179.97438 * 8 7 6 11 11 C 1.37097 * 120.00266 * 179.97438 * 10 8 7 12 12 H 1.08006 * 119.99882 * 0.02562 * 11 10 8 13 13 C 1.38952 * 120.00304 * 179.97438 * 11 10 8 14 14 N 1.31416 * 119.99662 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99962 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47174 * 90.00516 * 15 13 11 17 17 H 1.48505 * 109.46590 * 210.00383 * 15 13 11 18 18 H 1.48498 * 109.47116 * 330.00036 * 15 13 11 19 19 C 1.55400 * 102.83120 * 141.51554 * 4 2 1 20 20 C 1.54913 * 101.66426 * 324.66627 * 19 4 2 21 21 N 1.47019 * 109.88188 * 238.97372 * 2 1 3 22 22 C 1.34778 * 125.64687 * 61.61759 * 21 2 1 23 23 O 1.21736 * 120.00204 * 186.79838 * 22 21 2 24 24 C 1.46383 * 120.00103 * 6.79501 * 22 21 2 25 25 C 1.33976 * 119.22921 * 358.54537 * 24 22 21 26 26 O 1.35004 * 121.68706 * 180.34856 * 25 24 22 27 27 C 1.43248 * 116.76338 * 342.82037 * 26 25 24 28 28 C 1.53549 * 108.08604 * 45.48805 * 27 26 25 29 29 O 1.36207 * 119.23306 * 178.27774 * 24 22 21 30 30 H 1.09001 * 109.47493 * 200.81621 * 1 2 3 31 31 H 1.09002 * 109.46734 * 80.81677 * 1 2 3 32 32 H 1.09000 * 109.47169 * 320.81791 * 1 2 3 33 33 H 1.00898 * 110.99912 * 31.04178 * 6 4 2 34 34 H 1.08997 * 109.47163 * 299.99460 * 7 6 4 35 35 H 1.09001 * 109.47397 * 59.99734 * 7 6 4 36 36 H 0.97002 * 119.99927 * 0.02562 * 10 8 7 37 37 H 0.96992 * 119.99885 * 179.97438 * 14 13 11 38 38 H 1.08999 * 111.04356 * 206.52641 * 19 4 2 39 39 H 1.08998 * 110.92028 * 82.74699 * 19 4 2 40 40 H 1.08997 * 110.36517 * 278.08073 * 20 19 4 41 41 H 1.09004 * 110.36360 * 155.76009 * 20 19 4 42 42 H 1.08000 * 119.15599 * 0.32473 * 25 24 22 43 43 H 1.08994 * 109.73730 * 165.13434 * 27 26 25 44 44 H 1.08999 * 109.73582 * 285.79359 * 27 26 25 45 45 H 1.08998 * 109.75730 * 61.47333 * 28 27 26 46 46 H 1.08999 * 109.75406 * 182.16938 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0548 -0.7477 1.2439 5 1 1.3050 -1.4436 1.6204 6 7 2.4564 0.2020 2.2901 7 6 2.3870 -0.4190 3.6196 8 6 2.8058 0.5829 4.6646 9 8 3.1306 1.7039 4.3342 10 7 2.8194 0.2335 5.9661 11 6 3.2008 1.1448 6.9167 12 1 3.4900 2.1429 6.6225 13 6 3.2143 0.7847 8.2587 14 7 2.8619 -0.4297 8.6166 15 14 3.7334 2.0267 9.5538 16 1 2.5424 2.7786 10.0239 17 1 4.3544 1.3159 10.7003 18 1 4.7161 2.9726 8.9668 19 6 3.2875 -1.5152 0.6906 20 6 2.8145 -1.8785 -0.7392 21 7 2.0300 -0.7126 -1.1848 22 6 1.8075 -0.3589 -2.4661 23 8 2.1658 -1.0906 -3.3706 24 6 1.1350 0.9052 -2.7702 25 6 0.7209 1.6849 -1.7625 26 8 0.0894 2.8571 -1.9861 27 6 0.2115 3.4152 -3.2997 28 6 -0.0208 2.2905 -4.3190 29 8 0.9497 1.2640 -4.0711 30 1 -0.3634 -0.9606 0.3652 31 1 -0.3633 0.1640 -1.0145 32 1 -0.3633 0.7966 0.6493 33 1 1.8955 1.0398 2.2526 34 1 1.3652 -0.7437 3.8160 35 1 3.0548 -1.2798 3.6539 36 1 2.5600 -0.6631 6.2303 37 1 2.8717 -0.6812 9.5533 38 1 3.4851 -2.4128 1.2766 39 1 4.1657 -0.8704 0.6594 40 1 2.1886 -2.7706 -0.7164 41 1 3.6717 -2.0321 -1.3948 42 1 0.8964 1.3675 -0.7453 43 1 -0.5349 4.1974 -3.4381 44 1 1.2101 3.8318 -3.4313 45 1 -1.0267 1.8878 -4.2004 46 1 0.1040 2.6781 -5.3301 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283842342.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:32 Heat of formation + Delta-G solvation = -92.772811 kcal Electronic energy + Delta-G solvation = -29996.623146 eV Core-core repulsion = 25695.690429 eV Total energy + Delta-G solvation = -4300.932717 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.62835 -41.11728 -40.08078 -39.15859 -37.88805 -36.25565 -35.63335 -34.50686 -33.22497 -32.07697 -31.62095 -29.50055 -28.52666 -26.76854 -26.12742 -25.04652 -24.38759 -22.11281 -21.73197 -21.04970 -20.55249 -19.86672 -19.34973 -18.48821 -18.18033 -17.52322 -17.38520 -17.02612 -16.77246 -16.31278 -16.05857 -15.93659 -15.71329 -15.55512 -15.44064 -15.19784 -14.97170 -14.53095 -14.38962 -14.20087 -14.03278 -13.72997 -13.53438 -13.43220 -13.13382 -12.86777 -12.80436 -12.55249 -12.41429 -12.37392 -12.11048 -12.05075 -12.00242 -11.76945 -11.59980 -11.46423 -11.08345 -10.29043 -9.96935 -9.93368 -9.35439 -9.24089 -8.43396 -5.91181 0.15800 1.35565 1.40307 1.44655 1.56558 1.92567 2.11218 2.20006 2.31079 2.46606 2.89355 3.24538 3.26075 3.36213 3.40225 3.50655 3.66092 3.77286 3.90545 3.93175 3.99910 4.19057 4.26143 4.27647 4.36035 4.41907 4.51127 4.55044 4.58255 4.64129 4.72526 4.73127 4.75761 4.84269 4.94563 5.11739 5.17630 5.26537 5.45037 5.71787 5.90102 6.11420 6.13771 6.29400 6.39135 6.64524 6.93055 7.17283 7.62051 8.17278 8.73852 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019389 B = 0.002262 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.740393 B =12373.117383 C =13402.202969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.103 3.897 3 H 0.102 0.898 4 C 0.088 3.912 5 H 0.094 0.906 6 N -0.669 5.669 7 C 0.066 3.934 8 C 0.439 3.561 9 O -0.623 6.623 10 N -0.574 5.574 11 C -0.330 4.330 12 H 0.078 0.922 13 C -0.013 4.013 14 N -0.920 5.920 15 Si 0.989 3.011 16 H -0.271 1.271 17 H -0.273 1.273 18 H -0.274 1.274 19 C -0.119 4.119 20 C 0.109 3.891 21 N -0.601 5.601 22 C 0.588 3.412 23 O -0.575 6.575 24 C -0.115 4.115 25 C -0.007 4.007 26 O -0.305 6.305 27 C 0.004 3.996 28 C 0.013 3.987 29 O -0.320 6.320 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.350 0.650 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.397 0.603 37 H 0.277 0.723 38 H 0.107 0.893 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.238 0.762 43 H 0.156 0.844 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.091 -0.083 -19.942 21.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.000 4.000 3 H 0.119 0.881 4 C -0.022 4.022 5 H 0.112 0.888 6 N -0.303 5.303 7 C -0.066 4.066 8 C 0.226 3.774 9 O -0.510 6.510 10 N -0.212 5.212 11 C -0.460 4.460 12 H 0.096 0.904 13 C -0.213 4.213 14 N -0.561 5.561 15 Si 0.813 3.187 16 H -0.197 1.197 17 H -0.198 1.198 18 H -0.199 1.199 19 C -0.157 4.157 20 C -0.012 4.012 21 N -0.335 5.335 22 C 0.380 3.620 23 O -0.456 6.456 24 C -0.163 4.163 25 C -0.072 4.072 26 O -0.217 6.217 27 C -0.071 4.071 28 C -0.062 4.062 29 O -0.235 6.235 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.116 0.884 33 H 0.170 0.830 34 H 0.095 0.905 35 H 0.126 0.874 36 H 0.231 0.769 37 H 0.086 0.914 38 H 0.125 0.875 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.092 0.908 42 H 0.252 0.748 43 H 0.174 0.826 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.072 0.139 -20.651 22.173 hybrid contribution -0.651 0.203 0.660 0.949 sum -8.723 0.342 -19.990 21.814 Atomic orbital electron populations 1.22836 0.92281 1.05624 1.03909 1.22259 0.95612 0.96949 0.85212 0.88118 1.22733 0.96893 0.93553 0.88987 0.88842 1.60109 1.61013 1.07544 1.01613 1.21596 1.01990 0.95841 0.87165 1.20918 0.83089 0.89659 0.83717 1.90508 1.54612 1.24320 1.81514 1.41931 1.59559 1.14523 1.05168 1.19633 1.43394 0.95689 0.87293 0.90366 1.25979 0.97048 0.98724 0.99503 1.69661 1.48324 1.19141 1.18981 0.84981 0.78528 0.77810 0.77371 1.19660 1.19793 1.19892 1.22953 0.97882 1.01537 0.93369 1.22431 0.95385 0.87922 0.95508 1.48197 1.52474 1.29340 1.03524 1.16985 0.78989 0.84537 0.81538 1.90802 1.54348 1.54663 1.45809 1.20106 1.13137 0.97690 0.85403 1.26264 0.93989 0.84598 1.02396 1.86187 1.67954 1.33767 1.33743 1.24068 1.05836 0.96632 0.80530 1.24005 0.92044 0.87569 1.02617 1.86375 1.59355 1.56499 1.21318 0.89599 0.91472 0.88368 0.82952 0.90545 0.87412 0.76901 0.91400 0.87469 0.90708 0.89393 0.90798 0.74771 0.82612 0.89950 0.89931 0.83480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.60 7.86 71.98 0.57 -2.04 16 2 C 0.10 1.79 2.20 45.34 0.10 1.89 16 3 H 0.10 1.86 5.92 -2.39 -0.01 1.85 16 4 C 0.09 1.55 2.81 46.19 0.13 1.68 16 5 H 0.09 1.28 7.21 -2.39 -0.02 1.27 16 6 N -0.67 -16.72 5.97 -489.01 -2.92 -19.64 16 7 C 0.07 1.87 6.03 85.56 0.52 2.39 16 8 C 0.44 19.02 7.82 87.66 0.69 19.71 16 9 O -0.62 -32.18 15.78 -3.08 -0.05 -32.23 16 10 N -0.57 -27.66 5.29 -306.98 -1.62 -29.28 16 11 C -0.33 -18.04 9.68 84.04 0.81 -17.23 16 12 H 0.08 4.58 7.16 -2.91 -0.02 4.56 16 13 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 14 N -0.92 -48.10 13.05 21.66 0.28 -47.81 16 15 Si 0.99 41.82 29.55 68.60 2.03 43.85 16 16 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 17 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 18 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 19 C -0.12 -2.07 6.78 32.07 0.22 -1.85 16 20 C 0.11 2.06 6.89 86.86 0.60 2.66 16 21 N -0.60 -13.18 3.06 -859.68 -2.63 -15.81 16 22 C 0.59 16.80 7.46 86.36 0.64 17.45 16 23 O -0.57 -21.01 17.23 10.08 0.17 -20.83 16 24 C -0.12 -2.92 6.22 23.42 0.15 -2.77 16 25 C -0.01 -0.14 7.64 66.85 0.51 0.37 16 26 O -0.30 -5.55 10.47 -69.26 -0.73 -6.28 16 27 C 0.00 0.05 7.29 72.17 0.53 0.57 16 28 C 0.01 0.18 7.32 72.17 0.53 0.70 16 29 O -0.32 -8.21 10.29 -71.70 -0.74 -8.95 16 30 H 0.09 1.01 7.61 -2.39 -0.02 0.99 16 31 H 0.07 1.08 5.10 -2.39 -0.01 1.07 16 32 H 0.10 1.10 8.10 -2.39 -0.02 1.08 16 33 H 0.35 9.02 8.02 -89.70 -0.72 8.30 16 34 H 0.08 1.77 8.08 -2.39 -0.02 1.75 16 35 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 36 H 0.40 18.04 7.90 -92.71 -0.73 17.31 16 37 H 0.28 13.60 8.31 -92.71 -0.77 12.83 16 38 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 1.55 8.11 -2.39 -0.02 1.53 16 42 H 0.24 4.13 1.51 -28.97 -0.04 4.08 16 43 H 0.16 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.15 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -77.54 371.69 -0.20 -77.74 By element: Atomic # 1 Polarization: 36.36 SS G_CDS: -0.44 Total: 35.92 kcal Atomic # 6 Polarization: 16.88 SS G_CDS: 6.45 Total: 23.32 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -6.90 Total: -112.55 kcal Atomic # 8 Polarization: -66.95 SS G_CDS: -1.34 Total: -68.29 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -77.54 -0.20 -77.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283842342.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.030 kcal (2) G-P(sol) polarization free energy of solvation -77.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds