Wall clock time and date at job start Wed Apr 1 2020 00:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.45363 * 2 1 4 4 C 1.53313 * 109.46260 * 119.96817 * 2 1 3 5 5 C 1.51191 * 108.61876 * 200.10610 * 4 2 1 6 6 O 1.21281 * 119.77320 * 108.75956 * 5 4 2 7 7 N 1.33637 * 120.45639 * 288.73796 * 5 4 2 8 8 C 1.46914 * 120.63267 * 359.73867 * 7 5 4 9 9 C 1.53219 * 108.82071 * 71.94775 * 8 7 5 10 10 N 1.46091 * 109.70581 * 278.38254 * 9 8 7 11 11 C 1.34787 * 118.75226 * 243.87440 * 10 9 8 12 12 O 1.21348 * 119.99949 * 188.80319 * 11 10 9 13 13 C 1.49450 * 119.99468 * 8.80355 * 11 10 9 14 14 O 1.21345 * 120.00037 * 7.83670 * 13 11 10 15 15 N 1.34777 * 119.99576 * 187.83261 * 13 11 10 16 16 C 1.47417 * 125.65011 * 359.69641 * 15 13 11 17 17 C 1.55128 * 104.72541 * 155.81269 * 16 15 13 18 18 C 1.55158 * 101.48631 * 37.29489 * 17 16 15 19 19 O 1.42899 * 110.87317 * 82.76400 * 18 17 16 20 20 C 1.50700 * 110.72333 * 205.97038 * 18 17 16 21 21 H 1.08002 * 119.99740 * 354.97462 * 20 18 17 22 22 C 1.37877 * 120.00171 * 174.97340 * 20 18 17 23 23 N 1.31518 * 119.99661 * 0.02562 * 22 20 18 24 24 Si 1.86800 * 120.00211 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46882 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47335 * 120.00121 * 24 22 20 27 27 H 1.48498 * 109.46936 * 240.00196 * 24 22 20 28 28 C 1.47024 * 125.64458 * 179.97438 * 15 13 11 29 29 H 1.08999 * 109.46968 * 297.95428 * 1 2 3 30 30 H 1.09001 * 109.46972 * 57.95641 * 1 2 3 31 31 H 1.09000 * 109.46821 * 177.95454 * 1 2 3 32 32 H 1.08998 * 109.61615 * 319.84661 * 4 2 1 33 33 H 1.09000 * 109.60983 * 80.37038 * 4 2 1 34 34 H 0.97010 * 119.68340 * 179.72169 * 7 5 4 35 35 H 1.08998 * 109.58460 * 191.75122 * 8 7 5 36 36 H 1.08997 * 109.57845 * 312.15092 * 8 7 5 37 37 H 1.09002 * 109.43124 * 38.48847 * 9 8 7 38 38 H 1.09004 * 109.43082 * 158.38573 * 9 8 7 39 39 H 1.09000 * 110.36457 * 274.74327 * 16 15 13 40 40 H 1.09003 * 110.37211 * 37.06745 * 16 15 13 41 41 H 1.09005 * 111.19299 * 279.19224 * 17 16 15 42 42 H 1.09001 * 110.94267 * 155.28724 * 17 16 15 43 43 H 0.96699 * 113.99973 * 184.94132 * 19 18 17 44 44 H 0.97006 * 119.99567 * 180.02562 * 23 22 20 45 45 H 1.09000 * 109.88586 * 300.44251 * 28 15 13 46 46 H 1.08998 * 109.88217 * 61.61070 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0408 -0.7221 1.2523 5 6 3.4702 -0.2988 1.5042 6 8 3.7277 0.4235 2.4438 7 7 4.4520 -0.7154 0.6989 8 6 4.1624 -1.5956 -0.4411 9 6 3.4378 -0.7845 -1.5203 10 7 2.0171 -0.6885 -1.1937 11 6 1.1209 -1.2567 -2.0249 12 8 -0.0654 -1.0571 -1.8660 13 6 1.5885 -2.1323 -3.1421 14 8 2.7579 -2.4474 -3.2173 15 7 0.7112 -2.5721 -4.0659 16 6 -0.7320 -2.2727 -4.0914 17 6 -1.1437 -2.4424 -5.5773 18 6 -0.2728 -3.6539 -6.0029 19 8 -0.8926 -4.8845 -5.6245 20 6 -0.0090 -3.6260 -7.4864 21 1 -0.4797 -2.8759 -8.1046 22 6 0.8334 -4.5581 -8.0544 23 7 1.4062 -5.4718 -7.3017 24 14 1.1609 -4.5232 -9.8932 25 1 0.4013 -3.4063 -10.5101 26 1 2.6131 -4.3273 -10.1337 27 1 0.7281 -5.8088 -10.4975 28 6 1.0342 -3.4345 -5.2120 29 1 -0.3633 0.4817 0.9078 30 1 -0.3633 0.5453 -0.8711 31 1 -0.3633 -1.0270 -0.0367 32 1 1.4228 -0.4515 2.1084 33 1 2.0008 -1.7999 1.0950 34 1 5.3647 -0.4337 0.8686 35 1 5.0951 -1.9895 -0.8448 36 1 3.5269 -2.4189 -0.1147 37 1 3.8671 0.2161 -1.5713 38 1 3.5545 -1.2787 -2.4849 39 1 -1.2765 -2.9764 -3.4617 40 1 -0.9131 -1.2494 -3.7625 41 1 -0.8916 -1.5561 -6.1598 42 1 -2.2052 -2.6749 -5.6634 43 1 -0.3528 -5.6673 -5.8006 44 1 1.9991 -6.1274 -7.7013 45 1 1.7741 -2.9464 -5.8464 46 1 1.4188 -4.3914 -4.8591 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326215213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:25 Heat of formation + Delta-G solvation = -97.271275 kcal Electronic energy + Delta-G solvation = -31365.608720 eV Core-core repulsion = 27064.480936 eV Total energy + Delta-G solvation = -4301.127785 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.42472 -39.94206 -38.82254 -37.64406 -36.71843 -34.96603 -34.36056 -32.89403 -32.32276 -30.31906 -28.75490 -28.36198 -27.93937 -25.98233 -24.32173 -23.60541 -22.73700 -21.37845 -20.14153 -19.70375 -19.06894 -17.60756 -17.28838 -17.16184 -16.98413 -16.33703 -16.17266 -15.79169 -15.44360 -15.07179 -14.95045 -14.45264 -14.27414 -14.01904 -13.52555 -13.32513 -13.15710 -13.09230 -12.98917 -12.80795 -12.58745 -12.50033 -12.22827 -12.07165 -11.83016 -11.71986 -11.60745 -11.43255 -11.13067 -10.87308 -10.70768 -10.53636 -10.32695 -10.09555 -10.07374 -9.60297 -9.40600 -8.83944 -8.80714 -8.56875 -8.38912 -8.16549 -6.38262 -4.46681 1.56227 2.34337 2.37472 3.04712 3.14159 3.23728 3.27079 3.34668 3.52867 4.16570 4.19968 4.37904 4.58897 4.71056 4.84175 4.87334 4.90470 4.94248 5.03642 5.26244 5.37024 5.43976 5.60526 5.68856 5.70608 5.75473 5.89031 5.92917 5.95439 6.08191 6.20681 6.40741 6.42880 6.53482 6.66592 6.70917 6.72894 6.96043 6.98487 7.09145 7.22150 7.63064 7.66289 7.90050 7.93025 7.96495 8.25051 8.57788 9.19740 9.28870 10.69509 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022117 B = 0.002957 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.689271 B = 9466.867795 C =10260.991854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.149 3.851 3 H 0.079 0.921 4 C -0.154 4.154 5 C 0.518 3.482 6 O -0.554 6.554 7 N -0.726 5.726 8 C 0.098 3.902 9 C 0.033 3.967 10 N -0.585 5.585 11 C 0.507 3.493 12 O -0.501 6.501 13 C 0.503 3.497 14 O -0.529 6.529 15 N -0.568 5.568 16 C 0.100 3.900 17 C -0.121 4.121 18 C 0.247 3.753 19 O -0.583 6.583 20 C -0.536 4.536 21 H 0.068 0.932 22 C 0.070 3.930 23 N -0.895 5.895 24 Si 0.904 3.096 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.099 3.901 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.400 0.600 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.172 0.828 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.382 0.618 44 H 0.270 0.730 45 H 0.075 0.925 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.742 7.372 11.586 14.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.046 3.954 3 H 0.097 0.903 4 C -0.195 4.195 5 C 0.305 3.695 6 O -0.432 6.432 7 N -0.378 5.378 8 C -0.027 4.027 9 C -0.089 4.089 10 N -0.320 5.320 11 C 0.291 3.709 12 O -0.376 6.376 13 C 0.287 3.713 14 O -0.411 6.411 15 N -0.298 5.298 16 C -0.022 4.022 17 C -0.159 4.159 18 C 0.207 3.793 19 O -0.391 6.391 20 C -0.575 4.575 21 H 0.086 0.914 22 C -0.133 4.133 23 N -0.534 5.534 24 Si 0.731 3.269 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.022 4.022 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.129 0.871 33 H 0.113 0.887 34 H 0.236 0.764 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.188 0.812 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.233 0.767 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.303 7.897 12.297 14.795 hybrid contribution 1.366 -0.421 -0.989 1.738 sum 3.669 7.476 11.308 14.043 Atomic orbital electron populations 1.22372 0.91009 1.04418 1.01372 1.21123 0.96939 0.95221 0.82118 0.90331 1.22545 0.93319 1.03033 1.00614 1.20563 0.88100 0.79522 0.81358 1.90748 1.84476 1.37533 1.30444 1.46099 1.10681 1.50950 1.30084 1.22146 1.02178 0.92599 0.85748 1.23633 0.78475 1.02090 1.04698 1.47717 1.07437 1.53867 1.22963 1.20436 0.86236 0.80729 0.83534 1.90819 1.16592 1.59760 1.70470 1.19779 0.85688 0.82685 0.83163 1.90292 1.16372 1.58868 1.75585 1.48793 1.09642 1.46499 1.24865 1.22679 0.79524 1.01513 0.98455 1.22872 1.00882 0.98946 0.93223 1.19523 0.85775 0.82108 0.91920 1.86132 1.48850 1.17288 1.86874 1.21544 1.28288 1.15491 0.92144 0.91356 1.25079 0.94453 0.94687 0.99067 1.69694 1.30706 1.17087 1.35878 0.86338 0.78088 0.78232 0.84216 1.19558 1.20756 1.20714 1.23295 1.01645 0.92996 0.84256 0.93709 0.90191 0.90215 0.87082 0.88659 0.76400 0.87924 0.90143 0.91251 0.81220 0.90994 0.89833 0.90382 0.90254 0.76739 0.91990 0.90684 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 7.46 37.16 0.28 -1.17 16 2 C 0.15 1.57 3.21 -67.95 -0.22 1.35 16 3 H 0.08 0.82 7.95 -51.93 -0.41 0.41 16 4 C -0.15 -1.52 4.99 -27.48 -0.14 -1.65 16 5 C 0.52 5.93 7.11 -11.25 -0.08 5.85 16 6 O -0.55 -8.38 17.91 5.56 0.10 -8.28 16 7 N -0.73 -6.57 5.30 -60.00 -0.32 -6.89 16 8 C 0.10 0.85 6.49 -3.70 -0.02 0.82 16 9 C 0.03 0.35 5.77 -4.15 -0.02 0.32 16 10 N -0.59 -6.90 2.77 -166.86 -0.46 -7.36 16 11 C 0.51 7.31 7.48 -11.58 -0.09 7.23 16 12 O -0.50 -7.52 8.91 5.50 0.05 -7.47 16 13 C 0.50 8.58 7.73 -11.59 -0.09 8.49 16 14 O -0.53 -9.35 13.39 5.50 0.07 -9.28 16 15 N -0.57 -10.64 3.32 -170.89 -0.57 -11.21 16 16 C 0.10 1.75 5.96 -2.41 -0.01 1.73 16 17 C -0.12 -2.30 6.24 -24.46 -0.15 -2.45 16 18 C 0.25 5.59 0.85 -89.93 -0.08 5.51 16 19 O -0.58 -13.82 13.08 -35.23 -0.46 -14.28 16 20 C -0.54 -13.23 8.12 -34.44 -0.28 -13.50 16 21 H 0.07 1.67 7.78 -52.49 -0.41 1.27 16 22 C 0.07 1.74 5.28 -17.82 -0.09 1.64 16 23 N -0.89 -22.38 10.97 55.43 0.61 -21.77 16 24 Si 0.90 19.49 29.54 -169.99 -5.02 14.46 16 25 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 28 C 0.10 2.16 5.24 -3.06 -0.02 2.14 16 29 H 0.04 0.40 8.10 -51.93 -0.42 -0.02 16 30 H 0.08 0.97 6.75 -51.93 -0.35 0.62 16 31 H 0.08 0.97 6.47 -51.93 -0.34 0.63 16 32 H 0.11 1.01 7.95 -51.93 -0.41 0.59 16 33 H 0.10 0.90 7.07 -51.93 -0.37 0.53 16 34 H 0.40 3.10 8.91 -40.82 -0.36 2.74 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.75 7.03 -51.93 -0.36 0.39 16 37 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 38 H 0.17 2.16 3.92 -56.72 -0.22 1.94 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.08 1.33 6.37 -51.93 -0.33 1.00 16 41 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 42 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.38 9.24 7.44 45.56 0.34 9.58 16 44 H 0.27 6.49 8.31 -40.82 -0.34 6.16 16 45 H 0.07 1.77 7.81 -51.93 -0.41 1.36 16 46 H 0.07 1.73 7.92 -51.93 -0.41 1.32 16 LS Contribution 358.79 15.07 5.41 5.41 Total: -1.00 -27.91 358.79 -7.32 -35.23 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -5.71 Total: 15.13 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: -1.02 Total: 16.32 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.74 Total: -47.23 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -0.24 Total: -39.31 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.91 -7.32 -35.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326215213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.044 kcal (2) G-P(sol) polarization free energy of solvation -27.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds