Wall clock time and date at job start Wed Apr 1 2020 00:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.45363 * 2 1 4 4 C 1.53313 * 109.46260 * 119.96817 * 2 1 3 5 5 C 1.51191 * 108.61876 * 200.10610 * 4 2 1 6 6 O 1.21281 * 119.77320 * 108.75956 * 5 4 2 7 7 N 1.33637 * 120.45639 * 288.73796 * 5 4 2 8 8 C 1.46914 * 120.63267 * 359.73867 * 7 5 4 9 9 C 1.53219 * 108.82071 * 71.94775 * 8 7 5 10 10 N 1.46091 * 109.70581 * 278.38254 * 9 8 7 11 11 C 1.34787 * 118.75226 * 243.87440 * 10 9 8 12 12 O 1.21348 * 119.99949 * 188.80319 * 11 10 9 13 13 C 1.49450 * 119.99468 * 8.80355 * 11 10 9 14 14 O 1.21345 * 120.00037 * 7.83670 * 13 11 10 15 15 N 1.34777 * 119.99576 * 187.83261 * 13 11 10 16 16 C 1.47417 * 125.65011 * 359.69641 * 15 13 11 17 17 C 1.55128 * 104.72541 * 155.81269 * 16 15 13 18 18 C 1.55158 * 101.48631 * 37.29489 * 17 16 15 19 19 O 1.42899 * 110.87317 * 82.76400 * 18 17 16 20 20 C 1.50700 * 110.72333 * 205.97038 * 18 17 16 21 21 H 1.08002 * 119.99740 * 354.97462 * 20 18 17 22 22 C 1.37877 * 120.00171 * 174.97340 * 20 18 17 23 23 N 1.31518 * 119.99661 * 0.02562 * 22 20 18 24 24 Si 1.86800 * 120.00211 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46882 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47335 * 120.00121 * 24 22 20 27 27 H 1.48498 * 109.46936 * 240.00196 * 24 22 20 28 28 C 1.47024 * 125.64458 * 179.97438 * 15 13 11 29 29 H 1.08999 * 109.46968 * 297.95428 * 1 2 3 30 30 H 1.09001 * 109.46972 * 57.95641 * 1 2 3 31 31 H 1.09000 * 109.46821 * 177.95454 * 1 2 3 32 32 H 1.08998 * 109.61615 * 319.84661 * 4 2 1 33 33 H 1.09000 * 109.60983 * 80.37038 * 4 2 1 34 34 H 0.97010 * 119.68340 * 179.72169 * 7 5 4 35 35 H 1.08998 * 109.58460 * 191.75122 * 8 7 5 36 36 H 1.08997 * 109.57845 * 312.15092 * 8 7 5 37 37 H 1.09002 * 109.43124 * 38.48847 * 9 8 7 38 38 H 1.09004 * 109.43082 * 158.38573 * 9 8 7 39 39 H 1.09000 * 110.36457 * 274.74327 * 16 15 13 40 40 H 1.09003 * 110.37211 * 37.06745 * 16 15 13 41 41 H 1.09005 * 111.19299 * 279.19224 * 17 16 15 42 42 H 1.09001 * 110.94267 * 155.28724 * 17 16 15 43 43 H 0.96699 * 113.99973 * 184.94132 * 19 18 17 44 44 H 0.97006 * 119.99567 * 180.02562 * 23 22 20 45 45 H 1.09000 * 109.88586 * 300.44251 * 28 15 13 46 46 H 1.08998 * 109.88217 * 61.61070 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0408 -0.7221 1.2523 5 6 3.4702 -0.2988 1.5042 6 8 3.7277 0.4235 2.4438 7 7 4.4520 -0.7154 0.6989 8 6 4.1624 -1.5956 -0.4411 9 6 3.4378 -0.7845 -1.5203 10 7 2.0171 -0.6885 -1.1937 11 6 1.1209 -1.2567 -2.0249 12 8 -0.0654 -1.0571 -1.8660 13 6 1.5885 -2.1323 -3.1421 14 8 2.7579 -2.4474 -3.2173 15 7 0.7112 -2.5721 -4.0659 16 6 -0.7320 -2.2727 -4.0914 17 6 -1.1437 -2.4424 -5.5773 18 6 -0.2728 -3.6539 -6.0029 19 8 -0.8926 -4.8845 -5.6245 20 6 -0.0090 -3.6260 -7.4864 21 1 -0.4797 -2.8759 -8.1046 22 6 0.8334 -4.5581 -8.0544 23 7 1.4062 -5.4718 -7.3017 24 14 1.1609 -4.5232 -9.8932 25 1 0.4013 -3.4063 -10.5101 26 1 2.6131 -4.3273 -10.1337 27 1 0.7281 -5.8088 -10.4975 28 6 1.0342 -3.4345 -5.2120 29 1 -0.3633 0.4817 0.9078 30 1 -0.3633 0.5453 -0.8711 31 1 -0.3633 -1.0270 -0.0367 32 1 1.4228 -0.4515 2.1084 33 1 2.0008 -1.7999 1.0950 34 1 5.3647 -0.4337 0.8686 35 1 5.0951 -1.9895 -0.8448 36 1 3.5269 -2.4189 -0.1147 37 1 3.8671 0.2161 -1.5713 38 1 3.5545 -1.2787 -2.4849 39 1 -1.2765 -2.9764 -3.4617 40 1 -0.9131 -1.2494 -3.7625 41 1 -0.8916 -1.5561 -6.1598 42 1 -2.2052 -2.6749 -5.6634 43 1 -0.3528 -5.6673 -5.8006 44 1 1.9991 -6.1274 -7.7013 45 1 1.7741 -2.9464 -5.8464 46 1 1.4188 -4.3914 -4.8591 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326215213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:24 Heat of formation + Delta-G solvation = -119.143124 kcal Electronic energy + Delta-G solvation = -31366.557155 eV Core-core repulsion = 27064.480936 eV Total energy + Delta-G solvation = -4302.076219 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.52276 -41.05119 -40.11224 -39.10056 -37.81969 -36.16398 -35.68146 -34.21829 -33.85203 -31.88339 -29.72579 -29.65132 -29.11343 -27.57372 -25.71379 -24.48017 -24.07806 -22.53426 -21.42587 -20.99315 -20.28183 -19.10993 -18.57074 -18.22439 -18.03670 -17.56720 -17.38796 -17.13336 -16.78416 -16.35726 -16.23593 -16.06568 -15.31420 -15.02248 -14.89491 -14.78498 -14.74915 -14.19821 -14.08924 -13.87742 -13.79805 -13.62904 -13.44397 -13.31300 -13.18523 -13.05002 -12.83240 -12.64448 -12.47719 -12.34583 -12.30378 -12.24125 -12.05820 -11.31444 -11.11718 -11.01965 -10.66017 -10.50865 -10.30423 -9.85144 -9.68805 -9.61441 -8.25401 -6.40225 0.31592 1.18496 1.42477 1.46726 1.47052 1.56450 2.07561 2.23659 2.32173 2.41156 3.01025 3.08051 3.38112 3.73371 3.80822 3.87719 4.02976 4.05109 4.06861 4.15954 4.18520 4.23745 4.38330 4.47126 4.65227 4.65405 4.72373 4.82338 4.91154 4.93176 5.04090 5.07580 5.10711 5.14906 5.27232 5.35571 5.48727 5.53963 5.75194 5.77609 5.93146 6.06413 6.14965 6.35205 6.61283 6.69554 6.91677 7.12812 7.29674 7.37500 8.80830 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022117 B = 0.002957 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.689271 B = 9466.867795 C =10260.991854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.151 3.849 3 H 0.086 0.914 4 C -0.147 4.147 5 C 0.517 3.483 6 O -0.593 6.593 7 N -0.713 5.713 8 C 0.104 3.896 9 C 0.033 3.967 10 N -0.575 5.575 11 C 0.513 3.487 12 O -0.507 6.507 13 C 0.500 3.500 14 O -0.538 6.538 15 N -0.579 5.579 16 C 0.112 3.888 17 C -0.116 4.116 18 C 0.232 3.768 19 O -0.588 6.588 20 C -0.555 4.555 21 H 0.065 0.935 22 C 0.030 3.970 23 N -0.912 5.912 24 Si 0.960 3.040 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.281 1.281 28 C 0.120 3.880 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.122 0.878 33 H 0.101 0.899 34 H 0.408 0.592 35 H 0.126 0.874 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.153 0.847 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.376 0.624 44 H 0.271 0.729 45 H 0.050 0.950 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.906 8.435 12.350 15.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.049 3.951 3 H 0.104 0.896 4 C -0.188 4.188 5 C 0.304 3.696 6 O -0.475 6.475 7 N -0.364 5.364 8 C -0.021 4.021 9 C -0.089 4.089 10 N -0.309 5.309 11 C 0.296 3.704 12 O -0.383 6.383 13 C 0.285 3.715 14 O -0.419 6.419 15 N -0.311 5.311 16 C -0.009 4.009 17 C -0.154 4.154 18 C 0.192 3.808 19 O -0.396 6.396 20 C -0.593 4.593 21 H 0.083 0.917 22 C -0.171 4.171 23 N -0.551 5.551 24 Si 0.786 3.214 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.206 1.206 28 C -0.002 4.002 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.140 0.860 33 H 0.120 0.880 34 H 0.246 0.754 35 H 0.144 0.856 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.169 0.831 39 H 0.088 0.912 40 H 0.121 0.879 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.226 0.774 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.496 8.973 13.074 16.052 hybrid contribution 1.387 -0.738 -1.195 1.974 sum 3.882 8.235 11.879 14.966 Atomic orbital electron populations 1.22248 0.90862 1.03580 1.01856 1.21212 0.96987 0.95400 0.81508 0.89629 1.22504 0.92535 1.03242 1.00501 1.20805 0.88925 0.78937 0.80933 1.90739 1.85100 1.39441 1.32183 1.46032 1.10846 1.50134 1.29392 1.22149 1.03102 0.91879 0.84934 1.23582 0.77950 1.03004 1.04329 1.47767 1.07595 1.52848 1.22701 1.19915 0.86428 0.80853 0.83219 1.90835 1.16794 1.60134 1.70513 1.20408 0.85339 0.82496 0.83304 1.90326 1.16792 1.58940 1.75867 1.48769 1.10479 1.46940 1.24876 1.22626 0.78619 1.02479 0.97201 1.22867 1.00753 0.97450 0.94344 1.19722 0.87011 0.82734 0.91353 1.86123 1.48987 1.17553 1.86897 1.21820 1.28498 1.15601 0.93431 0.91674 1.25731 0.94355 0.94525 1.02494 1.69782 1.30913 1.17384 1.37051 0.85467 0.77745 0.78082 0.80102 1.19235 1.20693 1.20647 1.22719 1.00560 0.92006 0.84948 0.91576 0.91467 0.91496 0.85968 0.88040 0.75448 0.85578 0.90422 0.89847 0.83061 0.91172 0.87940 0.89666 0.89439 0.77435 0.91991 0.93154 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 7.46 71.98 0.54 -1.93 16 2 C 0.15 2.82 3.21 45.16 0.14 2.97 16 3 H 0.09 1.55 7.95 -2.39 -0.02 1.53 16 4 C -0.15 -2.53 4.99 30.11 0.15 -2.38 16 5 C 0.52 10.74 7.11 87.99 0.63 11.36 16 6 O -0.59 -17.06 17.91 -3.03 -0.05 -17.12 16 7 N -0.71 -11.18 5.30 -462.76 -2.45 -13.64 16 8 C 0.10 1.54 6.49 86.37 0.56 2.10 16 9 C 0.03 0.63 5.77 86.53 0.50 1.12 16 10 N -0.58 -12.42 2.77 -800.19 -2.22 -14.64 16 11 C 0.51 14.06 7.48 87.27 0.65 14.71 16 12 O -0.51 -14.37 8.91 -3.24 -0.03 -14.39 16 13 C 0.50 16.78 7.73 87.27 0.67 17.46 16 14 O -0.54 -18.85 13.39 -3.23 -0.04 -18.89 16 15 N -0.58 -21.70 3.32 -812.93 -2.70 -24.40 16 16 C 0.11 3.80 5.96 86.93 0.52 4.32 16 17 C -0.12 -4.34 6.24 32.06 0.20 -4.14 16 18 C 0.23 10.61 0.85 -10.35 -0.01 10.61 16 19 O -0.59 -28.34 13.08 -148.98 -1.95 -30.29 16 20 C -0.56 -27.65 8.12 25.60 0.21 -27.45 16 21 H 0.07 3.20 7.78 -2.91 -0.02 3.18 16 22 C 0.03 1.50 5.28 84.65 0.45 1.95 16 23 N -0.91 -46.45 10.97 21.45 0.24 -46.21 16 24 Si 0.96 40.06 29.54 68.60 2.03 42.08 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 26 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 27 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 28 C 0.12 5.38 5.24 86.73 0.45 5.83 16 29 H 0.07 1.00 8.10 -2.39 -0.02 0.98 16 30 H 0.07 1.49 6.75 -2.39 -0.02 1.47 16 31 H 0.07 1.49 6.47 -2.39 -0.02 1.47 16 32 H 0.12 1.89 7.95 -2.39 -0.02 1.87 16 33 H 0.10 1.66 7.07 -2.39 -0.02 1.64 16 34 H 0.41 5.35 8.91 -92.70 -0.83 4.53 16 35 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.08 1.27 7.03 -2.39 -0.02 1.25 16 37 H 0.08 1.39 8.11 -2.39 -0.02 1.37 16 38 H 0.15 3.65 3.92 -78.33 -0.31 3.34 16 39 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.10 3.10 6.37 -2.39 -0.02 3.08 16 41 H 0.08 3.03 8.04 -2.38 -0.02 3.01 16 42 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 43 H 0.38 18.75 7.44 -74.06 -0.55 18.20 16 44 H 0.27 13.19 8.31 -92.70 -0.77 12.42 16 45 H 0.05 2.45 7.81 -2.39 -0.02 2.44 16 46 H 0.05 2.30 7.92 -2.39 -0.02 2.28 16 Total: -1.00 -60.01 358.79 -2.15 -62.16 By element: Atomic # 1 Polarization: 39.43 SS G_CDS: -0.63 Total: 38.80 kcal Atomic # 6 Polarization: 30.86 SS G_CDS: 5.66 Total: 36.53 kcal Atomic # 7 Polarization: -91.75 SS G_CDS: -7.14 Total: -98.88 kcal Atomic # 8 Polarization: -78.62 SS G_CDS: -2.08 Total: -80.69 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.08 kcal Total: -60.01 -2.15 -62.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326215213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.978 kcal (2) G-P(sol) polarization free energy of solvation -60.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds