Wall clock time and date at job start Wed Apr 1 2020 00:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.45445 * 2 1 4 4 C 1.53305 * 109.46648 * 119.98074 * 2 1 3 5 5 C 1.51185 * 108.62160 * 200.10082 * 4 2 1 6 6 O 1.21284 * 119.76999 * 108.75213 * 5 4 2 7 7 N 1.33631 * 120.46391 * 288.77905 * 5 4 2 8 8 C 1.46923 * 120.62312 * 359.69742 * 7 5 4 9 9 C 1.52630 * 108.94195 * 71.87610 * 8 7 5 10 10 N 1.46068 * 110.01060 * 278.59566 * 9 8 7 11 11 C 1.34768 * 118.73197 * 243.80486 * 10 9 8 12 12 O 1.21359 * 120.00114 * 192.85975 * 11 10 9 13 13 C 1.49448 * 120.00342 * 12.86146 * 11 10 9 14 14 O 1.21348 * 119.99598 * 6.62819 * 13 11 10 15 15 N 1.34778 * 120.00233 * 186.62889 * 13 11 10 16 16 C 1.47027 * 125.64776 * 359.69033 * 15 13 11 17 17 C 1.54336 * 107.26415 * 178.84947 * 16 15 13 18 18 C 1.55154 * 103.02126 * 338.14177 * 17 16 15 19 19 O 1.42898 * 111.00638 * 277.23132 * 18 17 16 20 20 C 1.50700 * 111.00373 * 153.37794 * 18 17 16 21 21 H 1.07993 * 120.00091 * 6.35253 * 20 18 17 22 22 C 1.37880 * 120.00060 * 186.34826 * 20 18 17 23 23 N 1.31513 * 119.99847 * 0.02562 * 22 20 18 24 24 Si 1.86801 * 120.00119 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46908 * 60.00246 * 24 22 20 26 26 H 1.48498 * 109.46988 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47158 * 300.00230 * 24 22 20 28 28 C 1.47426 * 125.64791 * 179.97438 * 15 13 11 29 29 H 1.09003 * 109.47213 * 177.38919 * 1 2 3 30 30 H 1.08999 * 109.46977 * 297.38885 * 1 2 3 31 31 H 1.09000 * 109.47507 * 57.38664 * 1 2 3 32 32 H 1.09002 * 109.60990 * 319.84600 * 4 2 1 33 33 H 1.09003 * 109.60894 * 80.36088 * 4 2 1 34 34 H 0.96998 * 119.68999 * 179.68309 * 7 5 4 35 35 H 1.09000 * 109.57929 * 191.75164 * 8 7 5 36 36 H 1.09003 * 109.57950 * 312.01329 * 8 7 5 37 37 H 1.09003 * 109.31044 * 158.41956 * 9 8 7 38 38 H 1.09000 * 109.26264 * 38.75082 * 9 8 7 39 39 H 1.08993 * 109.88256 * 298.39514 * 16 15 13 40 40 H 1.09002 * 109.88042 * 59.55971 * 16 15 13 41 41 H 1.08992 * 110.84855 * 219.67405 * 17 16 15 42 42 H 1.09002 * 110.66466 * 96.52054 * 17 16 15 43 43 H 0.96704 * 114.00450 * 173.64733 * 19 18 17 44 44 H 0.97000 * 119.99957 * 179.97438 * 23 22 20 45 45 H 1.08995 * 110.36462 * 322.93203 * 28 15 13 46 46 H 1.09002 * 110.36353 * 85.14356 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0409 -0.7223 1.2520 5 6 3.4703 -0.2992 1.5039 6 8 3.7278 0.4230 2.4437 7 7 4.4519 -0.7149 0.6982 8 6 4.1621 -1.5950 -0.4421 9 6 3.4376 -0.7900 -1.5176 10 7 2.0169 -0.6884 -1.1939 11 6 1.1208 -1.2559 -2.0253 12 8 -0.0591 -0.9943 -1.9158 13 6 1.5802 -2.2075 -3.0822 14 8 2.7401 -2.5624 -3.1164 15 7 0.7062 -2.6715 -3.9973 16 6 -0.7222 -2.3305 -4.0680 17 6 -1.3100 -3.0707 -5.2880 18 6 -0.0602 -3.3464 -6.1651 19 8 0.2719 -2.2043 -6.9571 20 6 -0.2665 -4.5612 -7.0327 21 1 -1.2305 -5.0473 -7.0609 22 6 0.7754 -5.0521 -7.7906 23 7 1.9495 -4.4605 -7.7560 24 14 0.5195 -6.5575 -8.8666 25 1 -0.5476 -6.2794 -9.8612 26 1 1.7844 -6.8809 -9.5743 27 1 0.1185 -7.7092 -8.0193 28 6 1.0229 -3.6096 -5.0896 29 1 -0.3634 -1.0266 -0.0468 30 1 -0.3633 0.4728 0.9125 31 1 -0.3634 0.5539 -0.8656 32 1 1.4228 -0.4518 2.1082 33 1 2.0007 -1.8001 1.0945 34 1 5.3644 -0.4329 0.8675 35 1 5.0948 -1.9882 -0.8463 36 1 3.5291 -2.4200 -0.1151 37 1 3.5554 -1.2871 -2.4805 38 1 3.8697 0.2093 -1.5711 39 1 -1.2261 -2.6543 -3.1574 40 1 -0.8405 -1.2546 -4.1971 41 1 -2.0220 -2.4390 -5.8190 42 1 -1.7797 -4.0053 -4.9813 43 1 1.1001 -2.2935 -7.4482 44 1 2.6826 -4.8060 -8.2889 45 1 2.0148 -3.4029 -5.4914 46 1 0.9650 -4.6386 -4.7346 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326215214.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:28 Heat of formation + Delta-G solvation = -101.449208 kcal Electronic energy + Delta-G solvation = -31415.964427 eV Core-core repulsion = 27114.655474 eV Total energy + Delta-G solvation = -4301.308953 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.39077 -39.92072 -38.79593 -37.57494 -36.70990 -34.95679 -34.31643 -32.89065 -32.32520 -30.37408 -28.77327 -28.34500 -27.92997 -25.97224 -24.32722 -23.58080 -22.71149 -21.28522 -20.11771 -19.76308 -18.98305 -17.60156 -17.32723 -17.12789 -16.95341 -16.35502 -16.20307 -15.64904 -15.29132 -15.09110 -14.94742 -14.54880 -14.23633 -14.04523 -13.54093 -13.31469 -13.14797 -13.10908 -12.98341 -12.79952 -12.55062 -12.44591 -12.18219 -12.04049 -11.81149 -11.70334 -11.56374 -11.41862 -11.07799 -10.88905 -10.66164 -10.56477 -10.29956 -10.22692 -10.07255 -9.60280 -9.43409 -8.84134 -8.80587 -8.60368 -8.48465 -8.01587 -6.37141 -4.46564 1.58765 2.36047 2.39522 3.05388 3.16722 3.22855 3.24800 3.38751 3.55105 4.17414 4.20006 4.41237 4.59857 4.72311 4.85781 4.87828 4.91120 4.95073 5.04670 5.26689 5.38358 5.44166 5.61217 5.69686 5.70039 5.73643 5.87142 5.95068 5.95245 6.09995 6.21879 6.41824 6.43439 6.54160 6.64633 6.70296 6.75823 6.97331 6.99812 7.08691 7.21602 7.64837 7.67206 7.91655 7.93888 7.97175 8.28601 8.57455 9.20186 9.28917 10.70013 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022911 B = 0.002956 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.817072 B = 9469.448656 C =10263.682518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.150 3.850 3 H 0.079 0.921 4 C -0.154 4.154 5 C 0.518 3.482 6 O -0.554 6.554 7 N -0.726 5.726 8 C 0.098 3.902 9 C 0.045 3.955 10 N -0.588 5.588 11 C 0.508 3.492 12 O -0.500 6.500 13 C 0.504 3.496 14 O -0.531 6.531 15 N -0.568 5.568 16 C 0.110 3.890 17 C -0.122 4.122 18 C 0.249 3.751 19 O -0.581 6.581 20 C -0.538 4.538 21 H 0.068 0.932 22 C 0.072 3.928 23 N -0.894 5.894 24 Si 0.905 3.095 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.275 1.275 28 C 0.091 3.909 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.400 0.600 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.163 0.837 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.381 0.619 44 H 0.271 0.729 45 H 0.092 0.908 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.849 5.238 12.539 13.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.047 3.953 3 H 0.097 0.903 4 C -0.195 4.195 5 C 0.305 3.695 6 O -0.432 6.432 7 N -0.378 5.378 8 C -0.026 4.026 9 C -0.077 4.077 10 N -0.323 5.323 11 C 0.291 3.709 12 O -0.375 6.375 13 C 0.287 3.713 14 O -0.413 6.413 15 N -0.298 5.298 16 C -0.013 4.013 17 C -0.160 4.160 18 C 0.208 3.792 19 O -0.389 6.389 20 C -0.576 4.576 21 H 0.086 0.914 22 C -0.132 4.132 23 N -0.532 5.532 24 Si 0.732 3.268 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.200 1.200 28 C -0.030 4.030 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.129 0.871 33 H 0.113 0.887 34 H 0.236 0.764 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.179 0.821 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.231 0.769 44 H 0.081 0.919 45 H 0.110 0.890 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.392 5.749 13.253 14.513 hybrid contribution 1.069 -1.006 -0.671 1.614 sum 2.461 4.744 12.582 13.670 Atomic orbital electron populations 1.22354 0.91083 1.04233 1.01627 1.21096 0.96878 0.95290 0.82049 0.90293 1.22546 0.93352 1.03008 1.00611 1.20554 0.88088 0.79522 0.81368 1.90749 1.84469 1.37524 1.30462 1.46095 1.10700 1.50973 1.30038 1.22028 1.02225 0.92600 0.85788 1.23214 0.78608 1.01892 1.03997 1.47669 1.07329 1.54143 1.23163 1.20471 0.86120 0.81375 0.82924 1.90820 1.17248 1.60050 1.69381 1.19768 0.85607 0.83115 0.82770 1.90398 1.16879 1.59790 1.74199 1.48753 1.10306 1.43276 1.27465 1.22188 0.79878 1.00236 0.98984 1.22715 0.98759 1.00052 0.94465 1.19623 0.87753 0.85036 0.86745 1.86138 1.46520 1.41856 1.64429 1.21421 0.97979 1.11858 1.26339 0.91428 1.25076 0.94804 0.97235 0.96047 1.69688 1.01890 1.40914 1.40749 0.86444 0.77663 0.82336 0.80385 1.19954 1.21075 1.19996 1.23532 1.03424 0.90682 0.85333 0.90693 0.93562 0.89816 0.87092 0.88685 0.76382 0.87900 0.90114 0.82095 0.91211 0.91354 0.91246 0.90491 0.90320 0.76929 0.91882 0.88955 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 7.47 37.16 0.28 -1.20 16 2 C 0.15 1.60 3.21 -67.95 -0.22 1.39 16 3 H 0.08 0.84 7.95 -51.93 -0.41 0.43 16 4 C -0.15 -1.52 4.99 -27.49 -0.14 -1.65 16 5 C 0.52 5.95 7.11 -11.26 -0.08 5.87 16 6 O -0.55 -8.40 17.91 5.55 0.10 -8.30 16 7 N -0.73 -6.62 5.30 -60.30 -0.32 -6.93 16 8 C 0.10 0.86 6.46 -4.00 -0.03 0.84 16 9 C 0.05 0.49 5.63 -4.46 -0.03 0.46 16 10 N -0.59 -7.08 2.78 -167.25 -0.46 -7.55 16 11 C 0.51 7.48 7.41 -11.59 -0.09 7.40 16 12 O -0.50 -7.68 9.30 5.49 0.05 -7.63 16 13 C 0.50 8.74 7.70 -11.59 -0.09 8.65 16 14 O -0.53 -9.51 13.42 5.50 0.07 -9.44 16 15 N -0.57 -10.74 3.33 -171.03 -0.57 -11.31 16 16 C 0.11 1.92 5.50 -3.05 -0.02 1.90 16 17 C -0.12 -2.31 6.13 -24.89 -0.15 -2.47 16 18 C 0.25 5.63 0.87 -89.63 -0.08 5.56 16 19 O -0.58 -13.93 13.16 -35.23 -0.46 -14.39 16 20 C -0.54 -13.21 8.27 -34.44 -0.28 -13.49 16 21 H 0.07 1.63 7.79 -52.49 -0.41 1.23 16 22 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 23 N -0.89 -22.33 10.69 55.43 0.59 -21.74 16 24 Si 0.90 19.40 29.54 -169.99 -5.02 14.38 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 28 C 0.09 1.98 5.38 -2.54 -0.01 1.96 16 29 H 0.07 0.90 6.57 -51.93 -0.34 0.56 16 30 H 0.05 0.42 8.09 -51.93 -0.42 0.00 16 31 H 0.08 1.04 6.66 -51.93 -0.35 0.70 16 32 H 0.11 1.00 7.95 -51.93 -0.41 0.59 16 33 H 0.09 0.89 7.08 -51.93 -0.37 0.52 16 34 H 0.40 3.13 8.91 -40.82 -0.36 2.76 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.76 7.04 -51.93 -0.37 0.40 16 37 H 0.16 2.10 4.17 -55.57 -0.23 1.86 16 38 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.07 1.09 7.57 -51.93 -0.39 0.70 16 40 H 0.07 1.22 7.72 -51.93 -0.40 0.82 16 41 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.08 1.40 8.03 -51.93 -0.42 0.98 16 43 H 0.38 9.31 7.57 45.56 0.34 9.65 16 44 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 45 H 0.09 2.22 7.33 -51.93 -0.38 1.84 16 46 H 0.07 1.54 8.03 -51.93 -0.42 1.13 16 LS Contribution 359.31 15.07 5.41 5.41 Total: -1.00 -27.98 359.31 -7.37 -35.34 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -5.73 Total: 15.27 kcal Atomic # 6 Polarization: 17.91 SS G_CDS: -1.02 Total: 16.89 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: -0.76 Total: -47.53 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -0.24 Total: -39.76 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.98 -7.37 -35.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326215214.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.105 kcal (2) G-P(sol) polarization free energy of solvation -27.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds