Wall clock time and date at job start Wed Apr 1 2020 00:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.45445 * 2 1 4 4 C 1.53305 * 109.46648 * 119.98074 * 2 1 3 5 5 C 1.51185 * 108.62160 * 200.10082 * 4 2 1 6 6 O 1.21284 * 119.76999 * 108.75213 * 5 4 2 7 7 N 1.33631 * 120.46391 * 288.77905 * 5 4 2 8 8 C 1.46923 * 120.62312 * 359.69742 * 7 5 4 9 9 C 1.52630 * 108.94195 * 71.87610 * 8 7 5 10 10 N 1.46068 * 110.01060 * 278.59566 * 9 8 7 11 11 C 1.34768 * 118.73197 * 243.80486 * 10 9 8 12 12 O 1.21359 * 120.00114 * 192.85975 * 11 10 9 13 13 C 1.49448 * 120.00342 * 12.86146 * 11 10 9 14 14 O 1.21348 * 119.99598 * 6.62819 * 13 11 10 15 15 N 1.34778 * 120.00233 * 186.62889 * 13 11 10 16 16 C 1.47027 * 125.64776 * 359.69033 * 15 13 11 17 17 C 1.54336 * 107.26415 * 178.84947 * 16 15 13 18 18 C 1.55154 * 103.02126 * 338.14177 * 17 16 15 19 19 O 1.42898 * 111.00638 * 277.23132 * 18 17 16 20 20 C 1.50700 * 111.00373 * 153.37794 * 18 17 16 21 21 H 1.07993 * 120.00091 * 6.35253 * 20 18 17 22 22 C 1.37880 * 120.00060 * 186.34826 * 20 18 17 23 23 N 1.31513 * 119.99847 * 0.02562 * 22 20 18 24 24 Si 1.86801 * 120.00119 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46908 * 60.00246 * 24 22 20 26 26 H 1.48498 * 109.46988 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47158 * 300.00230 * 24 22 20 28 28 C 1.47426 * 125.64791 * 179.97438 * 15 13 11 29 29 H 1.09003 * 109.47213 * 177.38919 * 1 2 3 30 30 H 1.08999 * 109.46977 * 297.38885 * 1 2 3 31 31 H 1.09000 * 109.47507 * 57.38664 * 1 2 3 32 32 H 1.09002 * 109.60990 * 319.84600 * 4 2 1 33 33 H 1.09003 * 109.60894 * 80.36088 * 4 2 1 34 34 H 0.96998 * 119.68999 * 179.68309 * 7 5 4 35 35 H 1.09000 * 109.57929 * 191.75164 * 8 7 5 36 36 H 1.09003 * 109.57950 * 312.01329 * 8 7 5 37 37 H 1.09003 * 109.31044 * 158.41956 * 9 8 7 38 38 H 1.09000 * 109.26264 * 38.75082 * 9 8 7 39 39 H 1.08993 * 109.88256 * 298.39514 * 16 15 13 40 40 H 1.09002 * 109.88042 * 59.55971 * 16 15 13 41 41 H 1.08992 * 110.84855 * 219.67405 * 17 16 15 42 42 H 1.09002 * 110.66466 * 96.52054 * 17 16 15 43 43 H 0.96704 * 114.00450 * 173.64733 * 19 18 17 44 44 H 0.97000 * 119.99957 * 179.97438 * 23 22 20 45 45 H 1.08995 * 110.36462 * 322.93203 * 28 15 13 46 46 H 1.09002 * 110.36353 * 85.14356 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0409 -0.7223 1.2520 5 6 3.4703 -0.2992 1.5039 6 8 3.7278 0.4230 2.4437 7 7 4.4519 -0.7149 0.6982 8 6 4.1621 -1.5950 -0.4421 9 6 3.4376 -0.7900 -1.5176 10 7 2.0169 -0.6884 -1.1939 11 6 1.1208 -1.2559 -2.0253 12 8 -0.0591 -0.9943 -1.9158 13 6 1.5802 -2.2075 -3.0822 14 8 2.7401 -2.5624 -3.1164 15 7 0.7062 -2.6715 -3.9973 16 6 -0.7222 -2.3305 -4.0680 17 6 -1.3100 -3.0707 -5.2880 18 6 -0.0602 -3.3464 -6.1651 19 8 0.2719 -2.2043 -6.9571 20 6 -0.2665 -4.5612 -7.0327 21 1 -1.2305 -5.0473 -7.0609 22 6 0.7754 -5.0521 -7.7906 23 7 1.9495 -4.4605 -7.7560 24 14 0.5195 -6.5575 -8.8666 25 1 -0.5476 -6.2794 -9.8612 26 1 1.7844 -6.8809 -9.5743 27 1 0.1185 -7.7092 -8.0193 28 6 1.0229 -3.6096 -5.0896 29 1 -0.3634 -1.0266 -0.0468 30 1 -0.3633 0.4728 0.9125 31 1 -0.3634 0.5539 -0.8656 32 1 1.4228 -0.4518 2.1082 33 1 2.0007 -1.8001 1.0945 34 1 5.3644 -0.4329 0.8675 35 1 5.0948 -1.9882 -0.8463 36 1 3.5291 -2.4200 -0.1151 37 1 3.5554 -1.2871 -2.4805 38 1 3.8697 0.2093 -1.5711 39 1 -1.2261 -2.6543 -3.1574 40 1 -0.8405 -1.2546 -4.1971 41 1 -2.0220 -2.4390 -5.8190 42 1 -1.7797 -4.0053 -4.9813 43 1 1.1001 -2.2935 -7.4482 44 1 2.6826 -4.8060 -8.2889 45 1 2.0148 -3.4029 -5.4914 46 1 0.9650 -4.6386 -4.7346 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326215214.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:27 Heat of formation + Delta-G solvation = -123.364479 kcal Electronic energy + Delta-G solvation = -31416.914745 eV Core-core repulsion = 27114.655474 eV Total energy + Delta-G solvation = -4302.259271 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.49485 -41.03732 -40.09678 -39.03229 -37.81897 -36.13052 -35.68462 -34.21636 -33.85828 -31.93843 -29.70360 -29.67063 -29.11283 -27.56537 -25.72265 -24.46349 -24.05106 -22.44563 -21.47107 -20.98465 -20.20880 -19.09957 -18.61226 -18.19688 -18.03977 -17.55201 -17.36777 -17.04031 -16.75074 -16.32311 -16.28601 -16.10980 -15.38827 -15.04773 -14.85993 -14.74785 -14.64584 -14.20045 -14.07434 -13.90595 -13.74899 -13.59474 -13.43639 -13.31291 -13.15275 -13.00766 -12.78351 -12.63561 -12.48236 -12.32741 -12.29679 -12.25378 -12.07359 -11.42599 -11.12308 -11.02232 -10.64931 -10.51164 -10.33537 -9.87691 -9.71541 -9.52695 -8.23232 -6.39140 0.32831 1.21123 1.46354 1.46968 1.48166 1.54863 2.09963 2.24721 2.32256 2.42445 3.02910 3.10328 3.37888 3.73467 3.80325 3.88168 4.03166 4.06490 4.08516 4.15573 4.18876 4.23001 4.36123 4.46679 4.65493 4.69738 4.75614 4.81894 4.89489 4.93677 5.05134 5.06538 5.10746 5.14415 5.29069 5.37757 5.46698 5.52617 5.77095 5.77532 5.93316 6.08149 6.15233 6.35546 6.61787 6.70226 6.93748 7.13027 7.30079 7.37807 8.81938 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022911 B = 0.002956 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.817072 B = 9469.448656 C =10263.682518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.152 3.848 3 H 0.084 0.916 4 C -0.146 4.146 5 C 0.517 3.483 6 O -0.593 6.593 7 N -0.713 5.713 8 C 0.105 3.895 9 C 0.045 3.955 10 N -0.579 5.579 11 C 0.513 3.487 12 O -0.506 6.506 13 C 0.499 3.501 14 O -0.540 6.540 15 N -0.579 5.579 16 C 0.120 3.880 17 C -0.117 4.117 18 C 0.233 3.767 19 O -0.588 6.588 20 C -0.557 4.557 21 H 0.067 0.933 22 C 0.032 3.968 23 N -0.911 5.911 24 Si 0.960 3.040 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.270 1.270 28 C 0.109 3.891 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.123 0.877 33 H 0.102 0.898 34 H 0.408 0.592 35 H 0.126 0.874 36 H 0.079 0.921 37 H 0.143 0.857 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.374 0.626 44 H 0.270 0.730 45 H 0.063 0.937 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.618 5.238 13.772 14.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.049 3.951 3 H 0.102 0.898 4 C -0.187 4.187 5 C 0.304 3.696 6 O -0.475 6.475 7 N -0.364 5.364 8 C -0.019 4.019 9 C -0.077 4.077 10 N -0.313 5.313 11 C 0.295 3.705 12 O -0.382 6.382 13 C 0.284 3.716 14 O -0.421 6.421 15 N -0.310 5.310 16 C -0.002 4.002 17 C -0.155 4.155 18 C 0.192 3.808 19 O -0.396 6.396 20 C -0.595 4.595 21 H 0.085 0.915 22 C -0.170 4.170 23 N -0.550 5.550 24 Si 0.786 3.214 25 H -0.199 1.199 26 H -0.211 1.211 27 H -0.195 1.195 28 C -0.013 4.013 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.141 0.859 33 H 0.121 0.879 34 H 0.246 0.754 35 H 0.144 0.856 36 H 0.097 0.903 37 H 0.159 0.841 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.223 0.777 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.183 5.757 14.501 15.647 hybrid contribution 1.208 -0.968 -1.044 1.867 sum 2.392 4.789 13.457 14.483 Atomic orbital electron populations 1.22228 0.90904 1.03488 1.02017 1.21190 0.96958 0.95417 0.81501 0.89777 1.22500 0.92520 1.03277 1.00406 1.20806 0.88928 0.78932 0.80936 1.90739 1.85098 1.39416 1.32203 1.46029 1.10875 1.50168 1.29335 1.22017 1.03113 0.91878 0.84940 1.23181 0.78121 1.02754 1.03680 1.47726 1.07478 1.53146 1.22930 1.19974 0.86332 0.81397 0.82757 1.90836 1.17475 1.60407 1.69480 1.20376 0.85268 0.83151 0.82847 1.90419 1.17264 1.59949 1.74468 1.48738 1.11164 1.43549 1.27580 1.22153 0.79116 0.99925 0.99043 1.22718 0.97428 1.01012 0.94333 1.19842 0.89709 0.84272 0.86941 1.86131 1.46138 1.42607 1.64674 1.21722 0.98031 1.12691 1.27033 0.91505 1.25733 0.94654 0.99478 0.97117 1.69789 1.02280 1.41805 1.41141 0.85569 0.77335 0.79641 0.78842 1.19926 1.21072 1.19507 1.23004 1.01539 0.90622 0.86141 0.91727 0.91345 0.91420 0.85896 0.87921 0.75441 0.85605 0.90285 0.84064 0.89930 0.89410 0.91326 0.89981 0.89148 0.77693 0.92029 0.91898 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 7.47 71.98 0.54 -1.99 16 2 C 0.15 2.90 3.21 45.16 0.14 3.04 16 3 H 0.08 1.59 7.95 -2.39 -0.02 1.57 16 4 C -0.15 -2.52 4.99 30.10 0.15 -2.37 16 5 C 0.52 10.80 7.11 87.99 0.63 11.42 16 6 O -0.59 -17.12 17.91 -3.04 -0.05 -17.18 16 7 N -0.71 -11.34 5.30 -463.72 -2.46 -13.79 16 8 C 0.10 1.59 6.46 86.18 0.56 2.15 16 9 C 0.04 0.88 5.63 86.34 0.49 1.36 16 10 N -0.58 -12.90 2.78 -801.41 -2.23 -15.13 16 11 C 0.51 14.46 7.41 87.27 0.65 15.11 16 12 O -0.51 -14.79 9.30 -3.28 -0.03 -14.82 16 13 C 0.50 17.08 7.70 87.27 0.67 17.75 16 14 O -0.54 -19.23 13.42 -3.24 -0.04 -19.27 16 15 N -0.58 -21.82 3.33 -813.37 -2.71 -24.53 16 16 C 0.12 4.06 5.50 86.73 0.48 4.54 16 17 C -0.12 -4.36 6.13 31.79 0.19 -4.16 16 18 C 0.23 10.62 0.87 -10.16 -0.01 10.61 16 19 O -0.59 -28.67 13.16 -148.98 -1.96 -30.63 16 20 C -0.56 -27.50 8.27 25.60 0.21 -27.29 16 21 H 0.07 3.22 7.79 -2.91 -0.02 3.20 16 22 C 0.03 1.57 5.29 84.66 0.45 2.01 16 23 N -0.91 -46.33 10.69 21.45 0.23 -46.10 16 24 Si 0.96 39.75 29.54 68.60 2.03 41.78 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 26 H -0.29 -11.71 7.11 99.48 0.71 -11.00 16 27 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 28 C 0.11 4.83 5.38 86.85 0.47 5.30 16 29 H 0.06 1.42 6.57 -2.39 -0.02 1.41 16 30 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 31 H 0.07 1.57 6.66 -2.39 -0.02 1.55 16 32 H 0.12 1.88 7.95 -2.39 -0.02 1.86 16 33 H 0.10 1.65 7.08 -2.39 -0.02 1.63 16 34 H 0.41 5.45 8.91 -92.71 -0.83 4.62 16 35 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.08 1.30 7.04 -2.39 -0.02 1.28 16 37 H 0.14 3.54 4.17 -60.06 -0.25 3.29 16 38 H 0.08 1.45 8.10 -2.39 -0.02 1.43 16 39 H 0.09 2.64 7.57 -2.39 -0.02 2.62 16 40 H 0.07 2.34 7.72 -2.39 -0.02 2.32 16 41 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 42 H 0.09 3.11 8.03 -2.39 -0.02 3.09 16 43 H 0.37 18.88 7.57 -74.05 -0.56 18.32 16 44 H 0.27 13.25 8.31 -92.71 -0.77 12.48 16 45 H 0.06 3.13 7.33 -2.39 -0.02 3.12 16 46 H 0.06 2.56 8.03 -2.39 -0.02 2.54 16 Total: -1.00 -60.05 359.31 -2.20 -62.24 By element: Atomic # 1 Polarization: 40.52 SS G_CDS: -0.58 Total: 39.94 kcal Atomic # 6 Polarization: 31.89 SS G_CDS: 5.61 Total: 37.50 kcal Atomic # 7 Polarization: -92.39 SS G_CDS: -7.16 Total: -99.55 kcal Atomic # 8 Polarization: -79.81 SS G_CDS: -2.09 Total: -81.90 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Total: -60.05 -2.20 -62.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326215214.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.120 kcal (2) G-P(sol) polarization free energy of solvation -60.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds