Wall clock time and date at job start Wed Apr 1 2020 00:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46180 * 2 1 4 4 C 1.53311 * 109.46519 * 240.02617 * 2 1 3 5 5 C 1.51192 * 108.61723 * 320.07362 * 4 2 1 6 6 O 1.21279 * 119.77096 * 108.75477 * 5 4 2 7 7 N 1.33634 * 120.45655 * 288.72989 * 5 4 2 8 8 C 1.46914 * 120.62968 * 359.74949 * 7 5 4 9 9 C 1.52714 * 108.93156 * 71.84515 * 8 7 5 10 10 N 1.46078 * 109.99464 * 278.58740 * 9 8 7 11 11 C 1.34777 * 118.72994 * 243.81843 * 10 9 8 12 12 O 1.21351 * 120.00060 * 191.72516 * 11 10 9 13 13 C 1.49448 * 119.99839 * 11.72461 * 11 10 9 14 14 O 1.21344 * 120.00500 * 7.28210 * 13 11 10 15 15 N 1.34781 * 119.99679 * 187.28254 * 13 11 10 16 16 C 1.47428 * 125.65148 * 0.02562 * 15 13 11 17 17 C 1.54907 * 104.92704 * 204.15655 * 16 15 13 18 18 C 1.55154 * 101.58694 * 322.93680 * 17 16 15 19 19 O 1.42904 * 110.71637 * 277.14225 * 18 17 16 20 20 C 1.50695 * 110.72319 * 153.86500 * 18 17 16 21 21 H 1.07998 * 119.99734 * 0.02562 * 20 18 17 22 22 C 1.37870 * 120.00310 * 179.97438 * 20 18 17 23 23 N 1.31521 * 119.99753 * 0.02562 * 22 20 18 24 24 Si 1.86798 * 120.00259 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47029 * 60.00225 * 24 22 20 26 26 H 1.48507 * 109.47197 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47309 * 299.99983 * 24 22 20 28 28 C 1.47294 * 125.78936 * 180.02562 * 15 13 11 29 29 H 1.08995 * 109.47441 * 300.02491 * 1 2 3 30 30 H 1.09000 * 109.46502 * 60.02466 * 1 2 3 31 31 H 1.08994 * 109.46844 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.60976 * 79.81646 * 4 2 1 33 33 H 1.09004 * 109.60729 * 200.33514 * 4 2 1 34 34 H 0.97001 * 119.67911 * 179.72631 * 7 5 4 35 35 H 1.09007 * 109.57828 * 191.74789 * 8 7 5 36 36 H 1.09003 * 109.57698 * 312.01007 * 8 7 5 37 37 H 1.09000 * 109.30463 * 158.42139 * 9 8 7 38 38 H 1.09000 * 109.27737 * 38.73491 * 9 8 7 39 39 H 1.08994 * 110.36251 * 85.26398 * 16 15 13 40 40 H 1.08994 * 110.36346 * 323.05312 * 16 15 13 41 41 H 1.09001 * 111.00347 * 81.01559 * 17 16 15 42 42 H 1.09001 * 111.00141 * 204.82007 * 17 16 15 43 43 H 0.96707 * 113.99843 * 179.97438 * 19 18 17 44 44 H 0.96998 * 119.99981 * 180.02562 * 23 22 20 45 45 H 1.08997 * 109.85917 * 59.50091 * 28 15 13 46 46 H 1.08994 * 110.00278 * 298.42242 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0409 -0.7222 -1.2522 5 6 1.1658 -1.9291 -1.5041 6 8 0.3990 -1.9313 -2.4438 7 7 1.2317 -2.9935 -0.6989 8 6 2.1580 -3.0134 0.4412 9 6 1.6396 -2.0620 1.5175 10 7 2.0170 -0.6885 1.1938 11 6 2.8506 -0.0326 2.0253 12 8 3.0127 1.1638 1.9026 13 6 3.5755 -0.7788 3.0982 14 8 3.5183 -1.9902 3.1397 15 7 4.2928 -0.1061 4.0200 16 6 4.4467 1.3585 4.0878 17 6 5.7754 1.5851 4.8513 18 6 5.7311 0.4424 5.8999 19 8 4.9449 0.8241 7.0305 20 6 7.1239 0.0534 6.3238 21 1 7.9785 0.5595 5.8997 22 6 7.3071 -0.9477 7.2538 23 7 6.2663 -1.5637 7.7706 24 14 9.0335 -1.4294 7.7799 25 1 9.7143 -0.2539 8.3796 26 1 8.9587 -2.5231 8.7817 27 1 9.8000 -1.8948 6.5962 28 6 5.0537 -0.7093 5.1276 29 1 -0.3634 0.5142 0.8897 30 1 -0.3632 0.5135 -0.8902 31 1 -0.3633 -1.0276 0.0005 32 1 1.9917 -0.0493 -2.1083 33 1 3.0706 -1.0433 -1.0947 34 1 0.6622 -3.7602 -0.8687 35 1 2.2188 -4.0241 0.8449 36 1 3.1465 -2.6906 0.1144 37 1 2.0691 -2.3388 2.4803 38 1 0.5534 -2.1366 1.5708 39 1 3.6147 1.8025 4.6343 40 1 4.5089 1.7802 3.0846 41 1 6.6320 1.4726 4.1867 42 1 5.7857 2.5612 5.3364 43 1 4.8850 0.1441 7.7155 44 1 6.3951 -2.2678 8.4252 45 1 5.8110 -1.3857 4.7314 46 1 4.3803 -1.2537 5.7895 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326215215.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:32 Heat of formation + Delta-G solvation = -118.798022 kcal Electronic energy + Delta-G solvation = -31271.904131 eV Core-core repulsion = 26969.842877 eV Total energy + Delta-G solvation = -4302.061254 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.35084 -40.02877 -38.61829 -37.56886 -36.82654 -34.99140 -34.42119 -32.75537 -32.25858 -30.30273 -28.87780 -28.24518 -28.04759 -26.07059 -24.46660 -24.11866 -22.48291 -21.04529 -19.92206 -19.60371 -19.19247 -17.55667 -17.34182 -17.25799 -16.87871 -16.48749 -16.10891 -15.77184 -15.54350 -15.14193 -14.81613 -14.57419 -14.29590 -14.05452 -13.38431 -13.27741 -13.09893 -13.04656 -12.90035 -12.86372 -12.63518 -12.48957 -12.37181 -12.05181 -11.86822 -11.76918 -11.54384 -11.38303 -11.14447 -10.99421 -10.75977 -10.60134 -10.53206 -10.24250 -10.01687 -9.66932 -9.40781 -8.95408 -8.90016 -8.73166 -8.43350 -8.14703 -6.38881 -4.47518 1.54755 2.33914 2.39412 3.04928 3.16695 3.22579 3.24700 3.34386 3.52707 4.15105 4.19490 4.38656 4.52818 4.67947 4.83500 4.87011 4.89513 4.91924 5.04139 5.16830 5.37647 5.40044 5.48142 5.61383 5.67809 5.74823 5.78363 5.82597 5.91394 5.95882 6.15108 6.30191 6.41390 6.52294 6.67808 6.69099 6.73672 6.93099 6.98655 7.10139 7.22310 7.63291 7.64761 7.87771 7.91461 7.97623 8.23605 8.56031 9.21756 9.34363 10.68855 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022599 B = 0.002867 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.674590 B = 9764.771309 C =10375.587534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 H 0.118 0.882 4 C -0.153 4.153 5 C 0.524 3.476 6 O -0.554 6.554 7 N -0.727 5.727 8 C 0.099 3.901 9 C 0.041 3.959 10 N -0.586 5.586 11 C 0.511 3.489 12 O -0.511 6.511 13 C 0.507 3.493 14 O -0.529 6.529 15 N -0.568 5.568 16 C 0.093 3.907 17 C -0.120 4.120 18 C 0.249 3.751 19 O -0.584 6.584 20 C -0.538 4.538 21 H 0.068 0.932 22 C 0.071 3.929 23 N -0.897 5.897 24 Si 0.906 3.094 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.097 3.903 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.400 0.600 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.164 0.836 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.386 0.614 44 H 0.272 0.728 45 H 0.074 0.926 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.302 -0.845 -12.189 14.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.136 0.864 4 C -0.194 4.194 5 C 0.310 3.690 6 O -0.432 6.432 7 N -0.380 5.380 8 C -0.026 4.026 9 C -0.081 4.081 10 N -0.320 5.320 11 C 0.294 3.706 12 O -0.386 6.386 13 C 0.290 3.710 14 O -0.411 6.411 15 N -0.298 5.298 16 C -0.029 4.029 17 C -0.158 4.158 18 C 0.208 3.792 19 O -0.394 6.394 20 C -0.576 4.576 21 H 0.086 0.914 22 C -0.132 4.132 23 N -0.536 5.536 24 Si 0.733 3.267 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.200 1.200 28 C -0.024 4.024 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.128 0.872 33 H 0.113 0.887 34 H 0.236 0.764 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.180 0.820 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.238 0.762 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.663 -0.275 -12.924 15.562 hybrid contribution 0.697 -1.377 0.575 1.647 sum -7.966 -1.652 -12.349 14.788 Atomic orbital electron populations 1.22190 0.93968 1.02804 1.03219 1.21047 0.95031 0.97945 0.82194 0.86450 1.22478 1.00410 0.96163 1.00350 1.20416 0.82986 0.84321 0.81233 1.90749 1.40000 1.81928 1.30511 1.46098 1.42805 1.18979 1.30101 1.22032 0.93089 1.01697 0.85801 1.23274 1.01260 0.79504 1.04094 1.47776 1.45928 1.14977 1.23342 1.20501 0.79851 0.87239 0.82989 1.90685 1.62672 1.14023 1.71219 1.19573 0.81584 0.87151 0.82702 1.90380 1.62608 1.13415 1.74695 1.48829 1.44951 1.09517 1.26516 1.22736 0.98975 0.79275 1.01926 1.22825 0.95291 1.00396 0.97327 1.19482 0.89058 0.87430 0.83230 1.86104 1.73672 1.47322 1.32327 1.21495 0.91891 1.19449 1.24746 0.91380 1.25078 0.97944 0.95006 0.95204 1.69555 1.29791 1.24846 1.29455 0.86423 0.83585 0.78213 0.78497 1.19926 1.21036 1.19984 1.23386 0.94205 0.98881 0.85946 0.91504 0.90665 0.92123 0.87161 0.88660 0.76420 0.87945 0.90126 0.82018 0.91142 0.91298 0.89027 0.90456 0.90217 0.76181 0.91761 0.90783 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 8.43 37.16 0.31 -1.28 16 2 C 0.14 1.46 3.11 -67.95 -0.21 1.25 16 3 H 0.12 1.28 6.82 -51.93 -0.35 0.92 16 4 C -0.15 -1.46 5.38 -27.48 -0.15 -1.61 16 5 C 0.52 5.77 5.07 -11.25 -0.06 5.71 16 6 O -0.55 -8.02 17.91 5.56 0.10 -7.93 16 7 N -0.73 -6.39 5.23 -60.26 -0.32 -6.70 16 8 C 0.10 0.84 6.47 -3.96 -0.03 0.82 16 9 C 0.04 0.43 5.23 -4.42 -0.02 0.40 16 10 N -0.59 -6.93 2.53 -167.18 -0.42 -7.36 16 11 C 0.51 7.60 7.59 -11.59 -0.09 7.52 16 12 O -0.51 -8.26 13.03 5.50 0.07 -8.19 16 13 C 0.51 8.77 7.71 -11.58 -0.09 8.68 16 14 O -0.53 -9.37 13.48 5.50 0.07 -9.29 16 15 N -0.57 -10.84 3.34 -170.81 -0.57 -11.41 16 16 C 0.09 1.66 6.17 -2.53 -0.02 1.65 16 17 C -0.12 -2.33 6.22 -24.59 -0.15 -2.48 16 18 C 0.25 5.69 0.86 -89.94 -0.08 5.61 16 19 O -0.58 -14.09 13.09 -35.23 -0.46 -14.55 16 20 C -0.54 -13.32 8.11 -34.45 -0.28 -13.60 16 21 H 0.07 1.66 7.76 -52.49 -0.41 1.25 16 22 C 0.07 1.75 5.28 -17.82 -0.09 1.65 16 23 N -0.90 -22.50 10.98 55.43 0.61 -21.90 16 24 Si 0.91 19.51 29.54 -169.99 -5.02 14.49 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 28 C 0.10 2.13 5.56 -2.91 -0.02 2.11 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.62 5.77 -51.93 -0.30 0.32 16 32 H 0.11 0.95 8.13 -51.93 -0.42 0.52 16 33 H 0.10 0.87 7.08 -51.93 -0.37 0.51 16 34 H 0.40 3.00 8.91 -40.82 -0.36 2.64 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.75 7.04 -51.93 -0.37 0.38 16 37 H 0.16 2.05 4.11 -55.87 -0.23 1.82 16 38 H 0.07 0.67 7.14 -51.93 -0.37 0.30 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.09 1.54 5.98 -51.93 -0.31 1.23 16 41 H 0.08 1.43 8.02 -51.93 -0.42 1.01 16 42 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 43 H 0.39 9.55 6.98 45.56 0.32 9.87 16 44 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 45 H 0.07 1.74 7.81 -51.93 -0.41 1.34 16 46 H 0.07 1.71 8.07 -51.93 -0.42 1.30 16 LS Contribution 360.26 15.07 5.43 5.43 Total: -1.00 -28.26 360.26 -7.13 -35.40 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -5.66 Total: 15.58 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: -0.96 Total: 16.43 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.70 Total: -47.36 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -0.22 Total: -39.96 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.26 -7.13 -35.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326215215.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.402 kcal (2) G-P(sol) polarization free energy of solvation -28.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds