Wall clock time and date at job start Wed Apr 1 2020 00:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46180 * 2 1 4 4 C 1.53311 * 109.46519 * 240.02617 * 2 1 3 5 5 C 1.51192 * 108.61723 * 320.07362 * 4 2 1 6 6 O 1.21279 * 119.77096 * 108.75477 * 5 4 2 7 7 N 1.33634 * 120.45655 * 288.72989 * 5 4 2 8 8 C 1.46914 * 120.62968 * 359.74949 * 7 5 4 9 9 C 1.52714 * 108.93156 * 71.84515 * 8 7 5 10 10 N 1.46078 * 109.99464 * 278.58740 * 9 8 7 11 11 C 1.34777 * 118.72994 * 243.81843 * 10 9 8 12 12 O 1.21351 * 120.00060 * 191.72516 * 11 10 9 13 13 C 1.49448 * 119.99839 * 11.72461 * 11 10 9 14 14 O 1.21344 * 120.00500 * 7.28210 * 13 11 10 15 15 N 1.34781 * 119.99679 * 187.28254 * 13 11 10 16 16 C 1.47428 * 125.65148 * 0.02562 * 15 13 11 17 17 C 1.54907 * 104.92704 * 204.15655 * 16 15 13 18 18 C 1.55154 * 101.58694 * 322.93680 * 17 16 15 19 19 O 1.42904 * 110.71637 * 277.14225 * 18 17 16 20 20 C 1.50695 * 110.72319 * 153.86500 * 18 17 16 21 21 H 1.07998 * 119.99734 * 0.02562 * 20 18 17 22 22 C 1.37870 * 120.00310 * 179.97438 * 20 18 17 23 23 N 1.31521 * 119.99753 * 0.02562 * 22 20 18 24 24 Si 1.86798 * 120.00259 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47029 * 60.00225 * 24 22 20 26 26 H 1.48507 * 109.47197 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47309 * 299.99983 * 24 22 20 28 28 C 1.47294 * 125.78936 * 180.02562 * 15 13 11 29 29 H 1.08995 * 109.47441 * 300.02491 * 1 2 3 30 30 H 1.09000 * 109.46502 * 60.02466 * 1 2 3 31 31 H 1.08994 * 109.46844 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.60976 * 79.81646 * 4 2 1 33 33 H 1.09004 * 109.60729 * 200.33514 * 4 2 1 34 34 H 0.97001 * 119.67911 * 179.72631 * 7 5 4 35 35 H 1.09007 * 109.57828 * 191.74789 * 8 7 5 36 36 H 1.09003 * 109.57698 * 312.01007 * 8 7 5 37 37 H 1.09000 * 109.30463 * 158.42139 * 9 8 7 38 38 H 1.09000 * 109.27737 * 38.73491 * 9 8 7 39 39 H 1.08994 * 110.36251 * 85.26398 * 16 15 13 40 40 H 1.08994 * 110.36346 * 323.05312 * 16 15 13 41 41 H 1.09001 * 111.00347 * 81.01559 * 17 16 15 42 42 H 1.09001 * 111.00141 * 204.82007 * 17 16 15 43 43 H 0.96707 * 113.99843 * 179.97438 * 19 18 17 44 44 H 0.96998 * 119.99981 * 180.02562 * 23 22 20 45 45 H 1.08997 * 109.85917 * 59.50091 * 28 15 13 46 46 H 1.08994 * 110.00278 * 298.42242 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0409 -0.7222 -1.2522 5 6 1.1658 -1.9291 -1.5041 6 8 0.3990 -1.9313 -2.4438 7 7 1.2317 -2.9935 -0.6989 8 6 2.1580 -3.0134 0.4412 9 6 1.6396 -2.0620 1.5175 10 7 2.0170 -0.6885 1.1938 11 6 2.8506 -0.0326 2.0253 12 8 3.0127 1.1638 1.9026 13 6 3.5755 -0.7788 3.0982 14 8 3.5183 -1.9902 3.1397 15 7 4.2928 -0.1061 4.0200 16 6 4.4467 1.3585 4.0878 17 6 5.7754 1.5851 4.8513 18 6 5.7311 0.4424 5.8999 19 8 4.9449 0.8241 7.0305 20 6 7.1239 0.0534 6.3238 21 1 7.9785 0.5595 5.8997 22 6 7.3071 -0.9477 7.2538 23 7 6.2663 -1.5637 7.7706 24 14 9.0335 -1.4294 7.7799 25 1 9.7143 -0.2539 8.3796 26 1 8.9587 -2.5231 8.7817 27 1 9.8000 -1.8948 6.5962 28 6 5.0537 -0.7093 5.1276 29 1 -0.3634 0.5142 0.8897 30 1 -0.3632 0.5135 -0.8902 31 1 -0.3633 -1.0276 0.0005 32 1 1.9917 -0.0493 -2.1083 33 1 3.0706 -1.0433 -1.0947 34 1 0.6622 -3.7602 -0.8687 35 1 2.2188 -4.0241 0.8449 36 1 3.1465 -2.6906 0.1144 37 1 2.0691 -2.3388 2.4803 38 1 0.5534 -2.1366 1.5708 39 1 3.6147 1.8025 4.6343 40 1 4.5089 1.7802 3.0846 41 1 6.6320 1.4726 4.1867 42 1 5.7857 2.5612 5.3364 43 1 4.8850 0.1441 7.7155 44 1 6.3951 -2.2678 8.4252 45 1 5.8110 -1.3857 4.7314 46 1 4.3803 -1.2537 5.7895 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326215215.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:31 Heat of formation + Delta-G solvation = -140.925496 kcal Electronic energy + Delta-G solvation = -31272.863651 eV Core-core repulsion = 26969.842877 eV Total energy + Delta-G solvation = -4303.020774 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.44282 -41.15919 -39.95439 -39.02695 -37.93867 -36.16465 -35.75389 -34.16242 -33.71367 -31.89390 -29.78805 -29.73656 -29.01972 -27.68414 -25.74242 -25.18939 -23.87488 -22.08409 -21.40808 -20.85538 -20.23668 -19.15127 -18.63974 -18.36219 -17.97154 -17.58619 -17.28472 -17.12557 -16.83797 -16.55070 -16.19647 -15.90723 -15.55391 -15.05944 -14.77896 -14.76743 -14.64001 -14.22155 -14.07653 -13.90445 -13.86451 -13.49025 -13.43540 -13.40448 -13.17686 -12.89102 -12.82555 -12.69565 -12.57853 -12.32862 -12.29775 -12.20635 -12.15149 -11.80796 -11.16206 -10.92988 -10.68627 -10.58018 -10.34847 -10.10821 -9.87847 -9.62721 -8.26164 -6.41368 0.26796 1.14974 1.45715 1.47162 1.52169 1.54219 2.04295 2.24705 2.31608 2.40858 2.99444 3.04797 3.39919 3.69553 3.81158 3.86727 4.00825 4.07665 4.08623 4.13746 4.17919 4.26122 4.37082 4.41002 4.60136 4.63193 4.65854 4.75577 4.82082 4.89170 4.93863 5.00065 5.10311 5.11734 5.15121 5.34559 5.35473 5.47099 5.75416 5.77323 5.88725 6.03516 6.17479 6.33097 6.56408 6.66535 6.86331 7.16467 7.30560 7.40781 8.79916 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022599 B = 0.002867 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.674590 B = 9764.771309 C =10375.587534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.142 3.858 3 H 0.117 0.883 4 C -0.148 4.148 5 C 0.523 3.477 6 O -0.590 6.590 7 N -0.715 5.715 8 C 0.104 3.896 9 C 0.040 3.960 10 N -0.573 5.573 11 C 0.517 3.483 12 O -0.524 6.524 13 C 0.504 3.496 14 O -0.535 6.535 15 N -0.580 5.580 16 C 0.104 3.896 17 C -0.115 4.115 18 C 0.233 3.767 19 O -0.590 6.590 20 C -0.558 4.558 21 H 0.067 0.933 22 C 0.030 3.970 23 N -0.914 5.914 24 Si 0.962 3.038 25 H -0.272 1.272 26 H -0.284 1.284 27 H -0.272 1.272 28 C 0.117 3.883 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.123 0.877 33 H 0.102 0.898 34 H 0.408 0.592 35 H 0.126 0.874 36 H 0.078 0.922 37 H 0.145 0.855 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.380 0.620 44 H 0.273 0.727 45 H 0.052 0.948 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.397 -0.885 -13.482 15.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.040 3.960 3 H 0.135 0.865 4 C -0.188 4.188 5 C 0.311 3.689 6 O -0.471 6.471 7 N -0.367 5.367 8 C -0.020 4.020 9 C -0.082 4.082 10 N -0.307 5.307 11 C 0.300 3.700 12 O -0.401 6.401 13 C 0.289 3.711 14 O -0.416 6.416 15 N -0.311 5.311 16 C -0.017 4.017 17 C -0.153 4.153 18 C 0.193 3.807 19 O -0.399 6.399 20 C -0.596 4.596 21 H 0.085 0.915 22 C -0.171 4.171 23 N -0.554 5.554 24 Si 0.788 3.212 25 H -0.197 1.197 26 H -0.209 1.209 27 H -0.197 1.197 28 C -0.006 4.006 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.141 0.859 33 H 0.120 0.880 34 H 0.245 0.755 35 H 0.144 0.856 36 H 0.096 0.904 37 H 0.161 0.839 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.126 0.874 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.231 0.769 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.782 -0.345 -14.239 16.733 hybrid contribution 0.658 -1.435 0.956 1.845 sum -8.124 -1.780 -13.283 15.672 Atomic orbital electron populations 1.22140 0.93231 1.02609 1.03603 1.21171 0.95483 0.97829 0.81557 0.86482 1.22464 1.00350 0.95811 1.00222 1.20630 0.82559 0.84930 0.80831 1.90741 1.41583 1.82670 1.32118 1.46024 1.42464 1.18754 1.29416 1.22023 0.92543 1.02431 0.85010 1.23254 1.02017 0.79087 1.03806 1.47839 1.44457 1.15379 1.22989 1.19961 0.80387 0.86886 0.82791 1.90677 1.63558 1.14283 1.71553 1.20116 0.81055 0.87278 0.82692 1.90407 1.62429 1.13896 1.74860 1.48805 1.45770 1.09881 1.26642 1.22684 0.97970 0.78592 1.02497 1.22819 0.96531 0.99454 0.96511 1.19694 0.88304 0.89214 0.83514 1.86095 1.73970 1.47205 1.32661 1.21790 0.92830 1.19770 1.25183 0.91484 1.25747 1.01007 0.95019 0.95316 1.69644 1.31135 1.24997 1.29632 0.85539 0.79864 0.77786 0.78043 1.19736 1.20893 1.19691 1.22838 0.93257 0.98092 0.86391 0.91589 0.89847 0.92545 0.85904 0.87982 0.75470 0.85605 0.90383 0.83868 0.89767 0.91494 0.87389 0.89646 0.89426 0.76939 0.91796 0.92990 0.93525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 8.43 71.98 0.61 -2.14 16 2 C 0.14 2.63 3.11 45.16 0.14 2.77 16 3 H 0.12 2.28 6.82 -2.38 -0.02 2.26 16 4 C -0.15 -2.48 5.38 30.11 0.16 -2.32 16 5 C 0.52 10.44 5.07 87.99 0.45 10.88 16 6 O -0.59 -16.18 17.91 -3.03 -0.05 -16.23 16 7 N -0.71 -10.86 5.23 -463.58 -2.42 -13.28 16 8 C 0.10 1.53 6.47 86.21 0.56 2.09 16 9 C 0.04 0.76 5.23 86.36 0.45 1.21 16 10 N -0.57 -12.48 2.53 -801.21 -2.03 -14.51 16 11 C 0.52 14.64 7.59 87.27 0.66 15.30 16 12 O -0.52 -16.04 13.03 -3.25 -0.04 -16.09 16 13 C 0.50 17.15 7.71 87.27 0.67 17.82 16 14 O -0.53 -18.70 13.48 -3.23 -0.04 -18.75 16 15 N -0.58 -22.06 3.34 -812.69 -2.71 -24.78 16 16 C 0.10 3.64 6.17 86.85 0.54 4.17 16 17 C -0.12 -4.38 6.22 31.98 0.20 -4.19 16 18 C 0.23 10.78 0.86 -10.35 -0.01 10.77 16 19 O -0.59 -28.94 13.09 -148.98 -1.95 -30.89 16 20 C -0.56 -27.84 8.11 25.60 0.21 -27.63 16 21 H 0.07 3.27 7.76 -2.91 -0.02 3.25 16 22 C 0.03 1.50 5.28 84.65 0.45 1.94 16 23 N -0.91 -46.61 10.98 21.45 0.24 -46.37 16 24 Si 0.96 39.96 29.54 68.60 2.03 41.98 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 28 C 0.12 5.25 5.56 86.68 0.48 5.73 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.03 5.77 -2.39 -0.01 1.02 16 32 H 0.12 1.81 8.13 -2.39 -0.02 1.79 16 33 H 0.10 1.61 7.08 -2.38 -0.02 1.59 16 34 H 0.41 5.16 8.91 -92.71 -0.83 4.33 16 35 H 0.13 1.33 8.14 -2.38 -0.02 1.32 16 36 H 0.08 1.26 7.04 -2.39 -0.02 1.24 16 37 H 0.14 3.44 4.11 -64.78 -0.27 3.17 16 38 H 0.08 1.41 7.14 -2.39 -0.02 1.40 16 39 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.11 3.44 5.98 -2.39 -0.01 3.43 16 41 H 0.08 3.08 8.02 -2.39 -0.02 3.06 16 42 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 43 H 0.38 19.34 6.98 -74.05 -0.52 18.82 16 44 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 45 H 0.05 2.52 7.81 -2.39 -0.02 2.50 16 46 H 0.05 2.30 8.07 -2.39 -0.02 2.28 16 Total: -1.00 -60.28 360.26 -1.98 -62.27 By element: Atomic # 1 Polarization: 40.77 SS G_CDS: -0.55 Total: 40.22 kcal Atomic # 6 Polarization: 30.87 SS G_CDS: 5.56 Total: 36.43 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -6.93 Total: -98.94 kcal Atomic # 8 Polarization: -79.86 SS G_CDS: -2.09 Total: -81.95 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.98 kcal Total: -60.28 -1.98 -62.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326215215.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.659 kcal (2) G-P(sol) polarization free energy of solvation -60.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds