Wall clock time and date at job start Wed Apr 1 2020 00:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.45692 * 2 1 4 4 C 1.52821 * 109.33565 * 240.29085 * 2 1 3 5 5 C 1.51191 * 108.68664 * 159.97706 * 4 2 1 6 6 O 1.21279 * 119.76638 * 251.18046 * 5 4 2 7 7 N 1.33628 * 120.46207 * 71.20558 * 5 4 2 8 8 C 1.46923 * 120.62474 * 0.24084 * 7 5 4 9 9 C 1.53221 * 108.81902 * 288.06321 * 8 7 5 10 10 N 1.46068 * 109.72019 * 81.59795 * 9 8 7 11 11 C 1.34781 * 118.73442 * 116.16098 * 10 9 8 12 12 O 1.21342 * 120.00495 * 190.73809 * 11 10 9 13 13 C 1.49453 * 119.99580 * 10.74012 * 11 10 9 14 14 O 1.21350 * 120.00198 * 6.72923 * 13 11 10 15 15 N 1.34777 * 119.99932 * 186.73302 * 13 11 10 16 16 C 1.47745 * 125.82094 * 359.90448 * 15 13 11 17 17 C 1.54911 * 104.83841 * 155.82948 * 16 15 13 18 18 C 1.55157 * 101.58297 * 37.09654 * 17 16 15 19 19 O 1.42900 * 110.87284 * 82.92950 * 18 17 16 20 20 C 1.50704 * 110.72206 * 206.13416 * 18 17 16 21 21 H 1.07994 * 120.00386 * 118.67557 * 20 18 17 22 22 C 1.37882 * 119.99417 * 298.67580 * 20 18 17 23 23 N 1.31518 * 119.99518 * 185.67346 * 22 20 18 24 24 Si 1.86792 * 120.00292 * 5.67161 * 22 20 18 25 25 H 1.48498 * 109.47152 * 85.56181 * 24 22 20 26 26 H 1.48506 * 109.46903 * 205.55682 * 24 22 20 27 27 H 1.48498 * 109.47304 * 325.55752 * 24 22 20 28 28 C 1.47027 * 125.64907 * 180.02562 * 15 13 11 29 29 H 1.08997 * 109.47320 * 279.30899 * 1 2 3 30 30 H 1.09001 * 109.46872 * 39.30967 * 1 2 3 31 31 H 1.09000 * 109.46903 * 159.31049 * 1 2 3 32 32 H 1.08999 * 109.63809 * 40.17882 * 4 2 1 33 33 H 1.08999 * 109.65533 * 279.78770 * 4 2 1 34 34 H 0.97003 * 119.68916 * 180.26064 * 7 5 4 35 35 H 1.09003 * 109.57491 * 168.26400 * 8 7 5 36 36 H 1.08996 * 109.57832 * 47.86375 * 8 7 5 37 37 H 1.08996 * 109.43289 * 321.52247 * 9 8 7 38 38 H 1.08999 * 109.38801 * 201.64740 * 9 8 7 39 39 H 1.09002 * 110.29410 * 37.02988 * 16 15 13 40 40 H 1.08992 * 110.43259 * 274.70754 * 16 15 13 41 41 H 1.09000 * 111.01185 * 279.02166 * 17 16 15 42 42 H 1.09003 * 111.00090 * 155.16803 * 17 16 15 43 43 H 0.96702 * 113.99710 * 184.93541 * 19 18 17 44 44 H 0.96997 * 119.99792 * 180.02562 * 23 22 20 45 45 H 1.08998 * 109.88307 * 61.60354 * 28 15 13 46 46 H 1.09001 * 109.87991 * 300.59536 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0360 -0.7147 -1.2525 5 6 3.4661 -0.2945 -1.5055 6 8 3.7237 0.4305 -2.4430 7 7 4.4482 -0.7167 -0.7037 8 6 4.1581 -1.6000 0.4339 9 6 3.4378 -0.7904 1.5172 10 7 2.0171 -0.6886 1.1936 11 6 1.1209 -1.2563 2.0250 12 8 -0.0402 -1.3583 1.6875 13 6 1.5573 -1.7601 3.3627 14 8 2.6876 -1.5500 3.7510 15 7 0.6954 -2.4479 4.1377 16 6 -0.7043 -2.7741 3.7953 17 6 -1.0379 -4.0278 4.6419 18 6 -0.2783 -3.7245 5.9604 19 8 -1.0510 -2.8732 6.8090 20 6 0.0811 -5.0020 6.6746 21 1 1.1175 -5.2479 6.8528 22 6 -0.9133 -5.8569 7.1005 23 7 -0.6077 -6.9142 7.8204 24 14 -2.6945 -5.5132 6.6550 25 1 -2.9892 -6.0851 5.3166 26 1 -3.5865 -6.1353 7.6663 27 1 -2.9239 -4.0463 6.6280 28 6 0.9912 -2.9978 5.4688 29 1 -0.3634 0.1662 1.0141 30 1 -0.3633 0.7952 -0.6511 31 1 -0.3633 -0.9614 -0.3631 32 1 1.4171 -0.4394 -2.1065 33 1 1.9927 -1.7933 -1.1018 34 1 5.3613 -0.4371 -0.8742 35 1 5.0905 -1.9978 0.8344 36 1 3.5197 -2.4203 0.1058 37 1 3.8700 0.2088 1.5706 38 1 3.5557 -1.2884 2.4795 39 1 -0.7907 -3.0001 2.7325 40 1 -1.3638 -1.9488 4.0634 41 1 -0.6544 -4.9320 4.1692 42 1 -2.1108 -4.1059 4.8183 43 1 -0.5893 -2.5938 7.6114 44 1 -1.3072 -7.5158 8.1197 45 1 1.2457 -2.1903 6.1553 46 1 1.8198 -3.7029 5.4028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326215216.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:35 Heat of formation + Delta-G solvation = -78.497894 kcal Electronic energy + Delta-G solvation = -31328.508706 eV Core-core repulsion = 27028.194997 eV Total energy + Delta-G solvation = -4300.313710 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.59842 -40.10774 -39.06914 -37.95139 -36.88027 -35.11329 -34.61932 -33.02214 -32.51996 -30.57378 -28.90087 -28.68048 -28.27836 -26.21583 -24.32959 -23.70913 -22.68751 -21.69759 -20.28723 -19.84188 -19.32410 -17.75450 -17.70000 -17.32145 -17.14564 -16.54584 -16.21517 -15.91958 -15.63816 -15.26362 -14.92123 -14.75546 -14.50366 -14.24725 -13.61823 -13.48864 -13.41298 -13.29120 -13.14422 -12.78504 -12.72245 -12.69252 -12.44281 -12.30110 -12.20189 -11.92745 -11.73232 -11.52764 -11.44545 -11.18322 -10.65225 -10.40244 -10.31889 -10.16322 -10.08589 -9.59525 -9.13712 -9.10648 -8.86450 -8.62472 -8.58510 -8.47058 -6.30688 -4.43470 1.35989 2.17174 2.29314 2.95036 3.12917 3.23385 3.31349 3.36586 3.52166 4.04630 4.18517 4.33600 4.53592 4.60911 4.72214 4.74787 4.83622 4.92593 4.98225 5.07982 5.17150 5.22253 5.32901 5.48772 5.53511 5.60011 5.64666 5.78735 5.83340 5.89516 5.96894 6.05770 6.27239 6.33005 6.36352 6.46222 6.51375 6.54423 6.84516 6.89229 6.99111 7.32112 7.45224 7.66132 7.88952 7.99650 8.09058 8.63107 8.78681 9.31962 10.79481 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024299 B = 0.002929 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.050282 B = 9558.543528 C =10034.050938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.150 3.850 3 H 0.081 0.919 4 C -0.154 4.154 5 C 0.517 3.483 6 O -0.552 6.552 7 N -0.725 5.725 8 C 0.091 3.909 9 C 0.023 3.977 10 N -0.583 5.583 11 C 0.505 3.495 12 O -0.495 6.495 13 C 0.510 3.490 14 O -0.526 6.526 15 N -0.567 5.567 16 C 0.101 3.899 17 C -0.132 4.132 18 C 0.217 3.783 19 O -0.572 6.572 20 C -0.554 4.554 21 H 0.079 0.921 22 C 0.091 3.909 23 N -0.884 5.884 24 Si 0.875 3.125 25 H -0.282 1.282 26 H -0.299 1.299 27 H -0.229 1.229 28 C 0.090 3.910 29 H 0.096 0.904 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.401 0.599 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.179 0.821 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.366 0.634 44 H 0.268 0.732 45 H 0.066 0.934 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.538 10.935 -13.446 18.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.047 3.953 3 H 0.099 0.901 4 C -0.195 4.195 5 C 0.304 3.696 6 O -0.430 6.430 7 N -0.378 5.378 8 C -0.034 4.034 9 C -0.099 4.099 10 N -0.317 5.317 11 C 0.288 3.712 12 O -0.370 6.370 13 C 0.294 3.706 14 O -0.407 6.407 15 N -0.297 5.297 16 C -0.021 4.021 17 C -0.170 4.170 18 C 0.177 3.823 19 O -0.378 6.378 20 C -0.591 4.591 21 H 0.097 0.903 22 C -0.115 4.115 23 N -0.520 5.520 24 Si 0.703 3.297 25 H -0.208 1.208 26 H -0.226 1.226 27 H -0.153 1.153 28 C -0.031 4.031 29 H 0.114 0.886 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.129 0.871 33 H 0.114 0.886 34 H 0.237 0.763 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.194 0.806 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.097 0.903 43 H 0.213 0.787 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.955 11.109 -14.304 18.777 hybrid contribution 0.092 0.120 0.109 0.187 sum 5.048 11.229 -14.194 18.790 Atomic orbital electron populations 1.22573 0.91154 1.02334 1.04446 1.21027 0.96903 0.95165 0.82183 0.90061 1.22484 0.93218 1.03101 1.00662 1.20592 0.88137 0.79558 0.81327 1.90754 1.84486 1.37347 1.30441 1.46064 1.10677 1.50754 1.30300 1.22307 1.02123 0.92807 0.86163 1.23893 0.78416 1.03327 1.04217 1.47692 1.07328 1.53600 1.23117 1.20215 0.85835 0.79538 0.85568 1.90780 1.18521 1.52037 1.75664 1.19823 0.84976 0.80063 0.85767 1.90207 1.18717 1.59298 1.72518 1.48591 1.13365 1.49333 1.18446 1.22767 0.80435 0.98270 1.00625 1.23217 1.01332 0.96723 0.95719 1.19980 0.85287 0.88946 0.88108 1.86505 1.45544 1.69551 1.36236 1.21146 0.95649 1.02942 1.39404 0.90257 1.24937 0.99699 0.93988 0.92868 1.69924 1.34294 1.13817 1.33933 0.87069 0.84067 0.81122 0.77469 1.20832 1.22629 1.15265 1.23076 1.01470 0.97476 0.81123 0.88575 0.93437 0.90977 0.87069 0.88596 0.76347 0.87895 0.90265 0.90728 0.80625 0.89306 0.90702 0.89230 0.90255 0.78662 0.92210 0.91528 0.89895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 7.66 37.16 0.28 -1.20 16 2 C 0.15 1.45 3.19 -68.21 -0.22 1.23 16 3 H 0.08 0.79 7.95 -51.93 -0.41 0.37 16 4 C -0.15 -1.39 4.86 -27.73 -0.13 -1.52 16 5 C 0.52 5.51 7.11 -11.26 -0.08 5.43 16 6 O -0.55 -8.01 17.91 5.56 0.10 -7.91 16 7 N -0.73 -5.85 5.30 -59.99 -0.32 -6.16 16 8 C 0.09 0.64 6.49 -3.70 -0.02 0.62 16 9 C 0.02 0.21 5.91 -4.16 -0.02 0.19 16 10 N -0.58 -6.18 2.78 -167.18 -0.46 -6.64 16 11 C 0.50 6.56 7.30 -11.58 -0.08 6.48 16 12 O -0.49 -6.83 9.24 5.50 0.05 -6.78 16 13 C 0.51 7.65 7.76 -11.58 -0.09 7.56 16 14 O -0.53 -8.15 13.38 5.50 0.07 -8.07 16 15 N -0.57 -9.34 3.34 -170.76 -0.57 -9.91 16 16 C 0.10 1.64 5.98 -2.35 -0.01 1.63 16 17 C -0.13 -2.52 4.74 -24.58 -0.12 -2.64 16 18 C 0.22 4.46 0.67 -89.94 -0.06 4.40 16 19 O -0.57 -11.55 10.62 -35.23 -0.37 -11.93 16 20 C -0.55 -13.83 8.81 -34.44 -0.30 -14.14 16 21 H 0.08 2.15 7.82 -52.49 -0.41 1.74 16 22 C 0.09 2.40 5.47 -17.82 -0.10 2.31 16 23 N -0.88 -25.12 13.96 55.43 0.77 -24.35 16 24 Si 0.88 20.21 23.93 -169.99 -4.07 16.14 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.30 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.23 -5.16 5.40 56.52 0.31 -4.85 16 28 C 0.09 1.63 6.21 -3.06 -0.02 1.62 16 29 H 0.10 1.15 5.54 -54.08 -0.30 0.85 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.76 7.29 -51.93 -0.38 0.38 16 32 H 0.11 0.94 7.98 -51.93 -0.41 0.53 16 33 H 0.10 0.82 7.09 -51.93 -0.37 0.45 16 34 H 0.40 2.75 8.91 -40.82 -0.36 2.39 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.59 7.03 -51.93 -0.37 0.22 16 37 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 38 H 0.18 1.94 3.69 -57.37 -0.21 1.73 16 39 H 0.09 1.34 6.37 -51.93 -0.33 1.01 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.09 1.72 8.04 -51.93 -0.42 1.30 16 42 H 0.08 1.56 4.82 -51.93 -0.25 1.31 16 43 H 0.37 6.35 9.08 45.56 0.41 6.76 16 44 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 45 H 0.07 1.16 8.05 -51.93 -0.42 0.74 16 46 H 0.08 1.57 7.66 -51.93 -0.40 1.17 16 LS Contribution 350.36 15.07 5.28 5.28 Total: -1.00 -30.87 350.36 -6.04 -36.91 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -5.54 Total: 11.44 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: -0.98 Total: 11.97 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: -0.58 Total: -47.06 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -0.15 Total: -34.69 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.07 Total: 16.14 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.87 -6.04 -36.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326215216.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.583 kcal (2) G-P(sol) polarization free energy of solvation -30.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds