Wall clock time and date at job start Wed Apr 1 2020 00:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.45692 * 2 1 4 4 C 1.52821 * 109.33565 * 240.29085 * 2 1 3 5 5 C 1.51191 * 108.68664 * 159.97706 * 4 2 1 6 6 O 1.21279 * 119.76638 * 251.18046 * 5 4 2 7 7 N 1.33628 * 120.46207 * 71.20558 * 5 4 2 8 8 C 1.46923 * 120.62474 * 0.24084 * 7 5 4 9 9 C 1.53221 * 108.81902 * 288.06321 * 8 7 5 10 10 N 1.46068 * 109.72019 * 81.59795 * 9 8 7 11 11 C 1.34781 * 118.73442 * 116.16098 * 10 9 8 12 12 O 1.21342 * 120.00495 * 190.73809 * 11 10 9 13 13 C 1.49453 * 119.99580 * 10.74012 * 11 10 9 14 14 O 1.21350 * 120.00198 * 6.72923 * 13 11 10 15 15 N 1.34777 * 119.99932 * 186.73302 * 13 11 10 16 16 C 1.47745 * 125.82094 * 359.90448 * 15 13 11 17 17 C 1.54911 * 104.83841 * 155.82948 * 16 15 13 18 18 C 1.55157 * 101.58297 * 37.09654 * 17 16 15 19 19 O 1.42900 * 110.87284 * 82.92950 * 18 17 16 20 20 C 1.50704 * 110.72206 * 206.13416 * 18 17 16 21 21 H 1.07994 * 120.00386 * 118.67557 * 20 18 17 22 22 C 1.37882 * 119.99417 * 298.67580 * 20 18 17 23 23 N 1.31518 * 119.99518 * 185.67346 * 22 20 18 24 24 Si 1.86792 * 120.00292 * 5.67161 * 22 20 18 25 25 H 1.48498 * 109.47152 * 85.56181 * 24 22 20 26 26 H 1.48506 * 109.46903 * 205.55682 * 24 22 20 27 27 H 1.48498 * 109.47304 * 325.55752 * 24 22 20 28 28 C 1.47027 * 125.64907 * 180.02562 * 15 13 11 29 29 H 1.08997 * 109.47320 * 279.30899 * 1 2 3 30 30 H 1.09001 * 109.46872 * 39.30967 * 1 2 3 31 31 H 1.09000 * 109.46903 * 159.31049 * 1 2 3 32 32 H 1.08999 * 109.63809 * 40.17882 * 4 2 1 33 33 H 1.08999 * 109.65533 * 279.78770 * 4 2 1 34 34 H 0.97003 * 119.68916 * 180.26064 * 7 5 4 35 35 H 1.09003 * 109.57491 * 168.26400 * 8 7 5 36 36 H 1.08996 * 109.57832 * 47.86375 * 8 7 5 37 37 H 1.08996 * 109.43289 * 321.52247 * 9 8 7 38 38 H 1.08999 * 109.38801 * 201.64740 * 9 8 7 39 39 H 1.09002 * 110.29410 * 37.02988 * 16 15 13 40 40 H 1.08992 * 110.43259 * 274.70754 * 16 15 13 41 41 H 1.09000 * 111.01185 * 279.02166 * 17 16 15 42 42 H 1.09003 * 111.00090 * 155.16803 * 17 16 15 43 43 H 0.96702 * 113.99710 * 184.93541 * 19 18 17 44 44 H 0.96997 * 119.99792 * 180.02562 * 23 22 20 45 45 H 1.08998 * 109.88307 * 61.60354 * 28 15 13 46 46 H 1.09001 * 109.87991 * 300.59536 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0360 -0.7147 -1.2525 5 6 3.4661 -0.2945 -1.5055 6 8 3.7237 0.4305 -2.4430 7 7 4.4482 -0.7167 -0.7037 8 6 4.1581 -1.6000 0.4339 9 6 3.4378 -0.7904 1.5172 10 7 2.0171 -0.6886 1.1936 11 6 1.1209 -1.2563 2.0250 12 8 -0.0402 -1.3583 1.6875 13 6 1.5573 -1.7601 3.3627 14 8 2.6876 -1.5500 3.7510 15 7 0.6954 -2.4479 4.1377 16 6 -0.7043 -2.7741 3.7953 17 6 -1.0379 -4.0278 4.6419 18 6 -0.2783 -3.7245 5.9604 19 8 -1.0510 -2.8732 6.8090 20 6 0.0811 -5.0020 6.6746 21 1 1.1175 -5.2479 6.8528 22 6 -0.9133 -5.8569 7.1005 23 7 -0.6077 -6.9142 7.8204 24 14 -2.6945 -5.5132 6.6550 25 1 -2.9892 -6.0851 5.3166 26 1 -3.5865 -6.1353 7.6663 27 1 -2.9239 -4.0463 6.6280 28 6 0.9912 -2.9978 5.4688 29 1 -0.3634 0.1662 1.0141 30 1 -0.3633 0.7952 -0.6511 31 1 -0.3633 -0.9614 -0.3631 32 1 1.4171 -0.4394 -2.1065 33 1 1.9927 -1.7933 -1.1018 34 1 5.3613 -0.4371 -0.8742 35 1 5.0905 -1.9978 0.8344 36 1 3.5197 -2.4203 0.1058 37 1 3.8700 0.2088 1.5706 38 1 3.5557 -1.2884 2.4795 39 1 -0.7907 -3.0001 2.7325 40 1 -1.3638 -1.9488 4.0634 41 1 -0.6544 -4.9320 4.1692 42 1 -2.1108 -4.1059 4.8183 43 1 -0.5893 -2.5938 7.6114 44 1 -1.3072 -7.5158 8.1197 45 1 1.2457 -2.1903 6.1553 46 1 1.8198 -3.7029 5.4028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326215216.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:34 Heat of formation + Delta-G solvation = -105.029556 kcal Electronic energy + Delta-G solvation = -31329.659206 eV Core-core repulsion = 27028.194997 eV Total energy + Delta-G solvation = -4301.464209 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.57620 -41.12242 -40.21562 -39.25742 -37.85520 -36.25436 -35.70900 -34.49340 -33.87875 -32.06381 -30.11715 -29.68394 -29.13799 -27.73287 -25.61158 -24.48401 -23.98878 -22.75649 -21.47372 -21.03687 -20.42078 -19.45350 -18.55233 -18.34390 -18.07818 -17.64211 -17.18253 -17.03440 -16.92452 -16.60055 -16.40562 -16.03785 -15.57637 -15.17730 -15.02317 -14.81534 -14.65748 -14.37415 -14.16124 -14.06782 -14.00518 -13.67038 -13.53354 -13.37068 -13.14560 -13.11120 -13.04527 -12.78375 -12.63362 -12.37427 -12.28675 -12.14701 -11.73381 -11.32812 -11.01458 -10.94582 -10.78006 -10.42543 -10.35421 -10.04664 -9.77776 -9.53213 -8.35071 -6.49671 0.27036 1.12681 1.39895 1.47432 1.48539 1.68139 2.02662 2.19699 2.31368 2.40681 2.99371 3.02082 3.38213 3.56161 3.75672 3.77783 3.87429 3.98449 4.04232 4.06650 4.16810 4.22144 4.26119 4.40742 4.47016 4.61175 4.67555 4.77430 4.81185 4.84028 4.91357 4.95278 5.06712 5.09055 5.14460 5.22135 5.42389 5.51619 5.53857 5.78317 5.93476 6.08128 6.15074 6.24401 6.58366 6.61978 6.86282 7.13248 7.15461 7.32201 8.78743 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024299 B = 0.002929 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.050282 B = 9558.543528 C =10034.050938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.153 3.847 3 H 0.085 0.915 4 C -0.146 4.146 5 C 0.515 3.485 6 O -0.595 6.595 7 N -0.713 5.713 8 C 0.096 3.904 9 C 0.024 3.976 10 N -0.575 5.575 11 C 0.509 3.491 12 O -0.502 6.502 13 C 0.510 3.490 14 O -0.532 6.532 15 N -0.576 5.576 16 C 0.115 3.885 17 C -0.135 4.135 18 C 0.216 3.784 19 O -0.574 6.574 20 C -0.548 4.548 21 H 0.044 0.956 22 C 0.040 3.960 23 N -0.934 5.934 24 Si 0.932 3.068 25 H -0.269 1.269 26 H -0.310 1.310 27 H -0.216 1.216 28 C 0.101 3.899 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.118 0.882 33 H 0.105 0.895 34 H 0.408 0.592 35 H 0.131 0.869 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.164 0.836 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.378 0.622 44 H 0.268 0.732 45 H 0.074 0.926 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.282 12.425 -15.228 20.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.050 3.950 3 H 0.103 0.897 4 C -0.187 4.187 5 C 0.302 3.698 6 O -0.477 6.477 7 N -0.365 5.365 8 C -0.028 4.028 9 C -0.097 4.097 10 N -0.308 5.308 11 C 0.291 3.709 12 O -0.379 6.379 13 C 0.295 3.705 14 O -0.413 6.413 15 N -0.307 5.307 16 C -0.006 4.006 17 C -0.173 4.173 18 C 0.175 3.825 19 O -0.382 6.382 20 C -0.586 4.586 21 H 0.062 0.938 22 C -0.161 4.161 23 N -0.573 5.573 24 Si 0.758 3.242 25 H -0.195 1.195 26 H -0.239 1.239 27 H -0.138 1.138 28 C -0.022 4.022 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.137 0.863 33 H 0.123 0.877 34 H 0.245 0.755 35 H 0.149 0.851 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.180 0.820 39 H 0.122 0.878 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.227 0.773 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.749 12.622 -16.092 20.995 hybrid contribution 0.340 -0.300 0.700 0.834 sum 5.089 12.322 -15.392 20.363 Atomic orbital electron populations 1.22456 0.91092 1.02698 1.03641 1.21077 0.96873 0.95229 0.81807 0.89708 1.22429 0.92331 1.03468 1.00452 1.20855 0.89030 0.78962 0.80903 1.90741 1.85161 1.39415 1.32362 1.46029 1.10735 1.49977 1.29713 1.22365 1.03332 0.92054 0.85076 1.23841 0.77817 1.03841 1.04244 1.47755 1.07570 1.52657 1.22829 1.19838 0.85996 0.80066 0.84955 1.90794 1.18825 1.52669 1.75571 1.20281 0.84573 0.79339 0.86349 1.90252 1.18938 1.59124 1.72994 1.48552 1.13768 1.50353 1.17989 1.22648 0.80302 0.96834 1.00836 1.23167 1.00866 0.98073 0.95214 1.19821 0.86908 0.87371 0.88358 1.86452 1.45763 1.69019 1.36968 1.21407 0.93915 1.04621 1.38657 0.93785 1.25703 1.03675 0.93805 0.92909 1.70054 1.35461 1.15467 1.36292 0.86183 0.79201 0.81517 0.77272 1.19507 1.23854 1.13850 1.22709 0.99625 0.97296 0.82552 0.90288 0.91840 0.91381 0.86329 0.87705 0.75508 0.85128 0.90015 0.90132 0.82006 0.87754 0.90217 0.89793 0.90429 0.77310 0.92334 0.90795 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 7.66 71.98 0.55 -1.93 16 2 C 0.15 2.56 3.19 45.00 0.14 2.70 16 3 H 0.08 1.42 7.95 -2.38 -0.02 1.40 16 4 C -0.15 -2.26 4.86 29.94 0.15 -2.12 16 5 C 0.52 9.89 7.11 87.99 0.63 10.51 16 6 O -0.60 -16.50 17.91 -3.03 -0.05 -16.56 16 7 N -0.71 -9.65 5.30 -462.75 -2.45 -12.10 16 8 C 0.10 1.07 6.49 86.37 0.56 1.63 16 9 C 0.02 0.38 5.91 86.53 0.51 0.89 16 10 N -0.57 -10.74 2.78 -801.20 -2.23 -12.97 16 11 C 0.51 12.05 7.30 87.27 0.64 12.69 16 12 O -0.50 -12.64 9.24 -3.22 -0.03 -12.67 16 13 C 0.51 14.35 7.76 87.27 0.68 15.02 16 14 O -0.53 -15.61 13.38 -3.25 -0.04 -15.66 16 15 N -0.58 -18.00 3.34 -812.54 -2.71 -20.71 16 16 C 0.12 3.49 5.98 86.79 0.52 4.01 16 17 C -0.14 -4.94 4.74 31.99 0.15 -4.79 16 18 C 0.22 8.71 0.67 -10.35 -0.01 8.71 16 19 O -0.57 -22.25 10.62 -148.98 -1.58 -23.83 16 20 C -0.55 -27.84 8.81 25.60 0.23 -27.61 16 21 H 0.04 2.49 7.82 -2.91 -0.02 2.47 16 22 C 0.04 2.13 5.47 84.66 0.46 2.59 16 23 N -0.93 -54.64 13.96 21.45 0.30 -54.34 16 24 Si 0.93 41.61 23.93 68.60 1.64 43.25 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 H -0.31 -14.34 7.11 99.48 0.71 -13.63 16 27 H -0.22 -9.09 5.40 99.48 0.54 -8.55 16 28 C 0.10 3.58 6.21 86.73 0.54 4.12 16 29 H 0.08 1.71 5.54 -36.41 -0.20 1.51 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 1.26 7.29 -2.39 -0.02 1.24 16 32 H 0.12 1.71 7.98 -2.39 -0.02 1.69 16 33 H 0.10 1.47 7.09 -2.39 -0.02 1.45 16 34 H 0.41 4.59 8.91 -92.71 -0.83 3.77 16 35 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.08 0.95 7.03 -2.39 -0.02 0.93 16 37 H 0.08 1.22 8.10 -2.39 -0.02 1.20 16 38 H 0.16 3.22 3.69 -88.52 -0.33 2.89 16 39 H 0.10 2.87 6.37 -2.39 -0.02 2.85 16 40 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.08 3.13 8.04 -2.39 -0.02 3.11 16 42 H 0.08 2.86 4.82 -2.39 -0.01 2.85 16 43 H 0.38 12.60 9.08 -74.06 -0.67 11.93 16 44 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 45 H 0.07 2.49 8.05 -2.39 -0.02 2.47 16 46 H 0.07 2.61 7.66 -2.39 -0.02 2.59 16 Total: -1.00 -67.03 350.36 -2.53 -69.56 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: -1.12 Total: 29.60 kcal Atomic # 6 Polarization: 20.67 SS G_CDS: 5.74 Total: 26.42 kcal Atomic # 7 Polarization: -93.02 SS G_CDS: -7.09 Total: -100.11 kcal Atomic # 8 Polarization: -67.00 SS G_CDS: -1.71 Total: -68.71 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 1.64 Total: 43.25 kcal Total: -67.03 -2.53 -69.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326215216.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.467 kcal (2) G-P(sol) polarization free energy of solvation -67.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds