Wall clock time and date at job start Wed Apr 1 2020 00:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.87164 * 2 1 4 4 C 1.54324 * 110.00764 * 238.90534 * 2 1 3 5 5 C 1.55152 * 102.94192 * 262.70336 * 4 2 1 6 6 H 1.08995 * 111.03945 * 82.58780 * 5 4 2 7 7 N 1.46906 * 111.00342 * 206.42459 * 5 4 2 8 8 C 1.46900 * 110.99934 * 198.64828 * 7 5 4 9 9 C 1.50704 * 109.46695 * 180.02562 * 8 7 5 10 10 O 1.21291 * 120.00124 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99498 * 179.97438 * 9 8 7 12 12 C 1.37104 * 119.99651 * 179.72230 * 11 9 8 13 13 H 1.07996 * 120.00238 * 0.28087 * 12 11 9 14 14 C 1.38951 * 119.99699 * 180.27671 * 12 11 9 15 15 N 1.31414 * 120.00229 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99708 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46806 * 90.00304 * 16 14 12 18 18 H 1.48497 * 109.46997 * 209.99978 * 16 14 12 19 19 H 1.48496 * 109.47140 * 330.00473 * 16 14 12 20 20 C 1.54916 * 101.58220 * 324.49781 * 5 4 2 21 21 N 1.47018 * 109.88072 * 121.02016 * 2 1 3 22 22 C 1.34769 * 125.65158 * 300.66208 * 21 2 1 23 23 O 1.21746 * 120.00370 * 177.29083 * 22 21 2 24 24 C 1.46376 * 119.99929 * 357.29697 * 22 21 2 25 25 C 1.33968 * 119.23386 * 352.25510 * 24 22 21 26 26 O 1.35002 * 121.69377 * 180.12674 * 25 24 22 27 27 C 1.43251 * 116.82511 * 343.31661 * 26 25 24 28 28 C 1.53546 * 108.08844 * 45.25123 * 27 26 25 29 29 O 1.36219 * 119.23298 * 172.52628 * 24 22 21 30 30 H 1.09003 * 109.46869 * 281.80002 * 1 2 3 31 31 H 1.08993 * 109.47020 * 41.80106 * 1 2 3 32 32 H 1.09001 * 109.47007 * 161.80884 * 1 2 3 33 33 H 1.08998 * 110.71852 * 144.34013 * 4 2 1 34 34 H 1.08998 * 110.71918 * 21.06632 * 4 2 1 35 35 H 1.00900 * 110.99735 * 322.60577 * 7 5 4 36 36 H 1.09000 * 109.46920 * 60.00483 * 8 7 5 37 37 H 1.08997 * 109.47125 * 300.00125 * 8 7 5 38 38 H 0.96993 * 120.00496 * 0.02562 * 11 9 8 39 39 H 0.97000 * 120.00132 * 179.97438 * 15 14 12 40 40 H 1.08999 * 110.36333 * 155.84763 * 20 5 4 41 41 H 1.08998 * 110.36530 * 278.05906 * 20 5 4 42 42 H 1.08001 * 119.15397 * 0.36856 * 25 24 22 43 43 H 1.09006 * 109.73403 * 285.60434 * 27 26 25 44 44 H 1.08997 * 109.77892 * 164.92771 * 27 26 25 45 45 H 1.09000 * 109.75445 * 182.21944 * 28 27 26 46 46 H 1.09005 * 109.79414 * 61.50257 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7489 -1.2417 5 6 2.3574 -2.1680 -0.6905 6 1 1.4524 -2.7746 -0.6594 7 7 3.4046 -2.8296 -1.4803 8 6 3.3866 -4.2828 -1.2660 9 6 4.4724 -4.9255 -2.0901 10 8 5.1908 -4.2403 -2.7869 11 7 4.6457 -6.2615 -2.0518 12 6 5.6299 -6.8468 -2.8059 13 1 6.2690 -6.2369 -3.4270 14 6 5.8049 -8.2248 -2.7710 15 7 5.0268 -8.9671 -2.0155 16 14 7.1462 -9.0223 -3.7979 17 1 8.4003 -9.0925 -3.0056 18 1 6.7260 -10.3938 -4.1821 19 1 7.3786 -8.2145 -5.0220 20 6 2.8599 -1.8466 0.7393 21 7 2.0300 -0.7125 1.1848 22 6 1.7720 -0.3838 2.4661 23 8 2.2005 -1.0769 3.3706 24 6 0.9763 0.8066 2.7702 25 6 0.6447 1.6431 1.7777 26 8 -0.0851 2.7564 2.0024 27 6 -0.7954 2.8239 3.2446 28 6 0.1545 2.3700 4.3623 29 8 0.5950 1.0411 4.0568 30 1 -0.3633 0.2102 1.0060 31 1 -0.3633 0.7660 -0.6849 32 1 -0.3633 -0.9763 -0.3208 33 1 2.9683 -0.2807 -1.6163 34 1 1.2961 -0.7904 -2.0200 35 1 3.3130 -2.6074 -2.4603 36 1 2.4178 -4.6823 -1.5658 37 1 3.5570 -4.4965 -0.2108 38 1 4.0715 -6.8094 -1.4943 39 1 5.1488 -9.9291 -1.9914 40 1 2.7129 -2.7049 1.3948 41 1 3.9122 -1.5632 0.7167 42 1 0.9663 1.4191 0.7713 43 1 -1.6631 2.1651 3.2086 44 1 -1.1186 3.8483 3.4295 45 1 -0.3716 2.3734 5.3169 46 1 1.0126 3.0402 4.4123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331953977.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:52 Heat of formation + Delta-G solvation = -67.248175 kcal Electronic energy + Delta-G solvation = -29634.273606 eV Core-core repulsion = 25334.447721 eV Total energy + Delta-G solvation = -4299.825885 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.86405 -40.27889 -38.44608 -38.00568 -37.07949 -35.44067 -33.91227 -32.90405 -31.83884 -31.23684 -30.47922 -28.58950 -26.62677 -26.28612 -25.48329 -24.15591 -23.04658 -21.16685 -20.71297 -20.08089 -19.29195 -18.66992 -17.94089 -17.61049 -17.18766 -16.42462 -16.15772 -15.79290 -15.61610 -15.22472 -15.14798 -14.96619 -14.61633 -14.47763 -14.35865 -13.99901 -13.82263 -13.48094 -13.45465 -13.18193 -12.89576 -12.57349 -12.49708 -12.33357 -12.11737 -11.74809 -11.58684 -11.45637 -11.32493 -11.20810 -11.06549 -11.00164 -10.79189 -10.39542 -10.22211 -10.09053 -9.51502 -8.98871 -8.52555 -8.40269 -8.18724 -7.97146 -6.41969 -3.83011 1.01076 2.18399 2.72034 2.94881 3.18132 3.24591 3.26983 3.32463 3.86205 3.88361 3.94790 4.08676 4.15780 4.25112 4.35657 4.39680 4.42101 4.56642 4.58223 4.75828 4.87001 4.97436 5.03651 5.07175 5.13413 5.22158 5.27418 5.36036 5.46360 5.53399 5.58480 5.69688 5.77651 5.82092 5.89508 5.95626 6.01954 6.25300 6.37855 6.92793 7.09679 7.19666 7.53525 7.55006 7.94351 8.05366 8.60064 9.17143 9.53369 10.04216 10.75619 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031511 B = 0.001930 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.359669 B =14506.594106 C =15021.064390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.111 3.889 3 H 0.095 0.905 4 C -0.126 4.126 5 C 0.074 3.926 6 H 0.062 0.938 7 N -0.655 5.655 8 C 0.049 3.951 9 C 0.440 3.560 10 O -0.584 6.584 11 N -0.562 5.562 12 C -0.300 4.300 13 H 0.103 0.897 14 C 0.022 3.978 15 N -0.901 5.901 16 Si 0.931 3.069 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.270 1.270 20 C 0.118 3.882 21 N -0.608 5.608 22 C 0.592 3.408 23 O -0.520 6.520 24 C -0.085 4.085 25 C -0.029 4.029 26 O -0.300 6.300 27 C 0.010 3.990 28 C 0.018 3.982 29 O -0.286 6.286 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.356 0.644 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.393 0.607 39 H 0.272 0.728 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.224 0.776 43 H 0.081 0.919 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.030 23.533 7.588 29.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.007 3.993 3 H 0.112 0.888 4 C -0.164 4.164 5 C -0.037 4.037 6 H 0.079 0.921 7 N -0.289 5.289 8 C -0.084 4.084 9 C 0.226 3.774 10 O -0.468 6.468 11 N -0.199 5.199 12 C -0.429 4.429 13 H 0.121 0.879 14 C -0.180 4.180 15 N -0.542 5.542 16 Si 0.758 3.242 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.194 1.194 20 C -0.004 4.004 21 N -0.344 5.344 22 C 0.381 3.619 23 O -0.397 6.397 24 C -0.134 4.134 25 C -0.093 4.093 26 O -0.212 6.212 27 C -0.065 4.065 28 C -0.058 4.058 29 O -0.200 6.200 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.177 0.823 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.226 0.774 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.239 0.761 43 H 0.099 0.901 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.863 23.558 8.233 29.046 hybrid contribution -0.672 -0.959 -0.317 1.213 sum -15.535 22.599 7.915 28.543 Atomic orbital electron populations 1.22896 0.94123 1.04052 1.03911 1.21985 0.94782 0.96360 0.86130 0.88845 1.22884 1.02789 0.95059 0.95663 1.22634 0.93353 0.94267 0.93453 0.92056 1.59940 1.46741 1.08139 1.14077 1.21762 0.97669 0.87745 1.01223 1.19747 0.87814 0.83086 0.86774 1.90524 1.48904 1.62413 1.44973 1.41865 1.31716 1.05190 1.41119 1.19701 1.10609 0.90500 1.22129 0.87880 1.25278 0.98600 0.96305 0.97790 1.69613 1.38810 1.06435 1.39332 0.85848 0.80339 0.78153 0.79886 1.20369 1.20951 1.19426 1.22332 0.95249 0.88355 0.94472 1.48207 1.51144 1.31230 1.03841 1.16654 0.79939 0.83853 0.81442 1.90879 1.52277 1.52170 1.44348 1.20220 1.07402 1.00871 0.84891 1.25751 0.94502 0.87487 1.01609 1.86156 1.59521 1.37585 1.37939 1.23748 0.94461 1.04736 0.83587 1.23657 0.98807 0.83758 0.99545 1.86428 1.80491 1.29594 1.23501 0.90643 0.90246 0.90956 0.88600 0.89258 0.82289 0.93573 0.89419 0.77423 0.91839 0.90043 0.89452 0.76144 0.90106 0.86135 0.86088 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.22 7.73 37.16 0.29 -0.93 16 2 C 0.11 0.84 2.71 -66.95 -0.18 0.66 16 3 H 0.09 0.56 6.16 -51.93 -0.32 0.24 16 4 C -0.13 -0.98 5.89 -24.90 -0.15 -1.12 16 5 C 0.07 0.81 3.32 -65.56 -0.22 0.60 16 6 H 0.06 0.65 7.92 -51.93 -0.41 0.24 16 7 N -0.66 -9.51 6.00 -105.72 -0.63 -10.15 16 8 C 0.05 0.82 6.04 -4.97 -0.03 0.79 16 9 C 0.44 10.14 7.82 -10.98 -0.09 10.06 16 10 O -0.58 -15.44 15.78 5.55 0.09 -15.36 16 11 N -0.56 -14.12 5.29 -10.96 -0.06 -14.18 16 12 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 13 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 14 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 15 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 16 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 C 0.12 1.48 6.57 -2.52 -0.02 1.46 16 21 N -0.61 -6.92 3.08 -178.88 -0.55 -7.47 16 22 C 0.59 8.35 7.54 -12.99 -0.10 8.25 16 23 O -0.52 -9.61 17.17 -9.87 -0.17 -9.78 16 24 C -0.09 -1.00 5.97 -37.81 -0.23 -1.23 16 25 C -0.03 -0.25 7.48 29.23 0.22 -0.03 16 26 O -0.30 -2.36 10.47 -30.83 -0.32 -2.68 16 27 C 0.01 0.05 7.30 37.44 0.27 0.33 16 28 C 0.02 0.13 7.31 37.44 0.27 0.40 16 29 O -0.29 -3.47 10.29 -45.68 -0.47 -3.94 16 30 H 0.08 0.58 4.61 -51.93 -0.24 0.34 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.48 8.01 -51.93 -0.42 0.06 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 0.53 7.83 -51.93 -0.41 0.12 16 35 H 0.36 5.16 8.23 -39.29 -0.32 4.84 16 36 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 37 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 39 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.08 1.13 8.01 -51.93 -0.42 0.71 16 41 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.22 1.52 1.84 -71.16 -0.13 1.39 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.12 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 372.07 15.07 5.61 5.61 Total: -1.00 -35.90 372.07 -7.30 -43.20 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -6.30 Total: 11.28 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: -0.19 Total: 11.26 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -0.52 Total: -55.58 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.87 Total: -31.76 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.90 -7.30 -43.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331953977.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.048 kcal (2) G-P(sol) polarization free energy of solvation -35.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds