Wall clock time and date at job start Wed Apr 1 2020 00:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.87164 * 2 1 4 4 C 1.54324 * 110.00764 * 238.90534 * 2 1 3 5 5 C 1.55152 * 102.94192 * 262.70336 * 4 2 1 6 6 H 1.08995 * 111.03945 * 82.58780 * 5 4 2 7 7 N 1.46906 * 111.00342 * 206.42459 * 5 4 2 8 8 C 1.46900 * 110.99934 * 198.64828 * 7 5 4 9 9 C 1.50704 * 109.46695 * 180.02562 * 8 7 5 10 10 O 1.21291 * 120.00124 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99498 * 179.97438 * 9 8 7 12 12 C 1.37104 * 119.99651 * 179.72230 * 11 9 8 13 13 H 1.07996 * 120.00238 * 0.28087 * 12 11 9 14 14 C 1.38951 * 119.99699 * 180.27671 * 12 11 9 15 15 N 1.31414 * 120.00229 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99708 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46806 * 90.00304 * 16 14 12 18 18 H 1.48497 * 109.46997 * 209.99978 * 16 14 12 19 19 H 1.48496 * 109.47140 * 330.00473 * 16 14 12 20 20 C 1.54916 * 101.58220 * 324.49781 * 5 4 2 21 21 N 1.47018 * 109.88072 * 121.02016 * 2 1 3 22 22 C 1.34769 * 125.65158 * 300.66208 * 21 2 1 23 23 O 1.21746 * 120.00370 * 177.29083 * 22 21 2 24 24 C 1.46376 * 119.99929 * 357.29697 * 22 21 2 25 25 C 1.33968 * 119.23386 * 352.25510 * 24 22 21 26 26 O 1.35002 * 121.69377 * 180.12674 * 25 24 22 27 27 C 1.43251 * 116.82511 * 343.31661 * 26 25 24 28 28 C 1.53546 * 108.08844 * 45.25123 * 27 26 25 29 29 O 1.36219 * 119.23298 * 172.52628 * 24 22 21 30 30 H 1.09003 * 109.46869 * 281.80002 * 1 2 3 31 31 H 1.08993 * 109.47020 * 41.80106 * 1 2 3 32 32 H 1.09001 * 109.47007 * 161.80884 * 1 2 3 33 33 H 1.08998 * 110.71852 * 144.34013 * 4 2 1 34 34 H 1.08998 * 110.71918 * 21.06632 * 4 2 1 35 35 H 1.00900 * 110.99735 * 322.60577 * 7 5 4 36 36 H 1.09000 * 109.46920 * 60.00483 * 8 7 5 37 37 H 1.08997 * 109.47125 * 300.00125 * 8 7 5 38 38 H 0.96993 * 120.00496 * 0.02562 * 11 9 8 39 39 H 0.97000 * 120.00132 * 179.97438 * 15 14 12 40 40 H 1.08999 * 110.36333 * 155.84763 * 20 5 4 41 41 H 1.08998 * 110.36530 * 278.05906 * 20 5 4 42 42 H 1.08001 * 119.15397 * 0.36856 * 25 24 22 43 43 H 1.09006 * 109.73403 * 285.60434 * 27 26 25 44 44 H 1.08997 * 109.77892 * 164.92771 * 27 26 25 45 45 H 1.09000 * 109.75445 * 182.21944 * 28 27 26 46 46 H 1.09005 * 109.79414 * 61.50257 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7489 -1.2417 5 6 2.3574 -2.1680 -0.6905 6 1 1.4524 -2.7746 -0.6594 7 7 3.4046 -2.8296 -1.4803 8 6 3.3866 -4.2828 -1.2660 9 6 4.4724 -4.9255 -2.0901 10 8 5.1908 -4.2403 -2.7869 11 7 4.6457 -6.2615 -2.0518 12 6 5.6299 -6.8468 -2.8059 13 1 6.2690 -6.2369 -3.4270 14 6 5.8049 -8.2248 -2.7710 15 7 5.0268 -8.9671 -2.0155 16 14 7.1462 -9.0223 -3.7979 17 1 8.4003 -9.0925 -3.0056 18 1 6.7260 -10.3938 -4.1821 19 1 7.3786 -8.2145 -5.0220 20 6 2.8599 -1.8466 0.7393 21 7 2.0300 -0.7125 1.1848 22 6 1.7720 -0.3838 2.4661 23 8 2.2005 -1.0769 3.3706 24 6 0.9763 0.8066 2.7702 25 6 0.6447 1.6431 1.7777 26 8 -0.0851 2.7564 2.0024 27 6 -0.7954 2.8239 3.2446 28 6 0.1545 2.3700 4.3623 29 8 0.5950 1.0411 4.0568 30 1 -0.3633 0.2102 1.0060 31 1 -0.3633 0.7660 -0.6849 32 1 -0.3633 -0.9763 -0.3208 33 1 2.9683 -0.2807 -1.6163 34 1 1.2961 -0.7904 -2.0200 35 1 3.3130 -2.6074 -2.4603 36 1 2.4178 -4.6823 -1.5658 37 1 3.5570 -4.4965 -0.2108 38 1 4.0715 -6.8094 -1.4943 39 1 5.1488 -9.9291 -1.9914 40 1 2.7129 -2.7049 1.3948 41 1 3.9122 -1.5632 0.7167 42 1 0.9663 1.4191 0.7713 43 1 -1.6631 2.1651 3.2086 44 1 -1.1186 3.8483 3.4295 45 1 -0.3716 2.3734 5.3169 46 1 1.0126 3.0402 4.4123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331953977.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:51 Heat of formation + Delta-G solvation = -96.114364 kcal Electronic energy + Delta-G solvation = -29635.525338 eV Core-core repulsion = 25334.447721 eV Total energy + Delta-G solvation = -4301.077617 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.60455 -41.07638 -40.12180 -39.09777 -37.87652 -36.60858 -35.82484 -33.78509 -33.24754 -32.65722 -31.24805 -29.46848 -27.79634 -27.40466 -26.11605 -25.78878 -23.91880 -21.92559 -21.61295 -21.07862 -20.78624 -19.91189 -19.34361 -18.52460 -17.89693 -17.65084 -17.16539 -17.07366 -16.68026 -16.37259 -16.25192 -15.96907 -15.76308 -15.65467 -15.21562 -15.18374 -15.06160 -14.63899 -14.55803 -14.09507 -13.96426 -13.72017 -13.50330 -13.24841 -13.19192 -12.99921 -12.91238 -12.80204 -12.41223 -12.21818 -12.11728 -11.97161 -11.94375 -11.74498 -11.55041 -11.49961 -11.07081 -10.34374 -10.01353 -9.95176 -9.42463 -9.12809 -8.46152 -5.95006 0.21319 1.36445 1.38663 1.42444 1.55221 1.98818 2.05532 2.15924 2.29152 2.53208 2.91683 3.21266 3.27532 3.38783 3.44864 3.54710 3.60351 3.83657 3.85894 3.95853 4.10142 4.19114 4.21080 4.27454 4.29311 4.42247 4.48434 4.56679 4.61206 4.62775 4.67117 4.80979 4.83421 4.88402 4.99368 5.03548 5.15289 5.30446 5.41620 5.74055 5.87064 6.07509 6.17538 6.35665 6.43290 6.59841 6.96998 7.12782 7.56659 8.11122 8.71202 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031511 B = 0.001930 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.359669 B =14506.594106 C =15021.064390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.105 3.895 3 H 0.119 0.881 4 C -0.114 4.114 5 C 0.080 3.920 6 H 0.073 0.927 7 N -0.666 5.666 8 C 0.064 3.936 9 C 0.439 3.561 10 O -0.620 6.620 11 N -0.575 5.575 12 C -0.332 4.332 13 H 0.081 0.919 14 C -0.015 4.015 15 N -0.921 5.921 16 Si 0.994 3.006 17 H -0.273 1.273 18 H -0.271 1.271 19 H -0.270 1.270 20 C 0.116 3.884 21 N -0.603 5.603 22 C 0.583 3.417 23 O -0.585 6.585 24 C -0.124 4.124 25 C 0.015 3.985 26 O -0.301 6.301 27 C 0.009 3.991 28 C 0.009 3.991 29 O -0.324 6.324 30 H 0.061 0.939 31 H 0.112 0.888 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.358 0.642 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.396 0.604 39 H 0.277 0.723 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.242 0.758 43 H 0.088 0.912 44 H 0.157 0.843 45 H 0.144 0.856 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.963 25.593 6.252 31.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.003 3.997 3 H 0.136 0.864 4 C -0.152 4.152 5 C -0.031 4.031 6 H 0.091 0.909 7 N -0.301 5.301 8 C -0.069 4.069 9 C 0.227 3.773 10 O -0.506 6.506 11 N -0.212 5.212 12 C -0.462 4.462 13 H 0.099 0.901 14 C -0.215 4.215 15 N -0.562 5.562 16 Si 0.818 3.182 17 H -0.199 1.199 18 H -0.196 1.196 19 H -0.195 1.195 20 C -0.008 4.008 21 N -0.337 5.337 22 C 0.375 3.625 23 O -0.467 6.467 24 C -0.172 4.172 25 C -0.050 4.050 26 O -0.212 6.212 27 C -0.066 4.066 28 C -0.066 4.066 29 O -0.240 6.240 30 H 0.079 0.921 31 H 0.131 0.869 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.138 0.862 35 H 0.180 0.820 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.229 0.771 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.256 0.744 43 H 0.106 0.894 44 H 0.175 0.825 45 H 0.162 0.838 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.840 25.658 6.871 31.451 hybrid contribution -0.131 -1.452 0.118 1.462 sum -16.971 24.206 6.989 30.378 Atomic orbital electron populations 1.22881 0.92574 1.05368 1.03826 1.22323 0.95986 0.97081 0.84260 0.86406 1.22908 1.03898 0.92240 0.96159 1.22613 0.92395 0.96191 0.91896 0.90870 1.59833 1.48923 1.06682 1.14617 1.21586 0.96202 0.89004 1.00100 1.20806 0.88160 0.82313 0.86030 1.90491 1.50569 1.63062 1.46514 1.41956 1.31693 1.06139 1.41389 1.19681 1.11912 0.91180 1.23431 0.90098 1.26073 1.00530 0.96283 0.98621 1.69679 1.39754 1.06856 1.39948 0.84911 0.77649 0.77467 0.78212 1.19884 1.19593 1.19499 1.22224 0.94864 0.88288 0.95383 1.48241 1.50308 1.30889 1.04296 1.17197 0.79570 0.84231 0.81494 1.90823 1.55113 1.54468 1.46282 1.19948 1.10032 1.01365 0.85823 1.25989 0.91793 0.85932 1.01297 1.86162 1.59018 1.36754 1.39257 1.24057 0.93749 1.07050 0.81720 1.23994 0.99404 0.81848 1.01330 1.86354 1.81285 1.32333 1.24019 0.92066 0.86899 0.90899 0.88431 0.86182 0.82031 0.90939 0.88757 0.77062 0.91350 0.92310 0.91109 0.74383 0.89412 0.82519 0.83797 0.90468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.71 7.73 71.98 0.56 -1.15 16 2 C 0.11 1.30 2.71 45.34 0.12 1.43 16 3 H 0.12 0.95 6.16 -2.39 -0.01 0.93 16 4 C -0.11 -1.41 5.89 31.78 0.19 -1.22 16 5 C 0.08 1.63 3.32 46.31 0.15 1.78 16 6 H 0.07 1.38 7.92 -2.39 -0.02 1.36 16 7 N -0.67 -18.70 6.00 -488.39 -2.93 -21.63 16 8 C 0.06 2.10 6.04 85.56 0.52 2.61 16 9 C 0.44 20.51 7.82 87.66 0.69 21.20 16 10 O -0.62 -33.43 15.78 -3.06 -0.05 -33.48 16 11 N -0.57 -29.46 5.29 -306.98 -1.62 -31.08 16 12 C -0.33 -18.88 9.68 84.04 0.81 -18.07 16 13 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 14 C -0.02 -0.83 5.50 84.93 0.47 -0.37 16 15 N -0.92 -50.21 13.05 21.66 0.28 -49.92 16 16 Si 0.99 43.12 29.55 68.60 2.03 45.15 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 18 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 20 C 0.12 2.97 6.57 86.86 0.57 3.54 16 21 N -0.60 -13.61 3.08 -838.06 -2.58 -16.19 16 22 C 0.58 17.16 7.54 86.36 0.65 17.82 16 23 O -0.59 -23.42 17.17 9.86 0.17 -23.25 16 24 C -0.12 -2.89 5.97 23.42 0.14 -2.75 16 25 C 0.02 0.23 7.48 66.85 0.50 0.73 16 26 O -0.30 -3.72 10.47 -69.24 -0.72 -4.45 16 27 C 0.01 0.07 7.30 72.17 0.53 0.59 16 28 C 0.01 0.11 7.31 72.17 0.53 0.64 16 29 O -0.32 -8.03 10.29 -71.92 -0.74 -8.77 16 30 H 0.06 0.78 4.61 -2.39 -0.01 0.77 16 31 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.07 0.71 8.01 -2.39 -0.02 0.69 16 33 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.12 0.83 7.83 -2.39 -0.02 0.81 16 35 H 0.36 9.87 8.23 -89.69 -0.74 9.13 16 36 H 0.07 2.04 8.09 -2.39 -0.02 2.02 16 37 H 0.09 3.02 8.14 -2.39 -0.02 3.01 16 38 H 0.40 19.42 7.90 -92.71 -0.73 18.68 16 39 H 0.28 14.16 8.31 -92.71 -0.77 13.38 16 40 H 0.06 1.75 8.01 -2.39 -0.02 1.73 16 41 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.24 2.46 1.84 -20.45 -0.04 2.42 16 43 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 44 H 0.16 0.09 8.14 -2.39 -0.02 0.07 16 45 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -83.05 372.07 -0.20 -83.25 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: -0.45 Total: 33.58 kcal Atomic # 6 Polarization: 20.36 SS G_CDS: 6.42 Total: 26.78 kcal Atomic # 7 Polarization: -111.98 SS G_CDS: -6.85 Total: -118.83 kcal Atomic # 8 Polarization: -68.60 SS G_CDS: -1.34 Total: -69.94 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -83.05 -0.20 -83.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331953977.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.861 kcal (2) G-P(sol) polarization free energy of solvation -83.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds