Wall clock time and date at job start Wed Apr 1 2020 00:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.87594 * 2 1 4 4 C 1.54327 * 109.88038 * 238.98317 * 2 1 3 5 5 C 1.55159 * 102.94439 * 218.38895 * 4 2 1 6 6 H 1.09005 * 111.00436 * 277.39630 * 5 4 2 7 7 N 1.46888 * 111.00493 * 153.57568 * 5 4 2 8 8 C 1.46902 * 111.00032 * 158.18521 * 7 5 4 9 9 C 1.50698 * 109.47331 * 180.02562 * 8 7 5 10 10 O 1.21294 * 119.99983 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00112 * 179.97438 * 9 8 7 12 12 C 1.37103 * 119.99943 * 179.97438 * 11 9 8 13 13 H 1.07996 * 120.00052 * 0.02562 * 12 11 9 14 14 C 1.38949 * 119.99728 * 179.97438 * 12 11 9 15 15 N 1.31414 * 119.99947 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 120.00337 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.46691 * 270.00023 * 16 14 12 18 18 H 1.48502 * 109.46794 * 29.99437 * 16 14 12 19 19 H 1.48497 * 109.47145 * 149.99958 * 16 14 12 20 20 C 1.54911 * 101.61182 * 35.48407 * 5 4 2 21 21 N 1.47022 * 109.88349 * 121.17910 * 2 1 3 22 22 C 1.34777 * 125.64542 * 298.38835 * 21 2 1 23 23 O 1.21741 * 119.99948 * 354.53339 * 22 21 2 24 24 C 1.46377 * 120.00082 * 174.52926 * 22 21 2 25 25 C 1.33973 * 119.23172 * 184.88850 * 24 22 21 26 26 O 1.34999 * 121.68714 * 180.39628 * 25 24 22 27 27 C 1.43249 * 116.76363 * 342.79737 * 26 25 24 28 28 C 1.53541 * 108.08954 * 45.48783 * 27 26 25 29 29 O 1.36216 * 119.22860 * 4.62444 * 24 22 21 30 30 H 1.08999 * 109.47222 * 181.01428 * 1 2 3 31 31 H 1.09003 * 109.47065 * 301.01590 * 1 2 3 32 32 H 1.09001 * 109.47348 * 61.01497 * 1 2 3 33 33 H 1.09000 * 110.71735 * 100.03199 * 4 2 1 34 34 H 1.08998 * 110.87569 * 336.82450 * 4 2 1 35 35 H 1.00906 * 111.00517 * 282.13785 * 7 5 4 36 36 H 1.09000 * 109.47539 * 59.99858 * 8 7 5 37 37 H 1.09005 * 109.46918 * 299.99453 * 8 7 5 38 38 H 0.96994 * 120.00321 * 359.97438 * 11 9 8 39 39 H 0.96997 * 120.00272 * 179.97438 * 15 14 12 40 40 H 1.09001 * 110.36647 * 81.85059 * 20 5 4 41 41 H 1.09002 * 110.36722 * 204.17318 * 20 5 4 42 42 H 1.07997 * 119.16001 * 0.36770 * 25 24 22 43 43 H 1.09003 * 109.73766 * 165.13619 * 27 26 25 44 44 H 1.09004 * 109.73975 * 285.83630 * 27 26 25 45 45 H 1.09000 * 109.75682 * 61.47759 * 28 27 26 46 46 H 1.08999 * 109.75749 * 182.21909 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2438 5 6 3.2876 -1.5133 -0.6946 6 1 4.1656 -0.8681 -0.6623 7 7 3.5538 -2.7208 -1.4876 8 6 4.9485 -3.1554 -1.3329 9 6 5.1836 -4.3932 -2.1595 10 8 4.2782 -4.8672 -2.8130 11 7 6.3999 -4.9738 -2.1728 12 6 6.6136 -6.1003 -2.9245 13 1 5.8075 -6.5222 -3.5063 14 6 7.8677 -6.6984 -2.9386 15 7 8.0727 -7.7779 -3.6595 16 14 9.2622 -5.9681 -1.9329 17 1 10.0000 -4.9768 -2.7565 18 1 8.7066 -5.2970 -0.7304 19 1 10.1886 -7.0499 -1.5126 20 6 2.8155 -1.8805 0.7344 21 7 2.0300 -0.7158 1.1829 22 6 1.8074 -0.3655 2.4651 23 8 1.2265 0.6735 2.7203 24 6 2.2642 -1.2343 3.5510 25 6 1.9492 -0.9221 4.8152 26 8 2.3510 -1.6838 5.8549 27 6 2.7886 -3.0131 5.5496 28 6 3.7241 -2.9398 4.3343 29 8 2.9949 -2.3444 3.2521 30 1 -0.3633 -1.0275 0.0182 31 1 -0.3633 0.5295 0.8808 32 1 -0.3634 0.4980 -0.8989 33 1 2.3529 -0.0432 -2.0201 34 1 1.3064 -1.4436 -1.6231 35 1 2.9147 -3.4624 -1.2430 36 1 5.1462 -3.3756 -0.2839 37 1 5.6157 -2.3619 -1.6697 38 1 7.1240 -4.5946 -1.6507 39 1 8.9482 -8.1952 -3.6696 40 1 2.1899 -2.7728 0.7097 41 1 3.6730 -2.0354 1.3892 42 1 1.3591 -0.0383 5.0076 43 1 3.3250 -3.4292 6.4024 44 1 1.9278 -3.6392 5.3143 45 1 4.5948 -2.3302 4.5758 46 1 4.0429 -3.9436 4.0535 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331953979.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:55 Heat of formation + Delta-G solvation = -106.706266 kcal Electronic energy + Delta-G solvation = -29977.391194 eV Core-core repulsion = 25675.854277 eV Total energy + Delta-G solvation = -4301.536917 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.49760 -40.21367 -38.62353 -37.85170 -37.41718 -34.94266 -33.88682 -32.64458 -31.70875 -31.60556 -30.13665 -29.15466 -26.57654 -26.02621 -25.63883 -23.92196 -23.00216 -21.19558 -20.47400 -19.57115 -19.42750 -18.71811 -18.39496 -17.86804 -16.99067 -16.55298 -16.29739 -15.80674 -15.45574 -15.20707 -14.88546 -14.85554 -14.68542 -14.53722 -14.27383 -14.07389 -13.80212 -13.54669 -13.32516 -13.02415 -12.79912 -12.60642 -12.54116 -12.39263 -12.24411 -12.13934 -11.79786 -11.54457 -11.35806 -11.20060 -11.12112 -10.96409 -10.83111 -10.63123 -10.24978 -10.00902 -9.60926 -9.00504 -8.64213 -8.47702 -8.24631 -8.19700 -6.34353 -3.85991 1.02057 2.51878 2.61913 2.94971 2.98365 3.03804 3.05830 3.12056 3.69652 3.89337 3.94199 4.06900 4.31444 4.40875 4.44013 4.56367 4.66069 4.75495 4.79784 4.88608 4.93599 4.99409 5.07988 5.10340 5.18655 5.22442 5.43461 5.48843 5.54409 5.60182 5.67077 5.73655 5.81123 5.84601 5.88380 5.95491 6.09307 6.18534 6.32134 6.93689 7.00687 7.25949 7.46532 7.54566 7.85312 8.11027 8.56024 8.91589 9.38854 9.78654 10.78769 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011847 B = 0.002842 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.927521 B = 9848.331469 C =11682.836535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.134 3.866 3 H 0.079 0.921 4 C -0.117 4.117 5 C 0.075 3.925 6 H 0.093 0.907 7 N -0.651 5.651 8 C 0.046 3.954 9 C 0.450 3.550 10 O -0.564 6.564 11 N -0.590 5.590 12 C -0.305 4.305 13 H 0.120 0.880 14 C 0.042 3.958 15 N -0.881 5.881 16 Si 0.880 3.120 17 H -0.270 1.270 18 H -0.270 1.270 19 H -0.277 1.277 20 C 0.075 3.925 21 N -0.598 5.598 22 C 0.600 3.400 23 O -0.540 6.540 24 C -0.092 4.092 25 C 0.041 3.959 26 O -0.301 6.301 27 C 0.013 3.987 28 C 0.015 3.985 29 O -0.299 6.299 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.354 0.646 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.370 0.630 39 H 0.274 0.726 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.190 0.810 43 H 0.122 0.878 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.283 14.415 18.067 24.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.031 3.969 3 H 0.097 0.903 4 C -0.155 4.155 5 C -0.037 4.037 6 H 0.111 0.889 7 N -0.282 5.282 8 C -0.087 4.087 9 C 0.235 3.765 10 O -0.446 6.446 11 N -0.229 5.229 12 C -0.434 4.434 13 H 0.137 0.863 14 C -0.161 4.161 15 N -0.521 5.521 16 Si 0.706 3.294 17 H -0.196 1.196 18 H -0.196 1.196 19 H -0.202 1.202 20 C -0.050 4.050 21 N -0.331 5.331 22 C 0.390 3.610 23 O -0.420 6.420 24 C -0.140 4.140 25 C -0.026 4.026 26 O -0.213 6.213 27 C -0.062 4.062 28 C -0.061 4.061 29 O -0.214 6.214 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.175 0.825 36 H 0.065 0.935 37 H 0.107 0.893 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.207 0.793 43 H 0.139 0.861 44 H 0.100 0.900 45 H 0.096 0.904 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.910 14.745 17.157 24.698 hybrid contribution 1.454 -0.260 1.740 2.283 sum -8.456 14.485 18.897 25.267 Atomic orbital electron populations 1.22131 0.94538 1.02458 1.02838 1.21670 0.94795 0.96485 0.83981 0.90326 1.22754 0.97586 0.99411 0.95752 1.22848 0.98310 0.93437 0.89073 0.88873 1.60136 1.03957 1.07473 1.56666 1.21777 0.90979 0.97694 0.98203 1.19681 0.83723 0.86491 0.86591 1.90575 1.42797 1.65437 1.45789 1.42202 1.10080 1.26799 1.43863 1.19434 0.98858 1.01557 1.23555 0.86259 1.25042 0.97503 0.96137 0.97461 1.69620 1.23731 1.19252 1.39492 0.86673 0.82822 0.79567 0.80305 1.19572 1.19560 1.20199 1.23361 0.96038 0.88475 0.97140 1.48257 1.51773 1.28483 1.04578 1.16754 0.79257 0.84162 0.80791 1.90854 1.44155 1.23886 1.83083 1.20504 1.05394 0.93976 0.94127 1.23142 0.97439 0.96736 0.85314 1.86146 1.78273 1.25102 1.31734 1.23740 0.99577 0.82670 1.00226 1.23685 0.94001 1.00967 0.87400 1.86559 1.60483 1.39686 1.34706 0.92360 0.91559 0.91328 0.89449 0.89556 0.82495 0.93544 0.89311 0.79703 0.91588 0.91023 0.89064 0.79291 0.86055 0.89979 0.90387 0.85901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.10 37.16 0.34 -1.23 16 2 C 0.13 1.36 3.43 -66.95 -0.23 1.13 16 3 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 4 C -0.12 -1.14 6.17 -24.89 -0.15 -1.30 16 5 C 0.08 0.82 3.34 -65.57 -0.22 0.60 16 6 H 0.09 0.97 7.87 -51.93 -0.41 0.56 16 7 N -0.65 -9.15 6.02 -105.73 -0.64 -9.78 16 8 C 0.05 0.70 6.05 -4.98 -0.03 0.67 16 9 C 0.45 9.75 7.82 -10.99 -0.09 9.66 16 10 O -0.56 -14.65 15.78 5.55 0.09 -14.56 16 11 N -0.59 -13.56 5.09 -10.96 -0.06 -13.62 16 12 C -0.31 -8.45 10.16 -14.93 -0.15 -8.60 16 13 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 14 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 15 N -0.88 -25.36 13.96 55.50 0.77 -24.58 16 16 Si 0.88 18.86 27.74 -169.99 -4.71 14.15 16 17 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 18 H -0.27 -5.21 6.52 56.52 0.37 -4.84 16 19 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 20 C 0.07 0.80 5.43 -2.51 -0.01 0.78 16 21 N -0.60 -6.77 3.07 -164.61 -0.50 -7.27 16 22 C 0.60 7.51 7.51 -12.99 -0.10 7.41 16 23 O -0.54 -7.80 15.39 5.15 0.08 -7.72 16 24 C -0.09 -1.01 6.56 -37.81 -0.25 -1.25 16 25 C 0.04 0.40 10.60 29.23 0.31 0.70 16 26 O -0.30 -2.68 10.47 -30.82 -0.32 -3.00 16 27 C 0.01 0.08 7.29 37.44 0.27 0.35 16 28 C 0.02 0.10 7.32 37.44 0.27 0.38 16 29 O -0.30 -2.98 6.90 -34.54 -0.24 -3.22 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.74 7.09 -51.93 -0.37 0.37 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.88 7.86 -51.93 -0.41 0.48 16 35 H 0.35 5.20 7.95 -39.29 -0.31 4.89 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 1.21 8.09 -51.93 -0.42 0.79 16 38 H 0.37 7.42 5.76 -40.82 -0.24 7.19 16 39 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.07 0.80 7.77 -51.93 -0.40 0.39 16 41 H 0.09 0.98 6.14 -51.93 -0.32 0.66 16 42 H 0.19 1.70 7.39 -52.49 -0.39 1.31 16 43 H 0.12 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 376.29 15.07 5.67 5.67 Total: -1.00 -34.18 376.29 -6.61 -40.79 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -6.62 Total: 12.82 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -0.13 Total: 10.33 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.42 Total: -55.26 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.39 Total: -28.50 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -4.71 Total: 14.15 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.18 -6.61 -40.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331953979.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.915 kcal (2) G-P(sol) polarization free energy of solvation -34.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds