Wall clock time and date at job start Wed Apr 1 2020 00:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.87594 * 2 1 4 4 C 1.54327 * 109.88038 * 238.98317 * 2 1 3 5 5 C 1.55159 * 102.94439 * 218.38895 * 4 2 1 6 6 H 1.09005 * 111.00436 * 277.39630 * 5 4 2 7 7 N 1.46888 * 111.00493 * 153.57568 * 5 4 2 8 8 C 1.46902 * 111.00032 * 158.18521 * 7 5 4 9 9 C 1.50698 * 109.47331 * 180.02562 * 8 7 5 10 10 O 1.21294 * 119.99983 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00112 * 179.97438 * 9 8 7 12 12 C 1.37103 * 119.99943 * 179.97438 * 11 9 8 13 13 H 1.07996 * 120.00052 * 0.02562 * 12 11 9 14 14 C 1.38949 * 119.99728 * 179.97438 * 12 11 9 15 15 N 1.31414 * 119.99947 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 120.00337 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.46691 * 270.00023 * 16 14 12 18 18 H 1.48502 * 109.46794 * 29.99437 * 16 14 12 19 19 H 1.48497 * 109.47145 * 149.99958 * 16 14 12 20 20 C 1.54911 * 101.61182 * 35.48407 * 5 4 2 21 21 N 1.47022 * 109.88349 * 121.17910 * 2 1 3 22 22 C 1.34777 * 125.64542 * 298.38835 * 21 2 1 23 23 O 1.21741 * 119.99948 * 354.53339 * 22 21 2 24 24 C 1.46377 * 120.00082 * 174.52926 * 22 21 2 25 25 C 1.33973 * 119.23172 * 184.88850 * 24 22 21 26 26 O 1.34999 * 121.68714 * 180.39628 * 25 24 22 27 27 C 1.43249 * 116.76363 * 342.79737 * 26 25 24 28 28 C 1.53541 * 108.08954 * 45.48783 * 27 26 25 29 29 O 1.36216 * 119.22860 * 4.62444 * 24 22 21 30 30 H 1.08999 * 109.47222 * 181.01428 * 1 2 3 31 31 H 1.09003 * 109.47065 * 301.01590 * 1 2 3 32 32 H 1.09001 * 109.47348 * 61.01497 * 1 2 3 33 33 H 1.09000 * 110.71735 * 100.03199 * 4 2 1 34 34 H 1.08998 * 110.87569 * 336.82450 * 4 2 1 35 35 H 1.00906 * 111.00517 * 282.13785 * 7 5 4 36 36 H 1.09000 * 109.47539 * 59.99858 * 8 7 5 37 37 H 1.09005 * 109.46918 * 299.99453 * 8 7 5 38 38 H 0.96994 * 120.00321 * 359.97438 * 11 9 8 39 39 H 0.96997 * 120.00272 * 179.97438 * 15 14 12 40 40 H 1.09001 * 110.36647 * 81.85059 * 20 5 4 41 41 H 1.09002 * 110.36722 * 204.17318 * 20 5 4 42 42 H 1.07997 * 119.16001 * 0.36770 * 25 24 22 43 43 H 1.09003 * 109.73766 * 165.13619 * 27 26 25 44 44 H 1.09004 * 109.73975 * 285.83630 * 27 26 25 45 45 H 1.09000 * 109.75682 * 61.47759 * 28 27 26 46 46 H 1.08999 * 109.75749 * 182.21909 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2438 5 6 3.2876 -1.5133 -0.6946 6 1 4.1656 -0.8681 -0.6623 7 7 3.5538 -2.7208 -1.4876 8 6 4.9485 -3.1554 -1.3329 9 6 5.1836 -4.3932 -2.1595 10 8 4.2782 -4.8672 -2.8130 11 7 6.3999 -4.9738 -2.1728 12 6 6.6136 -6.1003 -2.9245 13 1 5.8075 -6.5222 -3.5063 14 6 7.8677 -6.6984 -2.9386 15 7 8.0727 -7.7779 -3.6595 16 14 9.2622 -5.9681 -1.9329 17 1 10.0000 -4.9768 -2.7565 18 1 8.7066 -5.2970 -0.7304 19 1 10.1886 -7.0499 -1.5126 20 6 2.8155 -1.8805 0.7344 21 7 2.0300 -0.7158 1.1829 22 6 1.8074 -0.3655 2.4651 23 8 1.2265 0.6735 2.7203 24 6 2.2642 -1.2343 3.5510 25 6 1.9492 -0.9221 4.8152 26 8 2.3510 -1.6838 5.8549 27 6 2.7886 -3.0131 5.5496 28 6 3.7241 -2.9398 4.3343 29 8 2.9949 -2.3444 3.2521 30 1 -0.3633 -1.0275 0.0182 31 1 -0.3633 0.5295 0.8808 32 1 -0.3634 0.4980 -0.8989 33 1 2.3529 -0.0432 -2.0201 34 1 1.3064 -1.4436 -1.6231 35 1 2.9147 -3.4624 -1.2430 36 1 5.1462 -3.3756 -0.2839 37 1 5.6157 -2.3619 -1.6697 38 1 7.1240 -4.5946 -1.6507 39 1 8.9482 -8.1952 -3.6696 40 1 2.1899 -2.7728 0.7097 41 1 3.6730 -2.0354 1.3892 42 1 1.3591 -0.0383 5.0076 43 1 3.3250 -3.4292 6.4024 44 1 1.9278 -3.6392 5.3143 45 1 4.5948 -2.3302 4.5758 46 1 4.0429 -3.9436 4.0535 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331953979.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:55 Heat of formation + Delta-G solvation = -134.087136 kcal Electronic energy + Delta-G solvation = -29978.578518 eV Core-core repulsion = 25675.854277 eV Total energy + Delta-G solvation = -4302.724240 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.20345 -41.05236 -40.24020 -38.92205 -38.08715 -36.26733 -35.62519 -33.72106 -33.38303 -32.33692 -31.18725 -29.79477 -28.05394 -26.82631 -26.40553 -25.49494 -23.83648 -22.07886 -21.35027 -21.14419 -20.28842 -20.23806 -19.39931 -18.62852 -17.90712 -17.70691 -17.27421 -16.88015 -16.78711 -16.42228 -15.91579 -15.78178 -15.64941 -15.42380 -15.26440 -14.98853 -14.93859 -14.75487 -14.44556 -14.27067 -14.17241 -13.83984 -13.56590 -13.38587 -13.27923 -13.11895 -12.96256 -12.80913 -12.38933 -12.32864 -11.99520 -11.93990 -11.91416 -11.68448 -11.63704 -11.48839 -11.10870 -10.40698 -10.22281 -9.88440 -9.33373 -9.20835 -8.38921 -5.99809 0.23146 1.31890 1.38260 1.46714 1.73656 1.88654 1.99029 2.24134 2.25367 2.31366 2.73248 3.17754 3.30527 3.40480 3.51236 3.71675 3.84287 3.96729 3.99981 4.02913 4.15012 4.18684 4.21332 4.28149 4.42174 4.45813 4.48047 4.57393 4.62439 4.68504 4.74334 4.79002 4.92993 4.97524 5.06680 5.13176 5.28169 5.38188 5.55282 5.69342 5.92735 6.05061 6.20780 6.33259 6.44137 6.62107 6.91022 6.96503 7.42767 7.99589 8.78816 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011847 B = 0.002842 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.927521 B = 9848.331469 C =11682.836535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.132 3.868 3 H 0.080 0.920 4 C -0.109 4.109 5 C 0.081 3.919 6 H 0.108 0.892 7 N -0.664 5.664 8 C 0.060 3.940 9 C 0.450 3.550 10 O -0.614 6.614 11 N -0.591 5.591 12 C -0.327 4.327 13 H 0.055 0.945 14 C -0.016 4.016 15 N -0.936 5.936 16 Si 0.965 3.035 17 H -0.259 1.259 18 H -0.228 1.228 19 H -0.277 1.277 20 C 0.083 3.917 21 N -0.599 5.599 22 C 0.594 3.406 23 O -0.568 6.568 24 C -0.107 4.107 25 C 0.052 3.948 26 O -0.308 6.308 27 C 0.009 3.991 28 C 0.010 3.990 29 O -0.311 6.311 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.348 0.652 36 H 0.081 0.919 37 H 0.117 0.883 38 H 0.390 0.610 39 H 0.278 0.722 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.191 0.809 43 H 0.151 0.849 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.580 16.223 20.473 27.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.029 3.971 3 H 0.098 0.902 4 C -0.148 4.148 5 C -0.030 4.030 6 H 0.126 0.874 7 N -0.296 5.296 8 C -0.072 4.072 9 C 0.238 3.762 10 O -0.498 6.498 11 N -0.233 5.233 12 C -0.457 4.457 13 H 0.073 0.927 14 C -0.214 4.214 15 N -0.577 5.577 16 Si 0.784 3.216 17 H -0.183 1.183 18 H -0.151 1.151 19 H -0.202 1.202 20 C -0.042 4.042 21 N -0.331 5.331 22 C 0.385 3.615 23 O -0.451 6.451 24 C -0.155 4.155 25 C -0.016 4.016 26 O -0.220 6.220 27 C -0.065 4.065 28 C -0.065 4.065 29 O -0.228 6.228 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.168 0.832 36 H 0.098 0.902 37 H 0.135 0.865 38 H 0.226 0.774 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.114 0.886 42 H 0.208 0.792 43 H 0.169 0.831 44 H 0.102 0.898 45 H 0.101 0.899 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.214 16.569 19.577 26.931 hybrid contribution 0.793 -0.893 0.966 1.536 sum -7.421 15.676 20.544 26.886 Atomic orbital electron populations 1.22074 0.94356 1.02082 1.02873 1.21743 0.94975 0.96554 0.83780 0.90171 1.22709 0.97001 0.99332 0.95739 1.22855 0.99227 0.92189 0.88713 0.87436 1.60134 1.03250 1.08188 1.58002 1.21713 0.92267 0.94710 0.98475 1.20976 0.82351 0.87402 0.85520 1.90557 1.44339 1.67190 1.47749 1.42019 1.11422 1.25823 1.43987 1.19005 0.97960 1.03866 1.24840 0.92697 1.26122 1.00618 0.96137 0.98548 1.69809 1.24995 1.21322 1.41589 0.85372 0.77673 0.78919 0.79590 1.18346 1.15061 1.20219 1.23274 0.95965 0.87959 0.96995 1.48321 1.51558 1.28585 1.04602 1.17033 0.78972 0.84096 0.81408 1.90828 1.45546 1.25149 1.83571 1.20312 1.06705 0.94635 0.93834 1.23208 0.96470 0.96651 0.85253 1.86139 1.78014 1.26280 1.31589 1.24020 0.99863 0.81317 1.01335 1.23945 0.93842 1.01817 0.86898 1.86504 1.60704 1.39320 1.36226 0.92831 0.93245 0.89598 0.88207 0.90122 0.83189 0.90166 0.86511 0.77440 0.91204 0.91658 0.88598 0.79197 0.83113 0.89806 0.89915 0.83889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.10 71.98 0.66 -2.25 16 2 C 0.13 2.50 3.43 45.34 0.16 2.66 16 3 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 4 C -0.11 -1.92 6.17 31.78 0.20 -1.73 16 5 C 0.08 1.54 3.34 46.31 0.15 1.70 16 6 H 0.11 1.80 7.87 -2.38 -0.02 1.78 16 7 N -0.66 -17.21 6.02 -488.41 -2.94 -20.15 16 8 C 0.06 1.64 6.05 85.56 0.52 2.16 16 9 C 0.45 19.11 7.82 87.66 0.69 19.80 16 10 O -0.61 -32.69 15.78 -3.07 -0.05 -32.74 16 11 N -0.59 -26.54 5.09 -306.98 -1.56 -28.11 16 12 C -0.33 -18.69 10.16 84.04 0.85 -17.84 16 13 H 0.05 3.76 7.39 -2.91 -0.02 3.74 16 14 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 15 N -0.94 -55.65 13.96 21.66 0.30 -55.35 16 16 Si 0.96 37.38 27.74 68.60 1.90 39.28 16 17 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 18 H -0.23 -7.19 6.52 99.48 0.65 -6.55 16 19 H -0.28 -10.73 7.11 99.48 0.71 -10.03 16 20 C 0.08 1.59 5.43 86.85 0.47 2.06 16 21 N -0.60 -12.78 3.07 -792.92 -2.43 -15.21 16 22 C 0.59 14.45 7.51 86.36 0.65 15.10 16 23 O -0.57 -16.40 15.39 -4.48 -0.07 -16.47 16 24 C -0.11 -2.22 6.56 23.42 0.15 -2.06 16 25 C 0.05 0.95 10.60 66.85 0.71 1.66 16 26 O -0.31 -4.94 10.47 -69.21 -0.72 -5.66 16 27 C 0.01 0.09 7.29 72.16 0.53 0.62 16 28 C 0.01 0.11 7.32 72.16 0.53 0.64 16 29 O -0.31 -5.60 6.90 -82.53 -0.57 -6.17 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.05 1.10 7.09 -2.39 -0.02 1.08 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.10 1.53 8.14 -2.39 -0.02 1.52 16 34 H 0.08 1.54 7.86 -2.39 -0.02 1.52 16 35 H 0.35 9.83 7.95 -89.69 -0.71 9.12 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.12 2.62 8.09 -2.38 -0.02 2.60 16 38 H 0.39 14.27 5.76 -92.71 -0.53 13.74 16 39 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 40 H 0.07 1.36 7.77 -2.39 -0.02 1.34 16 41 H 0.10 1.79 6.14 -2.39 -0.01 1.77 16 42 H 0.19 3.35 7.39 -2.91 -0.02 3.33 16 43 H 0.15 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -79.81 376.29 0.30 -79.51 By element: Atomic # 1 Polarization: 39.23 SS G_CDS: -0.28 Total: 38.95 kcal Atomic # 6 Polarization: 15.39 SS G_CDS: 6.72 Total: 22.11 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -6.63 Total: -118.81 kcal Atomic # 8 Polarization: -59.63 SS G_CDS: -1.41 Total: -61.04 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 1.90 Total: 39.28 kcal Total: -79.81 0.30 -79.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331953979.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.576 kcal (2) G-P(sol) polarization free energy of solvation -79.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds