Wall clock time and date at job start Wed Apr 1 2020 00:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.99796 * 2 1 4 4 C 1.54317 * 109.88706 * 121.09732 * 2 1 3 5 5 C 1.55156 * 103.10516 * 97.31452 * 4 2 1 6 6 H 1.09002 * 111.00354 * 277.34329 * 5 4 2 7 7 N 1.46894 * 111.00651 * 153.48786 * 5 4 2 8 8 C 1.46905 * 110.99927 * 155.00079 * 7 5 4 9 9 C 1.50696 * 109.47085 * 180.02562 * 8 7 5 10 10 O 1.21297 * 120.00292 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00208 * 180.02562 * 9 8 7 12 12 C 1.37096 * 120.00240 * 179.97438 * 11 9 8 13 13 H 1.08001 * 120.00135 * 359.97438 * 12 11 9 14 14 C 1.38953 * 120.00004 * 179.97438 * 12 11 9 15 15 N 1.31406 * 120.00072 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 120.00041 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47607 * 89.99285 * 16 14 12 18 18 H 1.48501 * 109.47282 * 209.99707 * 16 14 12 19 19 H 1.48507 * 109.47031 * 329.99240 * 16 14 12 20 20 C 1.54910 * 101.57850 * 35.41087 * 5 4 2 21 21 N 1.47319 * 109.84891 * 238.70305 * 2 1 3 22 22 C 1.34778 * 125.61587 * 59.50363 * 21 2 1 23 23 O 1.21742 * 119.99818 * 172.87303 * 22 21 2 24 24 C 1.46378 * 120.00308 * 352.87898 * 22 21 2 25 25 C 1.33980 * 119.22821 * 20.11356 * 24 22 21 26 26 O 1.34995 * 121.68675 * 180.12889 * 25 24 22 27 27 C 1.43245 * 116.82808 * 343.30963 * 26 25 24 28 28 C 1.53553 * 108.08700 * 45.25981 * 27 26 25 29 29 O 1.36212 * 119.23414 * 200.38247 * 24 22 21 30 30 H 1.09004 * 109.47432 * 318.30592 * 1 2 3 31 31 H 1.08993 * 109.47552 * 78.30837 * 1 2 3 32 32 H 1.09002 * 109.46617 * 198.30915 * 1 2 3 33 33 H 1.08998 * 110.71853 * 338.86074 * 4 2 1 34 34 H 1.09005 * 110.72043 * 215.76460 * 4 2 1 35 35 H 1.00898 * 110.99803 * 31.04952 * 7 5 4 36 36 H 1.09007 * 109.46949 * 300.00008 * 8 7 5 37 37 H 1.08993 * 109.47124 * 60.00183 * 8 7 5 38 38 H 0.97004 * 120.00098 * 359.97438 * 11 9 8 39 39 H 0.97001 * 120.00620 * 179.97438 * 15 14 12 40 40 H 1.09004 * 110.36245 * 81.83665 * 20 5 4 41 41 H 1.09007 * 110.36781 * 204.04247 * 20 5 4 42 42 H 1.07999 * 119.15504 * 0.36790 * 25 24 22 43 43 H 1.08998 * 109.74168 * 285.60822 * 27 26 25 44 44 H 1.09002 * 109.74184 * 164.90861 * 27 26 25 45 45 H 1.09004 * 109.75118 * 182.21910 * 28 27 26 46 46 H 1.08995 * 109.75630 * 61.47055 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7495 1.2426 5 6 2.3555 -2.1700 0.6957 6 1 1.4503 -2.7765 0.6650 7 7 3.4017 -2.8291 1.4887 8 6 3.2896 -4.2910 1.3968 9 6 4.3764 -4.9310 2.2215 10 8 5.1669 -4.2376 2.8261 11 7 4.4707 -6.2738 2.2866 12 6 5.4597 -6.8561 3.0366 13 1 6.1636 -6.2386 3.5748 14 6 5.5565 -8.2406 3.1041 15 7 6.5048 -8.7987 3.8224 16 14 4.3396 -9.3085 2.1725 17 1 4.8651 -9.5864 0.8117 18 1 4.1466 -10.5888 2.8997 19 1 3.0392 -8.5992 2.0656 20 6 2.8597 -1.8524 -0.7342 21 7 2.0302 -0.7198 -1.1840 22 6 1.7737 -0.3947 -2.4666 23 8 2.3434 -0.9808 -3.3688 24 6 0.8102 0.6633 -2.7749 25 6 0.4993 1.5607 -1.8299 26 8 -0.3845 2.5550 -2.0595 27 6 -0.6954 2.8403 -3.4284 28 6 -0.9362 1.5067 -4.1505 29 8 0.2464 0.7092 -4.0140 30 1 -0.3634 0.7674 0.6836 31 1 -0.3634 0.2082 -1.0063 32 1 -0.3633 -0.9757 0.3229 33 1 1.2919 -0.7890 2.0200 34 1 2.9640 -0.2812 1.6199 35 1 3.3729 -2.5240 2.4500 36 1 2.3159 -4.6051 1.7729 37 1 3.3937 -4.5986 0.3563 38 1 3.8387 -6.8285 1.8029 39 1 6.5722 -9.7651 3.8699 40 1 3.9114 -1.5668 -0.7108 41 1 2.7156 -2.7133 -1.3872 42 1 0.9706 1.4890 -0.8608 43 1 0.1388 3.3654 -3.8936 44 1 -1.5938 3.4552 -3.4815 45 1 -1.1369 1.6904 -5.2060 46 1 -1.7830 0.9905 -3.6981 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331953981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:59 Heat of formation + Delta-G solvation = -63.894935 kcal Electronic energy + Delta-G solvation = -29705.917067 eV Core-core repulsion = 25406.236589 eV Total energy + Delta-G solvation = -4299.680478 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.91014 -40.28948 -38.59388 -38.08322 -37.15681 -35.48553 -33.97108 -33.01081 -31.84188 -31.66077 -30.53827 -28.67877 -26.73942 -26.42638 -25.42934 -24.02764 -23.05023 -21.18533 -20.74677 -20.10457 -19.42251 -18.71883 -18.42599 -17.62196 -17.40308 -16.43166 -16.05598 -15.89478 -15.76272 -15.30701 -15.28673 -14.85429 -14.70280 -14.52822 -14.40045 -14.07151 -13.84714 -13.58866 -13.48045 -13.18738 -13.06437 -12.73865 -12.57166 -12.46957 -12.06384 -12.00463 -11.81148 -11.55118 -11.35992 -11.30551 -11.16688 -11.08145 -10.90785 -10.60128 -10.14158 -9.98537 -9.58562 -9.02989 -8.64773 -8.39984 -8.30370 -8.19041 -6.32108 -3.83689 0.99541 2.06870 2.61633 2.93124 3.01891 3.07302 3.15190 3.22466 3.70946 3.81604 3.89614 4.05472 4.09625 4.14016 4.28385 4.35146 4.42102 4.50675 4.53500 4.73594 4.79179 4.83357 4.99086 5.00382 5.04346 5.18507 5.23149 5.33873 5.40928 5.46975 5.54645 5.57637 5.70528 5.73436 5.79820 5.84396 5.92758 5.98486 6.32982 6.88429 6.97338 7.14772 7.44140 7.56436 7.88465 8.12920 8.57923 8.93556 9.40990 9.80296 10.80858 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025949 B = 0.002057 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.766519 B =13605.764918 C =14107.301097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.116 3.884 3 H 0.090 0.910 4 C -0.129 4.129 5 C 0.075 3.925 6 H 0.064 0.936 7 N -0.655 5.655 8 C 0.046 3.954 9 C 0.449 3.551 10 O -0.565 6.565 11 N -0.589 5.589 12 C -0.305 4.305 13 H 0.120 0.880 14 C 0.041 3.959 15 N -0.880 5.880 16 Si 0.880 3.120 17 H -0.270 1.270 18 H -0.277 1.277 19 H -0.270 1.270 20 C 0.120 3.880 21 N -0.609 5.609 22 C 0.593 3.407 23 O -0.519 6.519 24 C -0.087 4.087 25 C -0.010 4.010 26 O -0.301 6.301 27 C 0.011 3.989 28 C 0.019 3.981 29 O -0.287 6.287 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.358 0.642 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.371 0.629 39 H 0.274 0.726 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.209 0.791 43 H 0.081 0.919 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.687 22.953 -11.706 33.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.013 3.987 3 H 0.107 0.893 4 C -0.167 4.167 5 C -0.037 4.037 6 H 0.082 0.918 7 N -0.289 5.289 8 C -0.086 4.086 9 C 0.235 3.765 10 O -0.447 6.447 11 N -0.229 5.229 12 C -0.434 4.434 13 H 0.138 0.862 14 C -0.162 4.162 15 N -0.520 5.520 16 Si 0.706 3.294 17 H -0.195 1.195 18 H -0.202 1.202 19 H -0.195 1.195 20 C -0.003 4.003 21 N -0.346 5.346 22 C 0.382 3.618 23 O -0.395 6.395 24 C -0.135 4.135 25 C -0.075 4.075 26 O -0.213 6.213 27 C -0.065 4.065 28 C -0.057 4.057 29 O -0.201 6.201 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.179 0.821 36 H 0.065 0.935 37 H 0.107 0.893 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.224 0.776 43 H 0.100 0.900 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.299 22.981 -12.319 32.440 hybrid contribution -1.860 -1.142 -0.316 2.206 sum -21.159 21.838 -12.635 32.928 Atomic orbital electron populations 1.23012 0.94211 1.03741 1.04311 1.21978 0.94841 0.96061 0.85813 0.89252 1.22930 1.02843 0.95090 0.95872 1.22644 0.93277 0.94233 0.93519 0.91789 1.59904 1.46743 1.04949 1.17296 1.21806 0.97312 0.88272 1.01247 1.19646 0.88019 0.82622 0.86211 1.90571 1.44132 1.61818 1.48152 1.42205 1.29753 1.05442 1.45460 1.19428 1.07873 0.91074 1.25031 0.86242 1.25046 0.97196 0.96570 0.97357 1.69617 1.31806 1.11352 1.39234 0.86670 0.81009 0.81062 0.80624 1.19539 1.20190 1.19544 1.22322 0.95432 0.88173 0.94335 1.48295 1.51187 1.31169 1.03913 1.16656 0.81567 0.82205 0.81420 1.90878 1.50468 1.53420 1.44695 1.20186 1.04782 1.00325 0.88252 1.24897 0.93855 0.87204 1.01567 1.86158 1.57930 1.50068 1.27135 1.23742 1.03660 0.97479 0.81580 1.23665 0.87129 0.91339 1.03607 1.86423 1.40657 1.67493 1.25512 0.90414 0.90085 0.91298 0.89274 0.88686 0.82103 0.93460 0.89292 0.79665 0.91586 0.89459 0.90233 0.77562 0.90035 0.86067 0.86042 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.18 7.74 37.16 0.29 -0.90 16 2 C 0.12 0.84 2.77 -66.79 -0.18 0.65 16 3 H 0.09 0.49 6.24 -51.93 -0.32 0.17 16 4 C -0.13 -0.95 5.80 -24.90 -0.14 -1.09 16 5 C 0.07 0.77 3.38 -65.57 -0.22 0.54 16 6 H 0.06 0.62 7.83 -51.93 -0.41 0.22 16 7 N -0.66 -9.02 6.04 -105.73 -0.64 -9.66 16 8 C 0.05 0.72 6.03 -4.97 -0.03 0.69 16 9 C 0.45 9.89 7.82 -10.99 -0.09 9.81 16 10 O -0.56 -14.74 15.78 5.54 0.09 -14.65 16 11 N -0.59 -13.83 5.09 -10.96 -0.06 -13.88 16 12 C -0.31 -8.57 10.16 -14.93 -0.15 -8.72 16 13 H 0.12 3.83 7.39 -52.49 -0.39 3.45 16 14 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 15 N -0.88 -25.63 13.96 55.50 0.77 -24.86 16 16 Si 0.88 19.32 27.74 -169.99 -4.71 14.61 16 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 20 C 0.12 1.42 6.58 -2.53 -0.02 1.41 16 21 N -0.61 -6.60 3.09 -164.51 -0.51 -7.11 16 22 C 0.59 8.02 7.59 -12.99 -0.10 7.92 16 23 O -0.52 -9.28 17.30 -8.48 -0.15 -9.43 16 24 C -0.09 -0.97 5.72 -37.81 -0.22 -1.19 16 25 C -0.01 -0.08 7.09 29.24 0.21 0.12 16 26 O -0.30 -2.21 10.47 -30.81 -0.32 -2.53 16 27 C 0.01 0.05 7.30 37.44 0.27 0.33 16 28 C 0.02 0.12 7.31 37.44 0.27 0.39 16 29 O -0.29 -3.30 10.35 -45.05 -0.47 -3.77 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.60 4.05 -52.20 -0.21 0.39 16 32 H 0.07 0.44 8.01 -51.93 -0.42 0.02 16 33 H 0.09 0.50 7.83 -51.93 -0.41 0.10 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.36 4.94 8.14 -39.29 -0.32 4.62 16 36 H 0.05 0.63 8.09 -51.93 -0.42 0.21 16 37 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 39 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.08 1.03 8.11 -51.93 -0.42 0.61 16 42 H 0.21 1.33 2.59 -52.60 -0.14 1.19 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 368.80 15.07 5.56 5.56 Total: -1.00 -37.02 368.80 -6.87 -43.89 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -6.23 Total: 10.84 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: -0.20 Total: 10.99 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -0.43 Total: -55.51 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.85 Total: -30.38 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.71 Total: 14.61 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.02 -6.87 -43.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331953981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.000 kcal (2) G-P(sol) polarization free energy of solvation -37.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds