Wall clock time and date at job start Wed Apr 1 2020 00:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.99796 * 2 1 4 4 C 1.54317 * 109.88706 * 121.09732 * 2 1 3 5 5 C 1.55156 * 103.10516 * 97.31452 * 4 2 1 6 6 H 1.09002 * 111.00354 * 277.34329 * 5 4 2 7 7 N 1.46894 * 111.00651 * 153.48786 * 5 4 2 8 8 C 1.46905 * 110.99927 * 155.00079 * 7 5 4 9 9 C 1.50696 * 109.47085 * 180.02562 * 8 7 5 10 10 O 1.21297 * 120.00292 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00208 * 180.02562 * 9 8 7 12 12 C 1.37096 * 120.00240 * 179.97438 * 11 9 8 13 13 H 1.08001 * 120.00135 * 359.97438 * 12 11 9 14 14 C 1.38953 * 120.00004 * 179.97438 * 12 11 9 15 15 N 1.31406 * 120.00072 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 120.00041 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47607 * 89.99285 * 16 14 12 18 18 H 1.48501 * 109.47282 * 209.99707 * 16 14 12 19 19 H 1.48507 * 109.47031 * 329.99240 * 16 14 12 20 20 C 1.54910 * 101.57850 * 35.41087 * 5 4 2 21 21 N 1.47319 * 109.84891 * 238.70305 * 2 1 3 22 22 C 1.34778 * 125.61587 * 59.50363 * 21 2 1 23 23 O 1.21742 * 119.99818 * 172.87303 * 22 21 2 24 24 C 1.46378 * 120.00308 * 352.87898 * 22 21 2 25 25 C 1.33980 * 119.22821 * 20.11356 * 24 22 21 26 26 O 1.34995 * 121.68675 * 180.12889 * 25 24 22 27 27 C 1.43245 * 116.82808 * 343.30963 * 26 25 24 28 28 C 1.53553 * 108.08700 * 45.25981 * 27 26 25 29 29 O 1.36212 * 119.23414 * 200.38247 * 24 22 21 30 30 H 1.09004 * 109.47432 * 318.30592 * 1 2 3 31 31 H 1.08993 * 109.47552 * 78.30837 * 1 2 3 32 32 H 1.09002 * 109.46617 * 198.30915 * 1 2 3 33 33 H 1.08998 * 110.71853 * 338.86074 * 4 2 1 34 34 H 1.09005 * 110.72043 * 215.76460 * 4 2 1 35 35 H 1.00898 * 110.99803 * 31.04952 * 7 5 4 36 36 H 1.09007 * 109.46949 * 300.00008 * 8 7 5 37 37 H 1.08993 * 109.47124 * 60.00183 * 8 7 5 38 38 H 0.97004 * 120.00098 * 359.97438 * 11 9 8 39 39 H 0.97001 * 120.00620 * 179.97438 * 15 14 12 40 40 H 1.09004 * 110.36245 * 81.83665 * 20 5 4 41 41 H 1.09007 * 110.36781 * 204.04247 * 20 5 4 42 42 H 1.07999 * 119.15504 * 0.36790 * 25 24 22 43 43 H 1.08998 * 109.74168 * 285.60822 * 27 26 25 44 44 H 1.09002 * 109.74184 * 164.90861 * 27 26 25 45 45 H 1.09004 * 109.75118 * 182.21910 * 28 27 26 46 46 H 1.08995 * 109.75630 * 61.47055 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7495 1.2426 5 6 2.3555 -2.1700 0.6957 6 1 1.4503 -2.7765 0.6650 7 7 3.4017 -2.8291 1.4887 8 6 3.2896 -4.2910 1.3968 9 6 4.3764 -4.9310 2.2215 10 8 5.1669 -4.2376 2.8261 11 7 4.4707 -6.2738 2.2866 12 6 5.4597 -6.8561 3.0366 13 1 6.1636 -6.2386 3.5748 14 6 5.5565 -8.2406 3.1041 15 7 6.5048 -8.7987 3.8224 16 14 4.3396 -9.3085 2.1725 17 1 4.8651 -9.5864 0.8117 18 1 4.1466 -10.5888 2.8997 19 1 3.0392 -8.5992 2.0656 20 6 2.8597 -1.8524 -0.7342 21 7 2.0302 -0.7198 -1.1840 22 6 1.7737 -0.3947 -2.4666 23 8 2.3434 -0.9808 -3.3688 24 6 0.8102 0.6633 -2.7749 25 6 0.4993 1.5607 -1.8299 26 8 -0.3845 2.5550 -2.0595 27 6 -0.6954 2.8403 -3.4284 28 6 -0.9362 1.5067 -4.1505 29 8 0.2464 0.7092 -4.0140 30 1 -0.3634 0.7674 0.6836 31 1 -0.3634 0.2082 -1.0063 32 1 -0.3633 -0.9757 0.3229 33 1 1.2919 -0.7890 2.0200 34 1 2.9640 -0.2812 1.6199 35 1 3.3729 -2.5240 2.4500 36 1 2.3159 -4.6051 1.7729 37 1 3.3937 -4.5986 0.3563 38 1 3.8387 -6.8285 1.8029 39 1 6.5722 -9.7651 3.8699 40 1 3.9114 -1.5668 -0.7108 41 1 2.7156 -2.7133 -1.3872 42 1 0.9706 1.4890 -0.8608 43 1 0.1388 3.3654 -3.8936 44 1 -1.5938 3.4552 -3.4815 45 1 -1.1369 1.6904 -5.2060 46 1 -1.7830 0.9905 -3.6981 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331953981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:58 Heat of formation + Delta-G solvation = -94.948663 kcal Electronic energy + Delta-G solvation = -29707.263657 eV Core-core repulsion = 25406.236589 eV Total energy + Delta-G solvation = -4301.027069 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.59046 -41.04698 -40.25844 -39.07919 -37.88708 -36.59155 -35.86016 -33.86138 -33.68460 -32.60481 -31.24025 -29.51547 -27.86952 -27.44985 -25.99674 -25.60184 -23.91014 -21.90324 -21.54824 -21.27819 -20.76635 -20.29145 -19.33880 -18.48406 -18.03459 -17.61892 -17.13883 -16.99871 -16.77008 -16.66992 -16.27898 -15.88913 -15.64637 -15.35853 -15.17673 -15.12136 -14.93167 -14.66641 -14.61194 -14.38140 -14.16181 -13.88061 -13.80581 -13.57031 -13.21933 -13.01447 -12.89044 -12.51633 -12.40853 -12.19684 -11.99307 -11.97488 -11.93548 -11.70867 -11.61691 -11.51322 -11.05885 -10.43416 -10.24438 -9.93163 -9.41358 -9.06793 -8.41031 -6.01636 0.25763 1.29668 1.30337 1.35973 1.44035 1.90884 1.95806 2.22845 2.24059 2.52167 2.76945 3.15424 3.24364 3.39001 3.43032 3.51299 3.60898 3.84302 3.89636 3.96725 4.11645 4.15094 4.20228 4.24236 4.29441 4.42586 4.45376 4.54232 4.61807 4.63710 4.67652 4.83405 4.85451 4.90910 4.99519 5.04036 5.17444 5.33624 5.52992 5.74749 5.90146 6.02109 6.19282 6.35051 6.41981 6.59650 6.88444 6.96780 7.40175 7.96203 8.76431 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025949 B = 0.002057 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.766519 B =13605.764918 C =14107.301097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.111 3.889 3 H 0.113 0.887 4 C -0.119 4.119 5 C 0.082 3.918 6 H 0.082 0.918 7 N -0.672 5.672 8 C 0.061 3.939 9 C 0.450 3.550 10 O -0.612 6.612 11 N -0.592 5.592 12 C -0.327 4.327 13 H 0.057 0.943 14 C -0.016 4.016 15 N -0.934 5.934 16 Si 0.963 3.037 17 H -0.261 1.261 18 H -0.275 1.275 19 H -0.230 1.230 20 C 0.116 3.884 21 N -0.604 5.604 22 C 0.585 3.415 23 O -0.583 6.583 24 C -0.124 4.124 25 C 0.032 3.968 26 O -0.301 6.301 27 C 0.008 3.992 28 C 0.011 3.989 29 O -0.325 6.325 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.358 0.642 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.389 0.611 39 H 0.279 0.721 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.226 0.774 43 H 0.083 0.917 44 H 0.158 0.842 45 H 0.143 0.857 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.009 24.482 -12.099 37.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.009 3.991 3 H 0.130 0.870 4 C -0.157 4.157 5 C -0.029 4.029 6 H 0.099 0.901 7 N -0.306 5.306 8 C -0.072 4.072 9 C 0.238 3.762 10 O -0.496 6.496 11 N -0.234 5.234 12 C -0.456 4.456 13 H 0.075 0.925 14 C -0.214 4.214 15 N -0.574 5.574 16 Si 0.783 3.217 17 H -0.186 1.186 18 H -0.200 1.200 19 H -0.153 1.153 20 C -0.007 4.007 21 N -0.338 5.338 22 C 0.376 3.624 23 O -0.464 6.464 24 C -0.172 4.172 25 C -0.034 4.034 26 O -0.213 6.213 27 C -0.066 4.066 28 C -0.064 4.064 29 O -0.241 6.241 30 H 0.125 0.875 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.136 0.864 34 H 0.112 0.888 35 H 0.180 0.820 36 H 0.102 0.898 37 H 0.124 0.876 38 H 0.225 0.775 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.241 0.759 43 H 0.101 0.899 44 H 0.176 0.824 45 H 0.161 0.839 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -23.672 24.566 -12.683 36.397 hybrid contribution -0.478 -1.421 -0.138 1.505 sum -24.150 23.145 -12.821 35.823 Atomic orbital electron populations 1.22967 0.92722 1.04968 1.04088 1.22302 0.95983 0.96735 0.84033 0.86989 1.22949 1.03783 0.92651 0.96342 1.22607 0.92487 0.95996 0.91773 0.90070 1.59789 1.49030 1.04067 1.17752 1.21706 0.95853 0.88996 1.00610 1.20933 0.88315 0.81956 0.85037 1.90549 1.46272 1.62855 1.49917 1.42050 1.29393 1.06316 1.45611 1.19008 1.08870 0.91348 1.26404 0.92481 1.26102 0.99505 0.97736 0.98091 1.69797 1.34322 1.12118 1.41196 0.85387 0.79304 0.78345 0.78637 1.18576 1.19972 1.15290 1.22237 0.94852 0.88175 0.95418 1.48333 1.50366 1.30835 1.04308 1.17184 0.81464 0.82259 0.81473 1.90823 1.52987 1.55992 1.46602 1.19897 1.06486 1.01411 0.89377 1.25105 0.91703 0.85581 1.00996 1.86163 1.57137 1.49183 1.28787 1.24038 1.05342 0.97202 0.80023 1.23995 0.85672 0.91344 1.05365 1.86345 1.42540 1.69129 1.26058 0.87476 0.91472 0.91111 0.86353 0.88792 0.82037 0.89761 0.87648 0.77537 0.91175 0.91468 0.92003 0.75863 0.89924 0.82421 0.83946 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.54 7.74 71.98 0.56 -0.98 16 2 C 0.11 1.26 2.77 45.28 0.13 1.38 16 3 H 0.11 0.81 6.24 -2.38 -0.01 0.79 16 4 C -0.12 -1.34 5.80 31.78 0.18 -1.15 16 5 C 0.08 1.49 3.38 46.31 0.16 1.64 16 6 H 0.08 1.26 7.83 -2.39 -0.02 1.25 16 7 N -0.67 -17.37 6.04 -488.41 -2.95 -20.31 16 8 C 0.06 1.74 6.03 85.55 0.52 2.26 16 9 C 0.45 19.73 7.82 87.66 0.69 20.42 16 10 O -0.61 -32.96 15.78 -3.08 -0.05 -33.01 16 11 N -0.59 -27.62 5.09 -306.98 -1.56 -29.19 16 12 C -0.33 -19.09 10.16 84.04 0.85 -18.24 16 13 H 0.06 3.96 7.39 -2.91 -0.02 3.94 16 14 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 15 N -0.93 -56.39 13.96 21.66 0.30 -56.09 16 16 Si 0.96 38.98 27.74 68.60 1.90 40.88 16 17 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 18 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 19 H -0.23 -7.74 6.52 99.48 0.65 -7.09 16 20 C 0.12 2.75 6.58 86.86 0.57 3.32 16 21 N -0.60 -12.65 3.09 -792.59 -2.45 -15.10 16 22 C 0.58 16.22 7.59 86.36 0.66 16.87 16 23 O -0.58 -22.29 17.30 8.55 0.15 -22.14 16 24 C -0.12 -2.70 5.72 23.42 0.13 -2.56 16 25 C 0.03 0.44 7.09 66.85 0.47 0.92 16 26 O -0.30 -3.40 10.47 -69.17 -0.72 -4.12 16 27 C 0.01 0.06 7.30 72.17 0.53 0.59 16 28 C 0.01 0.12 7.31 72.17 0.53 0.65 16 29 O -0.33 -7.51 10.35 -72.41 -0.75 -8.26 16 30 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.07 0.79 4.05 -2.64 -0.01 0.78 16 32 H 0.07 0.60 8.01 -2.39 -0.02 0.58 16 33 H 0.12 0.72 7.83 -2.39 -0.02 0.70 16 34 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.36 9.28 8.14 -89.70 -0.73 8.55 16 36 H 0.08 1.87 8.09 -2.38 -0.02 1.85 16 37 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 38 H 0.39 15.08 5.76 -92.71 -0.53 14.54 16 39 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 40 H 0.07 1.83 8.14 -2.38 -0.02 1.82 16 41 H 0.06 1.65 8.11 -2.38 -0.02 1.63 16 42 H 0.23 2.07 2.59 -3.02 -0.01 2.06 16 43 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.16 -0.04 8.14 -2.39 -0.02 -0.06 16 45 H 0.14 0.79 8.14 -2.38 -0.02 0.77 16 46 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -90.29 368.80 0.03 -90.26 By element: Atomic # 1 Polarization: 32.66 SS G_CDS: -0.28 Total: 32.38 kcal Atomic # 6 Polarization: 18.26 SS G_CDS: 6.44 Total: 24.70 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -6.66 Total: -120.69 kcal Atomic # 8 Polarization: -66.16 SS G_CDS: -1.37 Total: -67.53 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 1.90 Total: 40.88 kcal Total: -90.29 0.03 -90.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331953981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.691 kcal (2) G-P(sol) polarization free energy of solvation -90.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds