Wall clock time and date at job start Wed Apr 1 2020 00:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.00044 * 2 1 4 4 C 1.54327 * 109.88252 * 121.09448 * 2 1 3 5 5 C 1.55154 * 103.10486 * 141.69886 * 4 2 1 6 6 H 1.08994 * 111.00621 * 82.48257 * 5 4 2 7 7 N 1.46899 * 111.00597 * 206.33729 * 5 4 2 8 8 C 1.46898 * 111.00169 * 205.00042 * 7 5 4 9 9 C 1.50704 * 109.47081 * 180.02562 * 8 7 5 10 10 O 1.21285 * 119.99879 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99425 * 179.97438 * 9 8 7 12 12 C 1.37106 * 119.99528 * 179.97438 * 11 9 8 13 13 H 1.07999 * 119.99934 * 359.97438 * 12 11 9 14 14 C 1.38946 * 120.00044 * 179.97438 * 12 11 9 15 15 N 1.31407 * 120.00274 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99844 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47123 * 89.99984 * 16 14 12 18 18 H 1.48498 * 109.46978 * 209.99858 * 16 14 12 19 19 H 1.48499 * 109.47269 * 330.00061 * 16 14 12 20 20 C 1.54919 * 101.57808 * 324.40813 * 5 4 2 21 21 N 1.47422 * 104.83028 * 37.01367 * 20 5 4 22 22 C 1.34780 * 125.64722 * 155.91511 * 21 20 5 23 23 O 1.21731 * 119.99663 * 352.90191 * 22 21 20 24 24 C 1.46374 * 119.99812 * 172.90737 * 22 21 20 25 25 C 1.33972 * 119.23398 * 17.09815 * 24 22 21 26 26 O 1.35011 * 121.68709 * 180.34682 * 25 24 22 27 27 C 1.43245 * 116.76415 * 342.82634 * 26 25 24 28 28 C 1.53549 * 108.08694 * 45.48454 * 27 26 25 29 29 O 1.36221 * 119.23005 * 196.83644 * 24 22 21 30 30 H 1.09002 * 109.46978 * 318.13709 * 1 2 3 31 31 H 1.08997 * 109.47082 * 78.13255 * 1 2 3 32 32 H 1.09002 * 109.47135 * 198.13680 * 1 2 3 33 33 H 1.09001 * 110.71592 * 23.24321 * 4 2 1 34 34 H 1.09004 * 110.72092 * 260.15603 * 4 2 1 35 35 H 1.00903 * 110.99750 * 328.95117 * 7 5 4 36 36 H 1.09004 * 109.46879 * 299.99640 * 8 7 5 37 37 H 1.08994 * 109.46951 * 59.99709 * 8 7 5 38 38 H 0.96997 * 120.00728 * 359.97438 * 11 9 8 39 39 H 0.96998 * 120.00112 * 179.97438 * 15 14 12 40 40 H 1.08995 * 110.36382 * 155.84903 * 20 5 4 41 41 H 1.09001 * 110.36421 * 278.05927 * 20 5 4 42 42 H 1.08000 * 119.15972 * 0.33282 * 25 24 22 43 43 H 1.08999 * 109.73558 * 165.13132 * 27 26 25 44 44 H 1.08995 * 109.73740 * 285.79355 * 27 26 25 45 45 H 1.09003 * 109.75402 * 61.47321 * 28 27 26 46 46 H 1.09002 * 109.75209 * 182.21677 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2428 5 6 3.2897 -1.5141 0.6970 6 1 4.1668 -0.8678 0.6653 7 7 3.5556 -2.7205 1.4918 8 6 4.9690 -3.1102 1.4005 9 6 5.2029 -4.3490 2.2261 10 8 4.2828 -4.8570 2.8314 11 7 6.4346 -4.8924 2.2918 12 6 6.6475 -6.0191 3.0434 13 1 5.8284 -6.4710 3.5830 14 6 7.9171 -6.5796 3.1107 15 7 8.1213 -7.6593 3.8314 16 14 9.3340 -5.7976 2.1779 17 1 10.0023 -4.7932 3.0438 18 1 10.3114 -6.8467 1.7916 19 1 8.8148 -5.1310 0.9567 20 6 2.8200 -1.8832 -0.7324 21 7 2.0353 -0.7198 -1.1840 22 6 1.8149 -0.3711 -2.4671 23 8 2.3858 -0.9624 -3.3651 24 6 0.8893 0.7185 -2.7808 25 6 0.5378 1.5771 -1.8142 26 8 -0.3175 2.5955 -2.0469 27 6 -0.5367 2.9537 -3.4164 28 6 -0.7530 1.6621 -4.2182 29 8 0.4095 0.8391 -4.0500 30 1 -0.3633 0.7654 0.6858 31 1 -0.3633 0.2113 -1.0057 32 1 -0.3633 -0.9766 0.3199 33 1 1.3050 -1.4459 1.6183 34 1 2.3499 -0.0460 2.0214 35 1 3.2783 -2.5887 2.4529 36 1 5.2233 -3.3139 0.3603 37 1 5.5942 -2.2998 1.7753 38 1 7.1704 -4.4863 1.8075 39 1 9.0076 -8.0508 3.8782 40 1 3.6787 -2.0382 -1.3856 41 1 2.1967 -2.7771 -0.7079 42 1 0.9490 1.4512 -0.8235 43 1 -1.4200 3.5876 -3.4942 44 1 0.3332 3.4855 -3.8016 45 1 -1.6349 1.1407 -3.8459 46 1 -0.8838 1.9012 -5.2736 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331953983.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:02 Heat of formation + Delta-G solvation = -61.764462 kcal Electronic energy + Delta-G solvation = -29656.725601 eV Core-core repulsion = 25357.137507 eV Total energy + Delta-G solvation = -4299.588094 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.88545 -40.27054 -38.59064 -38.07859 -37.13122 -35.52940 -33.97564 -33.00213 -31.83424 -31.66153 -30.57015 -28.71454 -26.73964 -26.43768 -25.37394 -23.98620 -22.93145 -21.42298 -20.71580 -19.91390 -19.41966 -18.68595 -18.42794 -17.74059 -17.38466 -16.71535 -16.10092 -15.78169 -15.38040 -15.33212 -15.18807 -14.88173 -14.77017 -14.67236 -14.50951 -14.00368 -13.75078 -13.52083 -13.49937 -13.15323 -13.08731 -12.73514 -12.53978 -12.45465 -12.09072 -11.99060 -11.72760 -11.56291 -11.37596 -11.32292 -11.17428 -11.05208 -10.91642 -10.59670 -10.13717 -9.98372 -9.58483 -9.01102 -8.64828 -8.43142 -8.29927 -8.18842 -6.31985 -3.83628 0.99160 2.08431 2.63632 2.94551 3.03336 3.06601 3.15455 3.22400 3.71321 3.82933 3.87641 4.04206 4.09762 4.16246 4.27850 4.35881 4.38393 4.53295 4.54873 4.72056 4.80348 4.84968 4.97605 5.00254 5.04775 5.19255 5.27300 5.28729 5.43687 5.49344 5.55657 5.59074 5.72946 5.75276 5.79938 5.84574 5.93009 5.97137 6.33761 6.88542 6.97411 7.14772 7.44099 7.56627 7.89096 8.12983 8.58094 8.93644 9.41126 9.80398 10.80978 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027181 B = 0.002034 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.887032 B =13760.497388 C =14323.547063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.115 3.885 3 H 0.090 0.910 4 C -0.129 4.129 5 C 0.073 3.927 6 H 0.065 0.935 7 N -0.655 5.655 8 C 0.046 3.954 9 C 0.450 3.550 10 O -0.565 6.565 11 N -0.589 5.589 12 C -0.305 4.305 13 H 0.120 0.880 14 C 0.041 3.959 15 N -0.880 5.880 16 Si 0.879 3.121 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.269 1.269 20 C 0.119 3.881 21 N -0.610 5.610 22 C 0.592 3.408 23 O -0.520 6.520 24 C -0.086 4.086 25 C -0.018 4.018 26 O -0.300 6.300 27 C 0.010 3.990 28 C 0.018 3.982 29 O -0.287 6.287 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.358 0.642 36 H 0.089 0.911 37 H 0.048 0.952 38 H 0.371 0.629 39 H 0.274 0.726 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.214 0.786 43 H 0.121 0.879 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.447 25.917 -11.661 32.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.011 3.989 3 H 0.107 0.893 4 C -0.167 4.167 5 C -0.038 4.038 6 H 0.083 0.917 7 N -0.289 5.289 8 C -0.087 4.087 9 C 0.235 3.765 10 O -0.447 6.447 11 N -0.229 5.229 12 C -0.434 4.434 13 H 0.137 0.863 14 C -0.162 4.162 15 N -0.520 5.520 16 Si 0.706 3.294 17 H -0.197 1.197 18 H -0.201 1.201 19 H -0.194 1.194 20 C -0.003 4.003 21 N -0.346 5.346 22 C 0.381 3.619 23 O -0.396 6.396 24 C -0.135 4.135 25 C -0.082 4.082 26 O -0.213 6.213 27 C -0.065 4.065 28 C -0.058 4.058 29 O -0.201 6.201 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.179 0.821 36 H 0.107 0.893 37 H 0.066 0.934 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.229 0.771 43 H 0.139 0.861 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.857 24.679 -12.272 32.308 hybrid contribution 1.562 1.259 -0.364 2.039 sum -15.295 25.938 -12.636 32.656 Atomic orbital electron populations 1.22979 0.93877 1.04113 1.04094 1.22029 0.95097 0.95831 0.85903 0.89299 1.22978 0.98374 0.99602 0.95764 1.22662 0.96778 0.90833 0.93570 0.91718 1.59901 1.19200 1.32558 1.17226 1.21809 0.88887 0.96688 1.01275 1.19646 0.83547 0.87101 0.86193 1.90567 1.42048 1.63939 1.48130 1.42208 1.08485 1.26902 1.45273 1.19428 0.97497 1.01847 1.24638 0.86250 1.25045 0.97564 0.96191 0.97360 1.69617 1.23165 1.19997 1.39239 0.86673 0.82893 0.79744 0.80106 1.19665 1.20143 1.19409 1.22325 0.95939 0.87702 0.94369 1.48326 1.52972 1.29409 1.03901 1.16664 0.81434 0.82345 0.81408 1.90871 1.49239 1.54472 1.44999 1.20200 1.06141 1.00205 0.86907 1.25189 0.94165 0.86970 1.01901 1.86171 1.59699 1.48289 1.27125 1.23734 1.04228 0.97182 0.81356 1.23682 0.87867 0.91193 1.03020 1.86463 1.43521 1.67135 1.22950 0.90373 0.90268 0.90858 0.88472 0.89421 0.82111 0.89284 0.93415 0.79655 0.91588 0.90030 0.89513 0.77099 0.86096 0.90091 0.90441 0.86062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.22 7.88 37.16 0.29 -0.93 16 2 C 0.11 0.82 2.75 -66.70 -0.18 0.64 16 3 H 0.09 0.47 6.27 -51.93 -0.33 0.14 16 4 C -0.13 -0.94 5.86 -24.90 -0.15 -1.08 16 5 C 0.07 0.74 3.38 -65.56 -0.22 0.52 16 6 H 0.06 0.62 7.83 -51.93 -0.41 0.21 16 7 N -0.66 -8.99 6.04 -105.72 -0.64 -9.63 16 8 C 0.05 0.72 6.03 -4.98 -0.03 0.69 16 9 C 0.45 9.88 7.82 -10.98 -0.09 9.80 16 10 O -0.56 -14.73 15.78 5.55 0.09 -14.64 16 11 N -0.59 -13.82 5.09 -10.96 -0.06 -13.88 16 12 C -0.31 -8.57 10.16 -14.93 -0.15 -8.72 16 13 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 14 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 15 N -0.88 -25.63 13.96 55.50 0.77 -24.86 16 16 Si 0.88 19.31 27.74 -169.99 -4.71 14.60 16 17 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 20 C 0.12 1.41 6.64 -2.53 -0.02 1.40 16 21 N -0.61 -6.61 3.08 -167.51 -0.52 -7.13 16 22 C 0.59 8.05 7.62 -12.99 -0.10 7.95 16 23 O -0.52 -9.31 17.19 -9.00 -0.15 -9.46 16 24 C -0.09 -0.97 5.87 -37.81 -0.22 -1.19 16 25 C -0.02 -0.14 7.17 29.23 0.21 0.07 16 26 O -0.30 -2.24 10.47 -30.86 -0.32 -2.56 16 27 C 0.01 0.05 7.29 37.44 0.27 0.33 16 28 C 0.02 0.12 7.32 37.44 0.27 0.39 16 29 O -0.29 -3.35 10.33 -45.31 -0.47 -3.82 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.61 4.26 -51.93 -0.22 0.38 16 32 H 0.07 0.51 7.68 -51.93 -0.40 0.11 16 33 H 0.10 0.75 7.56 -51.93 -0.39 0.36 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.36 4.91 8.14 -39.29 -0.32 4.59 16 36 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.05 0.63 8.09 -51.93 -0.42 0.21 16 38 H 0.37 7.64 5.76 -40.82 -0.24 7.40 16 39 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.08 1.07 7.97 -51.93 -0.41 0.65 16 41 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.21 1.35 2.25 -56.84 -0.13 1.22 16 43 H 0.12 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 368.35 15.07 5.55 5.55 Total: -1.00 -37.08 368.35 -6.86 -43.94 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -6.20 Total: 11.00 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: -0.20 Total: 10.88 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.44 Total: -55.49 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -0.86 Total: -30.48 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.71 Total: 14.60 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.08 -6.86 -43.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331953983.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.823 kcal (2) G-P(sol) polarization free energy of solvation -37.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds