Wall clock time and date at job start Wed Apr 1 2020 00:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.00044 * 2 1 4 4 C 1.54327 * 109.88252 * 121.09448 * 2 1 3 5 5 C 1.55154 * 103.10486 * 141.69886 * 4 2 1 6 6 H 1.08994 * 111.00621 * 82.48257 * 5 4 2 7 7 N 1.46899 * 111.00597 * 206.33729 * 5 4 2 8 8 C 1.46898 * 111.00169 * 205.00042 * 7 5 4 9 9 C 1.50704 * 109.47081 * 180.02562 * 8 7 5 10 10 O 1.21285 * 119.99879 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99425 * 179.97438 * 9 8 7 12 12 C 1.37106 * 119.99528 * 179.97438 * 11 9 8 13 13 H 1.07999 * 119.99934 * 359.97438 * 12 11 9 14 14 C 1.38946 * 120.00044 * 179.97438 * 12 11 9 15 15 N 1.31407 * 120.00274 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99844 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47123 * 89.99984 * 16 14 12 18 18 H 1.48498 * 109.46978 * 209.99858 * 16 14 12 19 19 H 1.48499 * 109.47269 * 330.00061 * 16 14 12 20 20 C 1.54919 * 101.57808 * 324.40813 * 5 4 2 21 21 N 1.47422 * 104.83028 * 37.01367 * 20 5 4 22 22 C 1.34780 * 125.64722 * 155.91511 * 21 20 5 23 23 O 1.21731 * 119.99663 * 352.90191 * 22 21 20 24 24 C 1.46374 * 119.99812 * 172.90737 * 22 21 20 25 25 C 1.33972 * 119.23398 * 17.09815 * 24 22 21 26 26 O 1.35011 * 121.68709 * 180.34682 * 25 24 22 27 27 C 1.43245 * 116.76415 * 342.82634 * 26 25 24 28 28 C 1.53549 * 108.08694 * 45.48454 * 27 26 25 29 29 O 1.36221 * 119.23005 * 196.83644 * 24 22 21 30 30 H 1.09002 * 109.46978 * 318.13709 * 1 2 3 31 31 H 1.08997 * 109.47082 * 78.13255 * 1 2 3 32 32 H 1.09002 * 109.47135 * 198.13680 * 1 2 3 33 33 H 1.09001 * 110.71592 * 23.24321 * 4 2 1 34 34 H 1.09004 * 110.72092 * 260.15603 * 4 2 1 35 35 H 1.00903 * 110.99750 * 328.95117 * 7 5 4 36 36 H 1.09004 * 109.46879 * 299.99640 * 8 7 5 37 37 H 1.08994 * 109.46951 * 59.99709 * 8 7 5 38 38 H 0.96997 * 120.00728 * 359.97438 * 11 9 8 39 39 H 0.96998 * 120.00112 * 179.97438 * 15 14 12 40 40 H 1.08995 * 110.36382 * 155.84903 * 20 5 4 41 41 H 1.09001 * 110.36421 * 278.05927 * 20 5 4 42 42 H 1.08000 * 119.15972 * 0.33282 * 25 24 22 43 43 H 1.08999 * 109.73558 * 165.13132 * 27 26 25 44 44 H 1.08995 * 109.73740 * 285.79355 * 27 26 25 45 45 H 1.09003 * 109.75402 * 61.47321 * 28 27 26 46 46 H 1.09002 * 109.75209 * 182.21677 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2428 5 6 3.2897 -1.5141 0.6970 6 1 4.1668 -0.8678 0.6653 7 7 3.5556 -2.7205 1.4918 8 6 4.9690 -3.1102 1.4005 9 6 5.2029 -4.3490 2.2261 10 8 4.2828 -4.8570 2.8314 11 7 6.4346 -4.8924 2.2918 12 6 6.6475 -6.0191 3.0434 13 1 5.8284 -6.4710 3.5830 14 6 7.9171 -6.5796 3.1107 15 7 8.1213 -7.6593 3.8314 16 14 9.3340 -5.7976 2.1779 17 1 10.0023 -4.7932 3.0438 18 1 10.3114 -6.8467 1.7916 19 1 8.8148 -5.1310 0.9567 20 6 2.8200 -1.8832 -0.7324 21 7 2.0353 -0.7198 -1.1840 22 6 1.8149 -0.3711 -2.4671 23 8 2.3858 -0.9624 -3.3651 24 6 0.8893 0.7185 -2.7808 25 6 0.5378 1.5771 -1.8142 26 8 -0.3175 2.5955 -2.0469 27 6 -0.5367 2.9537 -3.4164 28 6 -0.7530 1.6621 -4.2182 29 8 0.4095 0.8391 -4.0500 30 1 -0.3633 0.7654 0.6858 31 1 -0.3633 0.2113 -1.0057 32 1 -0.3633 -0.9766 0.3199 33 1 1.3050 -1.4459 1.6183 34 1 2.3499 -0.0460 2.0214 35 1 3.2783 -2.5887 2.4529 36 1 5.2233 -3.3139 0.3603 37 1 5.5942 -2.2998 1.7753 38 1 7.1704 -4.4863 1.8075 39 1 9.0076 -8.0508 3.8782 40 1 3.6787 -2.0382 -1.3856 41 1 2.1967 -2.7771 -0.7079 42 1 0.9490 1.4512 -0.8235 43 1 -1.4200 3.5876 -3.4942 44 1 0.3332 3.4855 -3.8016 45 1 -1.6349 1.1407 -3.8459 46 1 -0.8838 1.9012 -5.2736 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331953983.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:02 Heat of formation + Delta-G solvation = -92.947476 kcal Electronic energy + Delta-G solvation = -29658.077798 eV Core-core repulsion = 25357.137507 eV Total energy + Delta-G solvation = -4300.940291 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.57328 -41.03059 -40.25558 -39.06810 -37.87364 -36.61852 -35.86926 -33.86667 -33.68323 -32.59816 -31.28660 -29.53732 -27.89674 -27.46351 -25.95735 -25.59239 -23.75919 -22.16930 -21.43636 -21.26929 -20.64051 -20.28095 -19.31672 -18.55182 -18.01601 -17.83193 -17.29392 -16.94431 -16.78990 -16.38490 -16.08278 -15.94233 -15.64307 -15.49162 -15.27922 -15.18758 -14.88936 -14.62373 -14.55444 -14.31814 -14.19403 -13.87697 -13.78157 -13.53513 -13.26540 -12.97666 -12.87618 -12.47723 -12.41364 -12.18937 -12.08670 -11.98487 -11.86756 -11.75956 -11.59447 -11.50396 -11.05435 -10.43096 -10.24225 -9.91055 -9.41130 -9.09888 -8.40824 -6.01461 0.24893 1.30803 1.31400 1.35397 1.44655 1.92966 1.96480 2.23112 2.24212 2.53368 2.75658 3.15959 3.24208 3.38680 3.41451 3.53137 3.62394 3.77739 3.94972 3.96529 4.07053 4.14926 4.20111 4.25197 4.29027 4.43580 4.45853 4.54418 4.61482 4.64230 4.73370 4.76393 4.83071 4.92408 4.99890 5.08629 5.16456 5.30155 5.53323 5.74566 5.90720 6.02928 6.18742 6.35232 6.42238 6.60040 6.88734 6.97207 7.40575 7.96640 8.76664 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027181 B = 0.002034 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.887032 B =13760.497388 C =14323.547063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.110 3.890 3 H 0.122 0.878 4 C -0.119 4.119 5 C 0.080 3.920 6 H 0.086 0.914 7 N -0.673 5.673 8 C 0.061 3.939 9 C 0.450 3.550 10 O -0.612 6.612 11 N -0.592 5.592 12 C -0.327 4.327 13 H 0.057 0.943 14 C -0.016 4.016 15 N -0.934 5.934 16 Si 0.964 3.036 17 H -0.254 1.254 18 H -0.277 1.277 19 H -0.234 1.234 20 C 0.116 3.884 21 N -0.604 5.604 22 C 0.584 3.416 23 O -0.583 6.583 24 C -0.125 4.125 25 C 0.026 3.974 26 O -0.301 6.301 27 C 0.009 3.991 28 C 0.010 3.990 29 O -0.326 6.326 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.358 0.642 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.389 0.611 39 H 0.279 0.721 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.233 0.767 43 H 0.157 0.843 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.365 30.553 -12.073 36.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.008 3.992 3 H 0.139 0.861 4 C -0.157 4.157 5 C -0.031 4.031 6 H 0.104 0.896 7 N -0.307 5.307 8 C -0.072 4.072 9 C 0.237 3.763 10 O -0.496 6.496 11 N -0.234 5.234 12 C -0.456 4.456 13 H 0.075 0.925 14 C -0.214 4.214 15 N -0.575 5.575 16 Si 0.784 3.216 17 H -0.179 1.179 18 H -0.202 1.202 19 H -0.157 1.157 20 C -0.007 4.007 21 N -0.339 5.339 22 C 0.376 3.624 23 O -0.465 6.465 24 C -0.173 4.173 25 C -0.040 4.040 26 O -0.213 6.213 27 C -0.066 4.066 28 C -0.065 4.065 29 O -0.241 6.241 30 H 0.128 0.872 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.140 0.860 35 H 0.180 0.820 36 H 0.123 0.877 37 H 0.105 0.895 38 H 0.225 0.775 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.248 0.752 43 H 0.175 0.825 44 H 0.103 0.897 45 H 0.099 0.901 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.822 29.372 -12.658 36.137 hybrid contribution 1.301 -0.173 -0.174 1.324 sum -15.521 29.199 -12.831 35.470 Atomic orbital electron populations 1.22952 0.93093 1.04805 1.03891 1.22376 0.95771 0.96903 0.84135 0.86100 1.23000 0.96643 0.99760 0.96311 1.22642 0.98861 0.89848 0.91699 0.89647 1.59778 1.18186 1.35072 1.17699 1.21709 0.90825 0.94075 1.00556 1.20948 0.82209 0.88070 0.85023 1.90546 1.43491 1.65689 1.49913 1.42054 1.09878 1.26004 1.45448 1.19008 0.96524 1.04042 1.26072 0.92513 1.26105 1.00780 0.96434 0.98120 1.69799 1.24426 1.22053 1.41182 0.85380 0.77638 0.78973 0.79639 1.17859 1.20242 1.15734 1.22234 0.95178 0.87772 0.95561 1.48366 1.52225 1.29023 1.04288 1.17185 0.81238 0.82491 0.81497 1.90815 1.51801 1.56950 1.46888 1.19948 1.08139 1.01290 0.87903 1.25430 0.91687 0.85377 1.01492 1.86175 1.58911 1.47416 1.28785 1.24028 1.06034 0.96817 0.79696 1.24009 0.86435 0.91207 1.04824 1.86385 1.45412 1.68779 1.23541 0.87215 0.91622 0.91733 0.89022 0.86019 0.82038 0.87738 0.89545 0.77522 0.91182 0.91813 0.91700 0.75222 0.82501 0.89726 0.90112 0.83925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.83 7.88 71.98 0.57 -1.26 16 2 C 0.11 1.21 2.75 45.25 0.12 1.34 16 3 H 0.12 0.64 6.27 -2.38 -0.01 0.63 16 4 C -0.12 -1.30 5.86 31.78 0.19 -1.12 16 5 C 0.08 1.42 3.38 46.31 0.16 1.58 16 6 H 0.09 1.25 7.83 -2.39 -0.02 1.23 16 7 N -0.67 -17.30 6.04 -488.40 -2.95 -20.25 16 8 C 0.06 1.73 6.03 85.56 0.52 2.25 16 9 C 0.45 19.71 7.82 87.66 0.69 20.39 16 10 O -0.61 -32.99 15.78 -3.05 -0.05 -33.04 16 11 N -0.59 -27.62 5.09 -306.99 -1.56 -29.18 16 12 C -0.33 -19.10 10.16 84.04 0.85 -18.25 16 13 H 0.06 3.94 7.39 -2.91 -0.02 3.92 16 14 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 15 N -0.93 -56.41 13.96 21.66 0.30 -56.11 16 16 Si 0.96 38.97 27.74 68.60 1.90 40.87 16 17 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 18 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 19 H -0.23 -8.07 6.52 99.48 0.65 -7.42 16 20 C 0.12 2.73 6.64 86.86 0.58 3.30 16 21 N -0.60 -12.63 3.08 -802.09 -2.47 -15.10 16 22 C 0.58 16.25 7.62 86.36 0.66 16.91 16 23 O -0.58 -22.27 17.19 9.10 0.16 -22.12 16 24 C -0.12 -2.76 5.87 23.42 0.14 -2.62 16 25 C 0.03 0.36 7.17 66.85 0.48 0.84 16 26 O -0.30 -3.43 10.47 -69.34 -0.73 -4.16 16 27 C 0.01 0.06 7.29 72.17 0.53 0.59 16 28 C 0.01 0.11 7.32 72.17 0.53 0.64 16 29 O -0.33 -7.69 10.33 -72.30 -0.75 -8.44 16 30 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.07 0.86 4.26 -2.39 -0.01 0.85 16 32 H 0.06 0.77 7.68 -2.39 -0.02 0.75 16 33 H 0.09 1.17 7.56 -2.39 -0.02 1.15 16 34 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.36 9.22 8.14 -89.69 -0.73 8.49 16 36 H 0.10 2.74 8.14 -2.38 -0.02 2.72 16 37 H 0.09 1.88 8.09 -2.39 -0.02 1.86 16 38 H 0.39 15.08 5.76 -92.71 -0.53 14.54 16 39 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 40 H 0.06 1.71 7.97 -2.39 -0.02 1.69 16 41 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.23 2.01 2.25 -7.00 -0.02 2.00 16 43 H 0.16 -0.01 8.14 -2.39 -0.02 -0.03 16 44 H 0.08 0.60 8.14 -2.39 -0.02 0.59 16 45 H 0.08 0.81 8.14 -2.39 -0.02 0.80 16 46 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -90.85 368.35 0.04 -90.81 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: -0.28 Total: 32.52 kcal Atomic # 6 Polarization: 17.73 SS G_CDS: 6.46 Total: 24.19 kcal Atomic # 7 Polarization: -113.96 SS G_CDS: -6.68 Total: -120.64 kcal Atomic # 8 Polarization: -66.39 SS G_CDS: -1.37 Total: -67.75 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 1.90 Total: 40.87 kcal Total: -90.85 0.04 -90.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331953983.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.138 kcal (2) G-P(sol) polarization free energy of solvation -90.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds