Wall clock time and date at job start Tue Mar 31 2020 22:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47384 * 2 1 4 4 C 1.52999 * 109.47176 * 239.99448 * 2 1 3 5 5 O 1.45201 * 109.46945 * 120.00013 * 2 1 3 6 6 C 1.34634 * 117.00271 * 59.99730 * 5 2 1 7 7 O 1.21508 * 119.99935 * 359.97438 * 6 5 2 8 8 N 1.34783 * 120.00202 * 179.97438 * 6 5 2 9 9 C 1.47526 * 125.66717 * 359.96183 * 8 6 5 10 10 C 1.55123 * 104.96102 * 203.95063 * 9 8 6 11 11 C 1.53981 * 101.47022 * 324.16497 * 10 9 8 12 12 C 1.52851 * 111.25640 * 154.84128 * 11 10 9 13 13 C 1.51524 * 103.79377 * 121.27535 * 12 11 10 14 14 O 1.21284 * 125.62804 * 180.26489 * 13 12 11 15 15 N 1.34260 * 108.74624 * 0.38854 * 13 12 11 16 16 N 1.39746 * 112.98441 * 359.58132 * 15 13 12 17 17 C 1.34775 * 125.60978 * 180.24599 * 16 15 13 18 18 O 1.21686 * 120.00002 * 178.56156 * 17 16 15 19 19 C 1.46376 * 119.99931 * 358.57229 * 17 16 15 20 20 H 1.07993 * 119.99735 * 6.84114 * 19 17 16 21 21 C 1.40040 * 119.99821 * 186.84853 * 19 17 16 22 22 N 1.30671 * 120.00312 * 6.78090 * 21 19 17 23 23 Si 1.86808 * 120.00003 * 186.78688 * 21 19 17 24 24 H 1.48494 * 109.47083 * 84.98684 * 23 21 19 25 25 H 1.48495 * 109.47299 * 204.99133 * 23 21 19 26 26 H 1.48505 * 109.46636 * 324.98598 * 23 21 19 27 27 C 1.47315 * 125.67107 * 179.97438 * 8 6 5 28 28 H 1.09005 * 109.46837 * 300.00455 * 1 2 3 29 29 H 1.08997 * 109.47042 * 59.99879 * 1 2 3 30 30 H 1.08997 * 109.47581 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47200 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.46769 * 299.99802 * 3 2 1 33 33 H 1.08996 * 109.46931 * 59.99862 * 3 2 1 34 34 H 1.08997 * 109.47080 * 300.00570 * 4 2 1 35 35 H 1.09002 * 109.46676 * 59.99919 * 4 2 1 36 36 H 1.08993 * 109.47496 * 180.02562 * 4 2 1 37 37 H 1.09000 * 110.34387 * 322.81986 * 9 8 6 38 38 H 1.08999 * 110.34312 * 84.97947 * 9 8 6 39 39 H 1.09001 * 111.02680 * 206.11985 * 10 9 8 40 40 H 1.09000 * 111.03084 * 82.21172 * 10 9 8 41 41 H 1.09001 * 110.56534 * 240.07542 * 12 11 10 42 42 H 1.09007 * 110.56034 * 2.77689 * 12 11 10 43 43 H 0.97004 * 123.50876 * 179.84791 * 15 13 12 44 44 H 0.97006 * 119.99921 * 180.02562 * 22 21 19 45 45 H 1.09002 * 109.96581 * 58.71445 * 27 8 6 46 46 H 1.08999 * 109.99850 * 297.48227 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9507 -2.5094 0.5042 8 7 2.0679 -2.6657 2.4168 9 6 2.9193 -2.1407 3.5012 10 6 3.5996 -3.3913 4.1173 11 6 2.4753 -4.4375 4.0061 12 6 3.0414 -5.8566 3.9596 13 6 2.4040 -6.5391 5.1529 14 8 2.5881 -7.6894 5.4905 15 7 1.5998 -5.6611 5.7734 16 7 1.5900 -4.4041 5.1628 17 6 0.8784 -3.3366 5.5758 18 8 0.9667 -2.2792 4.9802 19 6 -0.0005 -3.4493 6.7409 20 1 0.0036 -4.3509 7.3352 21 6 -0.8469 -2.3878 7.0847 22 7 -0.9508 -1.3525 6.2942 23 14 -1.8273 -2.4519 8.6735 24 1 -0.9871 -1.9580 9.7938 25 1 -3.0342 -1.5962 8.5453 26 1 -2.2401 -3.8525 8.9442 27 6 1.7480 -4.0738 2.7084 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6766 -1.7490 -1.2491 35 1 1.6766 -0.2076 -2.1392 36 1 3.1299 -0.7218 -1.2490 37 1 3.6700 -1.4609 3.0982 38 1 2.3104 -1.6320 4.2485 39 1 3.8695 -3.2165 5.1588 40 1 4.4707 -3.6900 3.5341 41 1 2.7550 -6.3529 3.0324 42 1 4.1263 -5.8395 4.0642 43 1 1.0825 -5.8758 6.5654 44 1 -1.5368 -0.6171 6.5325 45 1 2.0966 -4.7108 1.8954 46 1 0.6723 -4.1924 2.8386 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001418387247.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:06 Heat of formation + Delta-G solvation = -86.212905 kcal Electronic energy + Delta-G solvation = -31875.442135 eV Core-core repulsion = 27574.793877 eV Total energy + Delta-G solvation = -4300.648258 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.00386 -40.14280 -38.23135 -37.01407 -36.02519 -35.43371 -33.79031 -32.86417 -31.89168 -29.94738 -29.30863 -27.31319 -27.21529 -26.83429 -26.45914 -23.25956 -21.92475 -21.32338 -20.77671 -19.22596 -19.03682 -17.95659 -17.41070 -16.62493 -16.26092 -15.94540 -15.56583 -15.33486 -15.00407 -14.79989 -14.59491 -14.26571 -14.02427 -13.78033 -13.49938 -13.40892 -12.88549 -12.76381 -12.61269 -12.40753 -12.28932 -12.21603 -11.98628 -11.75561 -11.66399 -11.55956 -11.39448 -11.21887 -11.13337 -11.05266 -10.99993 -10.87930 -10.73044 -10.44158 -10.09574 -10.05170 -9.68152 -9.60893 -9.12938 -8.45458 -7.66357 -7.20774 -6.55857 -5.01971 2.48035 2.75615 2.81965 2.97832 3.06484 3.08498 3.34333 3.88823 4.10050 4.28746 4.36311 4.64902 4.72318 4.76609 4.86323 4.89891 5.04409 5.09401 5.38409 5.52062 5.52719 5.60643 5.63857 5.67447 5.73182 5.74656 5.77157 5.87936 5.98358 6.00468 6.07133 6.13303 6.14279 6.29372 6.40143 6.52007 6.65016 6.78334 6.82888 7.00181 7.13443 7.48253 7.77177 7.90771 8.00571 8.37868 8.67806 8.80475 9.19647 10.11364 10.33765 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010025 B = 0.004669 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.418133 B = 5995.497391 C = 8139.940436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.136 3.864 3 C -0.139 4.139 4 C -0.181 4.181 5 O -0.358 6.358 6 C 0.672 3.328 7 O -0.585 6.585 8 N -0.579 5.579 9 C 0.076 3.924 10 C -0.131 4.131 11 C 0.158 3.842 12 C -0.150 4.150 13 C 0.517 3.483 14 O -0.546 6.546 15 N -0.501 5.501 16 N -0.433 5.433 17 C 0.572 3.428 18 O -0.532 6.532 19 C -0.536 4.536 20 H 0.070 0.930 21 C 0.092 3.908 22 N -0.757 5.757 23 Si 0.913 3.087 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.264 1.264 27 C 0.138 3.862 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.146 0.854 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.426 0.574 44 H 0.275 0.725 45 H 0.073 0.927 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.822 1.903 -7.881 10.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.238 4.238 5 O -0.272 6.272 6 C 0.427 3.573 7 O -0.476 6.476 8 N -0.318 5.318 9 C -0.045 4.045 10 C -0.170 4.170 11 C 0.071 3.929 12 C -0.190 4.190 13 C 0.301 3.699 14 O -0.424 6.424 15 N -0.249 5.249 16 N -0.267 5.267 17 C 0.382 3.618 18 O -0.410 6.410 19 C -0.572 4.572 20 H 0.088 0.912 21 C -0.131 4.131 22 N -0.384 5.384 23 Si 0.737 3.263 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.188 1.188 27 C 0.015 3.985 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.162 0.838 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.271 0.729 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.603 2.205 -8.502 10.989 hybrid contribution -0.824 -0.088 1.068 1.352 sum 5.780 2.118 -7.433 9.651 Atomic orbital electron populations 1.22495 0.94128 1.05176 1.02164 1.21960 0.94428 0.91381 0.82345 1.21833 1.01925 0.92939 1.02936 1.22506 1.01197 1.03620 0.96508 1.86319 1.71449 1.23719 1.45761 1.17304 0.78603 0.80166 0.81214 1.90836 1.42107 1.70714 1.43949 1.46771 1.52396 1.11797 1.20815 1.23460 0.93598 0.96127 0.91275 1.23032 0.96220 0.95302 1.02487 1.20767 0.90638 0.94592 0.86926 1.22393 1.02899 0.94003 0.99733 1.20230 0.79695 0.84950 0.85030 1.90767 1.65140 1.15819 1.70641 1.45256 1.45775 1.04304 1.29592 1.48798 1.49915 1.01442 1.26594 1.18278 0.78841 0.79564 0.85073 1.90332 1.65996 1.25180 1.59463 1.20754 1.22812 1.02917 1.10742 0.91165 1.25665 0.95684 0.94289 0.97443 1.69921 1.29182 1.05446 1.33813 0.86273 0.79114 0.79265 0.81633 1.19341 1.20273 1.18780 1.22018 1.01152 0.80455 0.94884 0.91936 0.91703 0.89352 0.91736 0.90528 0.91349 0.89370 0.91570 0.92490 0.92552 0.83770 0.89273 0.90355 0.86986 0.86787 0.72896 0.91375 0.90874 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.72 8.37 37.16 0.31 -2.41 16 2 C 0.14 1.97 1.13 -90.62 -0.10 1.87 16 3 C -0.14 -1.56 8.85 37.16 0.33 -1.23 16 4 C -0.18 -2.36 8.37 37.16 0.31 -2.05 16 5 O -0.36 -6.44 9.42 -40.31 -0.38 -6.82 16 6 C 0.67 13.23 7.93 54.06 0.43 13.66 16 7 O -0.58 -12.14 12.21 -19.28 -0.24 -12.37 16 8 N -0.58 -10.97 3.06 -176.57 -0.54 -11.51 16 9 C 0.08 1.36 6.03 -2.36 -0.01 1.35 16 10 C -0.13 -1.97 5.89 -25.10 -0.15 -2.12 16 11 C 0.16 2.59 1.06 -131.74 -0.14 2.45 16 12 C -0.15 -2.03 6.25 -27.55 -0.17 -2.20 16 13 C 0.52 8.65 8.65 -10.81 -0.09 8.56 16 14 O -0.55 -10.50 18.03 5.55 0.10 -10.40 16 15 N -0.50 -8.89 6.56 31.34 0.21 -8.68 16 16 N -0.43 -8.50 3.46 -48.99 -0.17 -8.67 16 17 C 0.57 13.73 7.41 -12.99 -0.10 13.64 16 18 O -0.53 -13.81 10.20 5.20 0.05 -13.76 16 19 C -0.54 -13.15 9.20 -35.63 -0.33 -13.47 16 20 H 0.07 1.58 6.66 -52.49 -0.35 1.23 16 21 C 0.09 2.25 5.48 -17.37 -0.10 2.16 16 22 N -0.76 -20.03 11.91 55.55 0.66 -19.36 16 23 Si 0.91 18.29 29.56 -169.99 -5.03 13.27 16 24 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 25 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 26 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 27 C 0.14 2.45 5.65 -3.52 -0.02 2.43 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 1.56 5.88 -51.93 -0.31 1.26 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.36 5.88 -51.93 -0.31 1.06 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.91 8.05 -51.93 -0.42 0.49 16 38 H 0.15 3.20 4.54 -55.07 -0.25 2.95 16 39 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.08 0.94 7.90 -51.93 -0.41 0.53 16 41 H 0.11 1.31 7.41 -51.93 -0.38 0.93 16 42 H 0.11 1.27 7.62 -51.93 -0.40 0.87 16 43 H 0.43 7.31 7.62 -182.86 -1.39 5.91 16 44 H 0.28 6.71 8.29 -40.82 -0.34 6.37 16 45 H 0.07 1.11 7.48 -51.93 -0.39 0.72 16 46 H 0.08 1.60 8.03 -51.93 -0.42 1.18 16 LS Contribution 366.49 15.07 5.52 5.52 Total: -1.00 -31.00 366.49 -7.17 -38.17 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -7.53 Total: 12.00 kcal Atomic # 6 Polarization: 22.46 SS G_CDS: 0.17 Total: 22.63 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.16 Total: -48.23 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -0.46 Total: -43.36 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.00 -7.17 -38.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001418387247.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.044 kcal (2) G-P(sol) polarization free energy of solvation -31.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds