Wall clock time and date at job start Tue Mar 31 2020 22:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47384 * 2 1 4 4 C 1.52999 * 109.47176 * 239.99448 * 2 1 3 5 5 O 1.45201 * 109.46945 * 120.00013 * 2 1 3 6 6 C 1.34634 * 117.00271 * 59.99730 * 5 2 1 7 7 O 1.21508 * 119.99935 * 359.97438 * 6 5 2 8 8 N 1.34783 * 120.00202 * 179.97438 * 6 5 2 9 9 C 1.47526 * 125.66717 * 359.96183 * 8 6 5 10 10 C 1.55123 * 104.96102 * 203.95063 * 9 8 6 11 11 C 1.53981 * 101.47022 * 324.16497 * 10 9 8 12 12 C 1.52851 * 111.25640 * 154.84128 * 11 10 9 13 13 C 1.51524 * 103.79377 * 121.27535 * 12 11 10 14 14 O 1.21284 * 125.62804 * 180.26489 * 13 12 11 15 15 N 1.34260 * 108.74624 * 0.38854 * 13 12 11 16 16 N 1.39746 * 112.98441 * 359.58132 * 15 13 12 17 17 C 1.34775 * 125.60978 * 180.24599 * 16 15 13 18 18 O 1.21686 * 120.00002 * 178.56156 * 17 16 15 19 19 C 1.46376 * 119.99931 * 358.57229 * 17 16 15 20 20 H 1.07993 * 119.99735 * 6.84114 * 19 17 16 21 21 C 1.40040 * 119.99821 * 186.84853 * 19 17 16 22 22 N 1.30671 * 120.00312 * 6.78090 * 21 19 17 23 23 Si 1.86808 * 120.00003 * 186.78688 * 21 19 17 24 24 H 1.48494 * 109.47083 * 84.98684 * 23 21 19 25 25 H 1.48495 * 109.47299 * 204.99133 * 23 21 19 26 26 H 1.48505 * 109.46636 * 324.98598 * 23 21 19 27 27 C 1.47315 * 125.67107 * 179.97438 * 8 6 5 28 28 H 1.09005 * 109.46837 * 300.00455 * 1 2 3 29 29 H 1.08997 * 109.47042 * 59.99879 * 1 2 3 30 30 H 1.08997 * 109.47581 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47200 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.46769 * 299.99802 * 3 2 1 33 33 H 1.08996 * 109.46931 * 59.99862 * 3 2 1 34 34 H 1.08997 * 109.47080 * 300.00570 * 4 2 1 35 35 H 1.09002 * 109.46676 * 59.99919 * 4 2 1 36 36 H 1.08993 * 109.47496 * 180.02562 * 4 2 1 37 37 H 1.09000 * 110.34387 * 322.81986 * 9 8 6 38 38 H 1.08999 * 110.34312 * 84.97947 * 9 8 6 39 39 H 1.09001 * 111.02680 * 206.11985 * 10 9 8 40 40 H 1.09000 * 111.03084 * 82.21172 * 10 9 8 41 41 H 1.09001 * 110.56534 * 240.07542 * 12 11 10 42 42 H 1.09007 * 110.56034 * 2.77689 * 12 11 10 43 43 H 0.97004 * 123.50876 * 179.84791 * 15 13 12 44 44 H 0.97006 * 119.99921 * 180.02562 * 22 21 19 45 45 H 1.09002 * 109.96581 * 58.71445 * 27 8 6 46 46 H 1.08999 * 109.99850 * 297.48227 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9507 -2.5094 0.5042 8 7 2.0679 -2.6657 2.4168 9 6 2.9193 -2.1407 3.5012 10 6 3.5996 -3.3913 4.1173 11 6 2.4753 -4.4375 4.0061 12 6 3.0414 -5.8566 3.9596 13 6 2.4040 -6.5391 5.1529 14 8 2.5881 -7.6894 5.4905 15 7 1.5998 -5.6611 5.7734 16 7 1.5900 -4.4041 5.1628 17 6 0.8784 -3.3366 5.5758 18 8 0.9667 -2.2792 4.9802 19 6 -0.0005 -3.4493 6.7409 20 1 0.0036 -4.3509 7.3352 21 6 -0.8469 -2.3878 7.0847 22 7 -0.9508 -1.3525 6.2942 23 14 -1.8273 -2.4519 8.6735 24 1 -0.9871 -1.9580 9.7938 25 1 -3.0342 -1.5962 8.5453 26 1 -2.2401 -3.8525 8.9442 27 6 1.7480 -4.0738 2.7084 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6766 -1.7490 -1.2491 35 1 1.6766 -0.2076 -2.1392 36 1 3.1299 -0.7218 -1.2490 37 1 3.6700 -1.4609 3.0982 38 1 2.3104 -1.6320 4.2485 39 1 3.8695 -3.2165 5.1588 40 1 4.4707 -3.6900 3.5341 41 1 2.7550 -6.3529 3.0324 42 1 4.1263 -5.8395 4.0642 43 1 1.0825 -5.8758 6.5654 44 1 -1.5368 -0.6171 6.5325 45 1 2.0966 -4.7108 1.8954 46 1 0.6723 -4.1924 2.8386 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001418387247.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:05 Heat of formation + Delta-G solvation = -108.335684 kcal Electronic energy + Delta-G solvation = -31876.401450 eV Core-core repulsion = 27574.793877 eV Total energy + Delta-G solvation = -4301.607573 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.42759 -41.53176 -39.67300 -38.56461 -37.58394 -36.94128 -35.04472 -34.72801 -33.25100 -31.48390 -30.67399 -28.50248 -28.36041 -28.27835 -27.98512 -24.63888 -23.50927 -22.64912 -22.18297 -20.67261 -20.35703 -19.60997 -18.83611 -18.31319 -17.61190 -17.37470 -17.08905 -16.80001 -16.39390 -16.22512 -16.10752 -15.58652 -15.40681 -15.18399 -14.92288 -14.70755 -14.33324 -14.13967 -13.99715 -13.65664 -13.57202 -13.31774 -13.24780 -13.07885 -12.95262 -12.87213 -12.83830 -12.70450 -12.61083 -12.46400 -12.32189 -12.21663 -12.19232 -11.95641 -11.51781 -11.35353 -11.08470 -11.01359 -10.96877 -10.11833 -9.32309 -8.78219 -8.39288 -6.93182 1.12292 1.27953 1.36234 1.41100 1.50028 1.53135 1.84911 2.20653 2.32879 2.96962 3.09506 3.25692 3.34694 3.46162 3.66719 3.77390 3.78882 3.82187 3.96770 4.23431 4.39628 4.49989 4.54293 4.56444 4.59534 4.62126 4.73691 4.76180 4.83357 4.86830 4.88156 4.88985 4.97783 5.09636 5.19862 5.26049 5.29331 5.37484 5.41163 5.48328 5.51118 5.82578 6.09238 6.29361 6.53935 6.79253 6.90782 7.33307 7.57501 8.30374 8.51974 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010025 B = 0.004669 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.418133 B = 5995.497391 C = 8139.940436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.120 3.880 3 C -0.133 4.133 4 C -0.173 4.173 5 O -0.369 6.369 6 C 0.663 3.337 7 O -0.603 6.603 8 N -0.584 5.584 9 C 0.078 3.922 10 C -0.117 4.117 11 C 0.154 3.846 12 C -0.134 4.134 13 C 0.520 3.480 14 O -0.568 6.568 15 N -0.506 5.506 16 N -0.437 5.437 17 C 0.563 3.437 18 O -0.558 6.558 19 C -0.564 4.564 20 H 0.083 0.917 21 C 0.044 3.956 22 N -0.807 5.807 23 Si 0.987 3.013 24 H -0.262 1.262 25 H -0.277 1.277 26 H -0.254 1.254 27 C 0.138 3.862 28 H 0.044 0.956 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.125 0.875 41 H 0.139 0.861 42 H 0.153 0.847 43 H 0.425 0.575 44 H 0.277 0.723 45 H 0.104 0.896 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.661 1.406 -8.634 12.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.084 3.916 3 C -0.190 4.190 4 C -0.230 4.230 5 O -0.284 6.284 6 C 0.418 3.582 7 O -0.496 6.496 8 N -0.323 5.323 9 C -0.043 4.043 10 C -0.156 4.156 11 C 0.068 3.932 12 C -0.174 4.174 13 C 0.306 3.694 14 O -0.447 6.447 15 N -0.254 5.254 16 N -0.269 5.269 17 C 0.371 3.629 18 O -0.438 6.438 19 C -0.600 4.600 20 H 0.102 0.898 21 C -0.173 4.173 22 N -0.435 5.435 23 Si 0.808 3.192 24 H -0.186 1.186 25 H -0.202 1.202 26 H -0.177 1.177 27 C 0.014 3.986 28 H 0.063 0.937 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.127 0.873 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.117 0.883 39 H 0.103 0.897 40 H 0.143 0.857 41 H 0.157 0.843 42 H 0.171 0.829 43 H 0.269 0.731 44 H 0.087 0.913 45 H 0.122 0.878 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.475 1.680 -9.264 12.668 hybrid contribution -1.405 0.064 1.223 1.864 sum 7.070 1.744 -8.041 10.849 Atomic orbital electron populations 1.22455 0.94984 1.03167 1.02981 1.22466 0.94070 0.93109 0.81982 1.21867 1.02587 0.90498 1.04016 1.22422 1.01762 1.02021 0.96771 1.86328 1.71545 1.22882 1.47603 1.17565 0.78503 0.80729 0.81374 1.90820 1.42780 1.71258 1.44727 1.46953 1.52354 1.12288 1.20674 1.23237 0.93193 0.97738 0.90172 1.23048 0.96793 0.93000 1.02760 1.21036 0.90282 0.97054 0.84830 1.22510 1.04678 0.91050 0.99127 1.20664 0.78960 0.84363 0.85404 1.90766 1.65801 1.16740 1.71434 1.45335 1.46389 1.03784 1.29845 1.48337 1.49732 1.01414 1.27373 1.18312 0.79249 0.80189 0.85116 1.90398 1.66809 1.26574 1.60058 1.21245 1.23316 1.03720 1.11719 0.89846 1.26674 0.96434 0.93579 1.00644 1.70060 1.30746 1.06588 1.36146 0.85158 0.77381 0.79590 0.77113 1.18612 1.20155 1.17708 1.22098 0.98987 0.80706 0.96772 0.93650 0.88298 0.92659 0.90691 0.87341 0.92347 0.92175 0.88653 0.91444 0.90898 0.88264 0.89693 0.85732 0.84314 0.82921 0.73108 0.91274 0.87796 0.94649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.40 8.37 71.98 0.60 -4.80 16 2 C 0.12 3.40 1.13 -10.80 -0.01 3.39 16 3 C -0.13 -2.73 8.85 71.98 0.64 -2.09 16 4 C -0.17 -4.23 8.37 71.98 0.60 -3.63 16 5 O -0.37 -13.47 9.42 -55.43 -0.52 -13.99 16 6 C 0.66 26.73 7.93 129.79 1.03 27.76 16 7 O -0.60 -25.85 12.21 19.81 0.24 -25.61 16 8 N -0.58 -22.35 3.06 -942.96 -2.89 -25.24 16 9 C 0.08 2.78 6.03 86.91 0.52 3.31 16 10 C -0.12 -3.26 5.89 31.65 0.19 -3.07 16 11 C 0.15 4.82 1.06 4.08 0.00 4.82 16 12 C -0.13 -3.13 6.25 30.06 0.19 -2.94 16 13 C 0.52 16.34 8.65 88.00 0.76 17.10 16 14 O -0.57 -20.76 18.03 -3.04 -0.05 -20.81 16 15 N -0.51 -17.66 6.56 -173.42 -1.14 -18.80 16 16 N -0.44 -17.19 3.46 -427.12 -1.48 -18.67 16 17 C 0.56 27.99 7.41 86.36 0.64 28.63 16 18 O -0.56 -30.54 10.20 -4.31 -0.04 -30.58 16 19 C -0.56 -28.44 9.20 24.83 0.23 -28.21 16 20 H 0.08 3.81 6.66 -2.91 -0.02 3.79 16 21 C 0.04 2.24 5.48 85.30 0.47 2.71 16 22 N -0.81 -44.74 11.91 21.83 0.26 -44.48 16 23 Si 0.99 38.16 29.56 68.60 2.03 40.19 16 24 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 25 H -0.28 -10.52 7.11 99.48 0.71 -9.81 16 26 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 27 C 0.14 4.83 5.65 86.27 0.49 5.32 16 28 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.05 2.04 5.88 -2.39 -0.01 2.03 16 31 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 1.84 5.88 -2.39 -0.01 1.83 16 35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 2.32 8.05 -2.39 -0.02 2.30 16 38 H 0.10 4.62 4.54 -52.09 -0.24 4.39 16 39 H 0.08 2.48 8.14 -2.39 -0.02 2.47 16 40 H 0.12 2.37 7.90 -2.39 -0.02 2.35 16 41 H 0.14 2.62 7.41 -2.39 -0.02 2.60 16 42 H 0.15 2.51 7.62 -2.38 -0.02 2.50 16 43 H 0.42 14.59 7.62 -213.54 -1.63 12.96 16 44 H 0.28 14.18 8.29 -92.70 -0.77 13.41 16 45 H 0.10 2.96 7.48 -2.39 -0.02 2.94 16 46 H 0.03 1.53 8.03 -2.39 -0.02 1.51 16 Total: -1.00 -72.95 366.49 1.93 -71.02 By element: Atomic # 1 Polarization: 39.52 SS G_CDS: -0.82 Total: 38.69 kcal Atomic # 6 Polarization: 41.93 SS G_CDS: 6.35 Total: 48.28 kcal Atomic # 7 Polarization: -101.94 SS G_CDS: -5.24 Total: -107.18 kcal Atomic # 8 Polarization: -90.62 SS G_CDS: -0.38 Total: -91.00 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.19 kcal Total: -72.95 1.93 -71.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001418387247.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.320 kcal (2) G-P(sol) polarization free energy of solvation -72.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds