Wall clock time and date at job start Tue Mar 31 2020 22:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47460 * 2 1 4 4 C 1.53004 * 109.47340 * 239.99695 * 2 1 3 5 5 O 1.45206 * 109.47298 * 120.00054 * 2 1 3 6 6 C 1.34640 * 116.99831 * 59.99544 * 5 2 1 7 7 O 1.21507 * 119.99990 * 0.02562 * 6 5 2 8 8 N 1.34775 * 119.99672 * 180.02562 * 6 5 2 9 9 C 1.47533 * 125.67425 * 359.69642 * 8 6 5 10 10 C 1.55121 * 104.96845 * 156.34202 * 9 8 6 11 11 C 1.53987 * 101.46286 * 35.83192 * 10 9 8 12 12 C 1.52860 * 111.24429 * 205.15579 * 11 10 9 13 13 C 1.51522 * 103.79614 * 238.51362 * 12 11 10 14 14 O 1.21286 * 125.62974 * 179.97438 * 13 12 11 15 15 N 1.34260 * 108.74605 * 0.02562 * 13 12 11 16 16 N 1.39749 * 112.98419 * 359.97438 * 15 13 12 17 17 C 1.34776 * 125.60777 * 180.02562 * 16 15 13 18 18 O 1.21681 * 120.00318 * 173.48300 * 17 16 15 19 19 C 1.46375 * 119.99690 * 353.48360 * 17 16 15 20 20 H 1.08001 * 120.00495 * 6.75651 * 19 17 16 21 21 C 1.40058 * 119.99885 * 186.76008 * 19 17 16 22 22 N 1.30665 * 119.99786 * 6.80897 * 21 19 17 23 23 Si 1.86793 * 119.99983 * 186.81304 * 21 19 17 24 24 H 1.48502 * 109.47479 * 84.98832 * 23 21 19 25 25 H 1.48500 * 109.47009 * 204.98884 * 23 21 19 26 26 H 1.48506 * 109.47357 * 324.98890 * 23 21 19 27 27 C 1.47324 * 125.66987 * 179.97438 * 8 6 5 28 28 H 1.09001 * 109.47429 * 300.00073 * 1 2 3 29 29 H 1.08997 * 109.47378 * 59.99848 * 1 2 3 30 30 H 1.09007 * 109.47561 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47412 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46692 * 299.99851 * 3 2 1 33 33 H 1.08993 * 109.47017 * 59.99861 * 3 2 1 34 34 H 1.09007 * 109.46877 * 300.00520 * 4 2 1 35 35 H 1.08997 * 109.46964 * 60.00213 * 4 2 1 36 36 H 1.09001 * 109.47152 * 180.02562 * 4 2 1 37 37 H 1.08999 * 110.34175 * 275.21901 * 9 8 6 38 38 H 1.09006 * 110.33994 * 37.47143 * 9 8 6 39 39 H 1.08997 * 111.02705 * 277.79079 * 10 9 8 40 40 H 1.08995 * 111.02289 * 153.87652 * 10 9 8 41 41 H 1.09003 * 110.56567 * 357.09752 * 12 11 10 42 42 H 1.09006 * 110.55760 * 119.94121 * 12 11 10 43 43 H 0.97001 * 123.50659 * 180.02562 * 15 13 12 44 44 H 0.96997 * 120.00099 * 180.02562 * 22 21 19 45 45 H 1.08995 * 109.96438 * 300.99008 * 27 8 6 46 46 H 1.09000 * 109.96191 * 62.24590 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5037 8 7 2.0671 -2.6654 2.4172 9 6 2.9222 -2.1418 3.4995 10 6 2.6141 -3.0421 4.7246 11 6 2.3999 -4.4108 4.0524 12 6 1.5075 -5.3129 4.9048 13 6 2.3705 -6.5303 5.1679 14 8 2.0425 -7.5023 5.8149 15 7 3.5585 -6.3549 4.5675 16 7 3.6537 -5.1354 3.8918 17 6 4.7286 -4.7009 3.2045 18 8 4.6611 -3.6743 2.5548 19 6 5.9771 -5.4642 3.2395 20 1 6.0070 -6.4287 3.7244 21 6 7.1330 -4.9435 2.6442 22 7 7.1339 -3.7238 2.1755 23 14 8.6734 -5.9929 2.5201 24 1 8.5990 -6.8394 1.3022 25 1 9.8667 -5.1127 2.4390 26 1 8.7791 -6.8609 3.7205 27 6 1.7471 -4.0736 2.7089 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6765 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 3.9738 -2.2231 3.2245 38 1 2.6656 -1.1050 3.7171 39 1 1.7097 -2.7114 5.2352 40 1 3.4603 -3.0715 5.4109 41 1 1.2465 -4.8191 5.8408 42 1 0.6089 -5.5923 4.3546 43 1 4.2757 -7.0073 4.5988 44 1 7.9343 -3.3634 1.7629 45 1 0.6670 -4.2034 2.7767 46 1 2.1512 -4.7167 1.9271 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001418387251.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:09 Heat of formation + Delta-G solvation = -89.612353 kcal Electronic energy + Delta-G solvation = -31861.020822 eV Core-core repulsion = 27560.225153 eV Total energy + Delta-G solvation = -4300.795669 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.00199 -40.15032 -38.22686 -37.01567 -36.03060 -35.42534 -33.79929 -32.85733 -31.89436 -29.95119 -29.29792 -27.31958 -27.22840 -26.84879 -26.44575 -23.26734 -21.90286 -21.33215 -20.76584 -19.21579 -19.05010 -17.94306 -17.42326 -16.56878 -16.27542 -15.96625 -15.53656 -15.38472 -15.00250 -14.80558 -14.55221 -14.27037 -14.04297 -13.77739 -13.51085 -13.34644 -12.88734 -12.75107 -12.64853 -12.42629 -12.31443 -12.19852 -11.97614 -11.76406 -11.67291 -11.62571 -11.36318 -11.23374 -11.18621 -11.07075 -10.98863 -10.81378 -10.76014 -10.45025 -10.10650 -10.04024 -9.68848 -9.61956 -9.11511 -8.39465 -7.80737 -7.17499 -6.57366 -5.01190 2.47084 2.75967 2.82405 2.97964 3.06687 3.08330 3.33201 3.88782 4.10087 4.27910 4.36390 4.64395 4.72450 4.76350 4.85390 4.89033 5.03396 5.08910 5.38434 5.51741 5.52095 5.59901 5.62888 5.67168 5.72143 5.74123 5.76857 5.87026 5.97572 5.99213 6.06286 6.12984 6.14443 6.29215 6.39208 6.50158 6.63794 6.79096 6.81810 7.00166 7.12734 7.48195 7.75737 7.90966 7.99306 8.37992 8.67600 8.79278 9.20127 10.09047 10.33109 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010079 B = 0.004628 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.251312 B = 6048.231004 C = 8178.574476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.136 3.864 3 C -0.139 4.139 4 C -0.182 4.182 5 O -0.358 6.358 6 C 0.672 3.328 7 O -0.585 6.585 8 N -0.578 5.578 9 C 0.084 3.916 10 C -0.132 4.132 11 C 0.158 3.842 12 C -0.149 4.149 13 C 0.517 3.483 14 O -0.546 6.546 15 N -0.501 5.501 16 N -0.434 5.434 17 C 0.571 3.429 18 O -0.531 6.531 19 C -0.536 4.536 20 H 0.070 0.930 21 C 0.092 3.908 22 N -0.758 5.758 23 Si 0.913 3.087 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.263 1.263 27 C 0.139 3.861 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.136 0.864 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.426 0.574 44 H 0.275 0.725 45 H 0.073 0.927 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.186 6.750 0.466 10.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.240 4.240 5 O -0.272 6.272 6 C 0.427 3.573 7 O -0.476 6.476 8 N -0.317 5.317 9 C -0.037 4.037 10 C -0.171 4.171 11 C 0.071 3.929 12 C -0.190 4.190 13 C 0.301 3.699 14 O -0.424 6.424 15 N -0.249 5.249 16 N -0.268 5.268 17 C 0.381 3.619 18 O -0.409 6.409 19 C -0.572 4.572 20 H 0.088 0.912 21 C -0.131 4.131 22 N -0.385 5.385 23 Si 0.737 3.263 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.188 1.188 27 C 0.016 3.984 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.153 0.847 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.133 0.867 42 H 0.130 0.870 43 H 0.271 0.729 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.479 7.079 -0.118 11.047 hybrid contribution 1.137 -0.794 -0.156 1.395 sum -7.343 6.285 -0.274 9.669 Atomic orbital electron populations 1.22507 0.94458 1.04946 1.01920 1.21962 0.93930 0.91472 0.82749 1.21833 1.02494 0.92746 1.02573 1.22498 1.01938 1.03444 0.96084 1.86325 1.71479 1.23816 1.45628 1.17303 0.78754 0.80224 0.80979 1.90834 1.43043 1.70697 1.43056 1.46760 1.51821 1.11660 1.21437 1.23203 1.00430 0.95645 0.84392 1.23062 1.02573 0.93751 0.97753 1.20758 0.85259 0.92763 0.94110 1.22397 0.99160 0.95215 1.02240 1.20236 0.82385 0.88177 0.79136 1.90767 1.75446 1.33860 1.42323 1.45259 1.16651 1.13507 1.49503 1.48795 1.14799 1.08358 1.54873 1.18265 0.80162 0.85513 0.77996 1.90483 1.80677 1.26089 1.43649 1.20769 0.92459 1.05046 1.38918 0.91199 1.25657 0.99814 0.94699 0.92886 1.69900 1.28792 1.13453 1.26367 0.86277 0.80181 0.80176 0.79676 1.19395 1.20246 1.18763 1.22008 0.98646 0.81243 0.96514 0.92476 0.91568 0.89367 0.91346 0.90527 0.91712 0.89367 0.91688 0.91967 0.84706 0.92292 0.90265 0.89148 0.86735 0.87022 0.72923 0.91377 0.90900 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 8.37 37.15 0.31 -2.03 16 2 C 0.14 1.96 1.13 -90.62 -0.10 1.85 16 3 C -0.14 -1.56 8.85 37.16 0.33 -1.23 16 4 C -0.18 -2.69 8.37 37.16 0.31 -2.38 16 5 O -0.36 -6.41 9.42 -40.32 -0.38 -6.79 16 6 C 0.67 13.14 7.93 54.05 0.43 13.57 16 7 O -0.58 -12.03 12.21 -19.28 -0.24 -12.27 16 8 N -0.58 -10.88 2.96 -176.57 -0.52 -11.40 16 9 C 0.08 1.51 6.04 -2.35 -0.01 1.50 16 10 C -0.13 -1.99 5.91 -25.09 -0.15 -2.14 16 11 C 0.16 2.59 1.06 -131.74 -0.14 2.45 16 12 C -0.15 -2.02 6.25 -27.55 -0.17 -2.19 16 13 C 0.52 8.64 8.65 -10.81 -0.09 8.55 16 14 O -0.55 -10.51 18.03 5.55 0.10 -10.41 16 15 N -0.50 -8.89 6.55 31.34 0.21 -8.69 16 16 N -0.43 -8.52 3.46 -48.99 -0.17 -8.69 16 17 C 0.57 13.73 7.40 -12.99 -0.10 13.63 16 18 O -0.53 -13.91 10.28 5.21 0.05 -13.86 16 19 C -0.54 -13.14 9.22 -35.63 -0.33 -13.47 16 20 H 0.07 1.57 6.67 -52.49 -0.35 1.22 16 21 C 0.09 2.25 5.48 -17.37 -0.10 2.16 16 22 N -0.76 -19.90 11.91 55.55 0.66 -19.24 16 23 Si 0.91 18.31 29.56 -169.99 -5.03 13.28 16 24 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 25 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 26 H -0.26 -5.14 7.11 56.52 0.40 -4.73 16 27 C 0.14 2.45 5.54 -3.52 -0.02 2.43 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 1.35 5.88 -51.92 -0.31 1.05 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.09 1.54 5.88 -51.92 -0.31 1.24 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.14 3.03 4.85 -52.94 -0.26 2.77 16 38 H 0.06 0.95 8.05 -51.93 -0.42 0.54 16 39 H 0.08 0.95 7.90 -51.93 -0.41 0.54 16 40 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.11 1.27 7.62 -51.93 -0.40 0.88 16 42 H 0.11 1.30 7.41 -51.93 -0.38 0.91 16 43 H 0.43 7.31 7.63 -182.86 -1.40 5.91 16 44 H 0.28 6.66 8.29 -40.82 -0.34 6.32 16 45 H 0.07 1.10 7.48 -51.93 -0.39 0.71 16 46 H 0.08 1.56 8.03 -51.93 -0.42 1.15 16 LS Contribution 366.74 15.07 5.53 5.53 Total: -1.00 -30.99 366.74 -7.16 -38.15 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -7.54 Total: 11.68 kcal Atomic # 6 Polarization: 22.52 SS G_CDS: 0.17 Total: 22.69 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.17 Total: -48.02 kcal Atomic # 8 Polarization: -42.86 SS G_CDS: -0.46 Total: -43.32 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.99 -7.16 -38.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001418387251.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.460 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds