Wall clock time and date at job start Tue Mar 31 2020 22:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47460 * 2 1 4 4 C 1.53004 * 109.47340 * 239.99695 * 2 1 3 5 5 O 1.45206 * 109.47298 * 120.00054 * 2 1 3 6 6 C 1.34640 * 116.99831 * 59.99544 * 5 2 1 7 7 O 1.21507 * 119.99990 * 0.02562 * 6 5 2 8 8 N 1.34775 * 119.99672 * 180.02562 * 6 5 2 9 9 C 1.47533 * 125.67425 * 359.69642 * 8 6 5 10 10 C 1.55121 * 104.96845 * 156.34202 * 9 8 6 11 11 C 1.53987 * 101.46286 * 35.83192 * 10 9 8 12 12 C 1.52860 * 111.24429 * 205.15579 * 11 10 9 13 13 C 1.51522 * 103.79614 * 238.51362 * 12 11 10 14 14 O 1.21286 * 125.62974 * 179.97438 * 13 12 11 15 15 N 1.34260 * 108.74605 * 0.02562 * 13 12 11 16 16 N 1.39749 * 112.98419 * 359.97438 * 15 13 12 17 17 C 1.34776 * 125.60777 * 180.02562 * 16 15 13 18 18 O 1.21681 * 120.00318 * 173.48300 * 17 16 15 19 19 C 1.46375 * 119.99690 * 353.48360 * 17 16 15 20 20 H 1.08001 * 120.00495 * 6.75651 * 19 17 16 21 21 C 1.40058 * 119.99885 * 186.76008 * 19 17 16 22 22 N 1.30665 * 119.99786 * 6.80897 * 21 19 17 23 23 Si 1.86793 * 119.99983 * 186.81304 * 21 19 17 24 24 H 1.48502 * 109.47479 * 84.98832 * 23 21 19 25 25 H 1.48500 * 109.47009 * 204.98884 * 23 21 19 26 26 H 1.48506 * 109.47357 * 324.98890 * 23 21 19 27 27 C 1.47324 * 125.66987 * 179.97438 * 8 6 5 28 28 H 1.09001 * 109.47429 * 300.00073 * 1 2 3 29 29 H 1.08997 * 109.47378 * 59.99848 * 1 2 3 30 30 H 1.09007 * 109.47561 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47412 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46692 * 299.99851 * 3 2 1 33 33 H 1.08993 * 109.47017 * 59.99861 * 3 2 1 34 34 H 1.09007 * 109.46877 * 300.00520 * 4 2 1 35 35 H 1.08997 * 109.46964 * 60.00213 * 4 2 1 36 36 H 1.09001 * 109.47152 * 180.02562 * 4 2 1 37 37 H 1.08999 * 110.34175 * 275.21901 * 9 8 6 38 38 H 1.09006 * 110.33994 * 37.47143 * 9 8 6 39 39 H 1.08997 * 111.02705 * 277.79079 * 10 9 8 40 40 H 1.08995 * 111.02289 * 153.87652 * 10 9 8 41 41 H 1.09003 * 110.56567 * 357.09752 * 12 11 10 42 42 H 1.09006 * 110.55760 * 119.94121 * 12 11 10 43 43 H 0.97001 * 123.50659 * 180.02562 * 15 13 12 44 44 H 0.96997 * 120.00099 * 180.02562 * 22 21 19 45 45 H 1.08995 * 109.96438 * 300.99008 * 27 8 6 46 46 H 1.09000 * 109.96191 * 62.24590 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5037 8 7 2.0671 -2.6654 2.4172 9 6 2.9222 -2.1418 3.4995 10 6 2.6141 -3.0421 4.7246 11 6 2.3999 -4.4108 4.0524 12 6 1.5075 -5.3129 4.9048 13 6 2.3705 -6.5303 5.1679 14 8 2.0425 -7.5023 5.8149 15 7 3.5585 -6.3549 4.5675 16 7 3.6537 -5.1354 3.8918 17 6 4.7286 -4.7009 3.2045 18 8 4.6611 -3.6743 2.5548 19 6 5.9771 -5.4642 3.2395 20 1 6.0070 -6.4287 3.7244 21 6 7.1330 -4.9435 2.6442 22 7 7.1339 -3.7238 2.1755 23 14 8.6734 -5.9929 2.5201 24 1 8.5990 -6.8394 1.3022 25 1 9.8667 -5.1127 2.4390 26 1 8.7791 -6.8609 3.7205 27 6 1.7471 -4.0736 2.7089 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6765 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 3.9738 -2.2231 3.2245 38 1 2.6656 -1.1050 3.7171 39 1 1.7097 -2.7114 5.2352 40 1 3.4603 -3.0715 5.4109 41 1 1.2465 -4.8191 5.8408 42 1 0.6089 -5.5923 4.3546 43 1 4.2757 -7.0073 4.5988 44 1 7.9343 -3.3634 1.7629 45 1 0.6670 -4.2034 2.7767 46 1 2.1512 -4.7167 1.9271 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001418387251.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:08 Heat of formation + Delta-G solvation = -111.494113 kcal Electronic energy + Delta-G solvation = -31861.969687 eV Core-core repulsion = 27560.225153 eV Total energy + Delta-G solvation = -4301.744533 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.42257 -41.53048 -39.66524 -38.56573 -37.58513 -36.93197 -35.04354 -34.71916 -33.24948 -31.48360 -30.66928 -28.50391 -28.36023 -28.27801 -27.97542 -24.64523 -23.48376 -22.64980 -22.17300 -20.65795 -20.36199 -19.60048 -18.84004 -18.23877 -17.63399 -17.38586 -17.06071 -16.86788 -16.38365 -16.16366 -16.10612 -15.59101 -15.42418 -15.17663 -14.84171 -14.70563 -14.38171 -14.13784 -14.02497 -13.66886 -13.50108 -13.32101 -13.30327 -13.08889 -12.93787 -12.86781 -12.83795 -12.75578 -12.58421 -12.46718 -12.33296 -12.21775 -12.16181 -11.98012 -11.50828 -11.35356 -11.08335 -11.02780 -10.94453 -10.08025 -9.45443 -8.74473 -8.40995 -6.92142 1.12282 1.28367 1.35849 1.41395 1.50332 1.52866 1.85020 2.20276 2.33315 2.96265 3.09989 3.27331 3.32778 3.46465 3.66599 3.77525 3.78575 3.82200 3.96780 4.23129 4.39251 4.49574 4.53934 4.56842 4.59849 4.62223 4.73604 4.76165 4.83373 4.86599 4.88126 4.89047 4.97930 5.09560 5.20525 5.25635 5.29173 5.37455 5.41536 5.47521 5.51024 5.79929 6.09607 6.29104 6.53539 6.79122 6.91036 7.33282 7.57856 8.27810 8.51510 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010079 B = 0.004628 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.251312 B = 6048.231004 C = 8178.574476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.120 3.880 3 C -0.133 4.133 4 C -0.179 4.179 5 O -0.369 6.369 6 C 0.663 3.337 7 O -0.602 6.602 8 N -0.583 5.583 9 C 0.087 3.913 10 C -0.119 4.119 11 C 0.155 3.845 12 C -0.133 4.133 13 C 0.519 3.481 14 O -0.569 6.569 15 N -0.506 5.506 16 N -0.437 5.437 17 C 0.562 3.438 18 O -0.560 6.560 19 C -0.564 4.564 20 H 0.083 0.917 21 C 0.045 3.955 22 N -0.805 5.805 23 Si 0.986 3.014 24 H -0.269 1.269 25 H -0.273 1.273 26 H -0.251 1.251 27 C 0.139 3.861 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.044 0.956 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.126 0.874 40 H 0.083 0.917 41 H 0.153 0.847 42 H 0.140 0.860 43 H 0.425 0.575 44 H 0.278 0.722 45 H 0.105 0.895 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.725 7.338 1.569 12.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.084 3.916 3 C -0.190 4.190 4 C -0.236 4.236 5 O -0.284 6.284 6 C 0.419 3.581 7 O -0.495 6.495 8 N -0.321 5.321 9 C -0.035 4.035 10 C -0.158 4.158 11 C 0.068 3.932 12 C -0.173 4.173 13 C 0.306 3.694 14 O -0.448 6.448 15 N -0.254 5.254 16 N -0.270 5.270 17 C 0.370 3.630 18 O -0.440 6.440 19 C -0.600 4.600 20 H 0.101 0.899 21 C -0.173 4.173 22 N -0.433 5.433 23 Si 0.806 3.194 24 H -0.194 1.194 25 H -0.198 1.198 26 H -0.174 1.174 27 C 0.016 3.984 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.064 0.936 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.144 0.856 40 H 0.102 0.898 41 H 0.171 0.829 42 H 0.157 0.843 43 H 0.269 0.731 44 H 0.088 0.912 45 H 0.122 0.878 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.051 7.661 1.016 12.679 hybrid contribution 1.554 -0.965 -0.553 1.911 sum -8.497 6.696 0.463 10.828 Atomic orbital electron populations 1.22422 0.93018 1.03683 1.03852 1.22466 0.95271 0.92647 0.81247 1.21867 1.01875 0.90615 1.04640 1.22458 1.00787 1.02154 0.98186 1.86334 1.71712 1.23072 1.47296 1.17555 0.78773 0.80829 0.80949 1.90819 1.43908 1.71256 1.43539 1.46935 1.51587 1.12086 1.21515 1.22983 0.97674 0.97414 0.85402 1.23079 1.04401 0.91943 0.96328 1.21031 0.84175 0.93827 0.94153 1.22516 0.98516 0.92705 1.03591 1.20676 0.82100 0.88669 0.77981 1.90766 1.75709 1.35075 1.43224 1.45337 1.17437 1.12887 1.49691 1.48324 1.15215 1.09235 1.54184 1.18287 0.81265 0.85198 0.78205 1.90518 1.81863 1.26951 1.44631 1.21247 0.93364 1.05842 1.39528 0.89923 1.26647 1.03020 0.95653 0.91989 1.70033 1.29892 1.15472 1.27941 0.85180 0.76004 0.78355 0.79834 1.19397 1.19754 1.17417 1.22088 1.00290 0.80159 0.95899 0.91466 0.88659 0.92128 0.92375 0.87336 0.90717 0.92596 0.88298 0.93646 0.89494 0.90645 0.85561 0.89829 0.82935 0.84251 0.73141 0.91227 0.87752 0.94498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.19 8.37 71.98 0.60 -3.59 16 2 C 0.12 3.37 1.13 -10.79 -0.01 3.36 16 3 C -0.13 -2.72 8.85 71.98 0.64 -2.09 16 4 C -0.18 -5.33 8.37 71.98 0.60 -4.72 16 5 O -0.37 -13.42 9.42 -55.49 -0.52 -13.94 16 6 C 0.66 26.51 7.93 129.79 1.03 27.54 16 7 O -0.60 -25.51 12.21 19.82 0.24 -25.27 16 8 N -0.58 -22.13 2.96 -942.96 -2.80 -24.93 16 9 C 0.09 3.12 6.04 86.91 0.53 3.65 16 10 C -0.12 -3.33 5.91 31.65 0.19 -3.15 16 11 C 0.15 4.82 1.06 4.09 0.00 4.82 16 12 C -0.13 -3.11 6.25 30.06 0.19 -2.93 16 13 C 0.52 16.32 8.65 88.00 0.76 17.09 16 14 O -0.57 -20.77 18.03 -3.05 -0.05 -20.83 16 15 N -0.51 -17.68 6.55 -173.42 -1.14 -18.82 16 16 N -0.44 -17.25 3.46 -427.13 -1.48 -18.73 16 17 C 0.56 28.03 7.40 86.36 0.64 28.67 16 18 O -0.56 -30.88 10.28 -4.29 -0.04 -30.93 16 19 C -0.56 -28.44 9.22 24.83 0.23 -28.21 16 20 H 0.08 3.78 6.67 -2.91 -0.02 3.77 16 21 C 0.04 2.25 5.48 85.31 0.47 2.72 16 22 N -0.80 -44.17 11.91 21.84 0.26 -43.91 16 23 Si 0.99 38.16 29.56 68.60 2.03 40.19 16 24 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 25 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 26 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 27 C 0.14 4.82 5.54 86.27 0.48 5.29 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 29 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 1.83 5.88 -2.38 -0.01 1.82 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.06 2.03 5.88 -2.38 -0.01 2.02 16 35 H 0.10 2.18 8.14 -2.39 -0.02 2.17 16 36 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.09 4.11 4.85 -18.41 -0.09 4.02 16 38 H 0.08 2.41 8.05 -2.38 -0.02 2.39 16 39 H 0.13 2.41 7.90 -2.39 -0.02 2.39 16 40 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.15 2.52 7.62 -2.39 -0.02 2.50 16 42 H 0.14 2.59 7.41 -2.38 -0.02 2.58 16 43 H 0.42 14.60 7.63 -213.54 -1.63 12.97 16 44 H 0.28 14.04 8.29 -92.71 -0.77 13.27 16 45 H 0.10 2.92 7.48 -2.39 -0.02 2.90 16 46 H 0.04 1.56 8.03 -2.39 -0.02 1.54 16 Total: -1.00 -72.82 366.74 2.16 -70.66 By element: Atomic # 1 Polarization: 38.73 SS G_CDS: -0.68 Total: 38.05 kcal Atomic # 6 Polarization: 42.11 SS G_CDS: 6.34 Total: 48.45 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -5.15 Total: -106.38 kcal Atomic # 8 Polarization: -90.58 SS G_CDS: -0.38 Total: -90.96 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.19 kcal Total: -72.82 2.16 -70.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001418387251.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.834 kcal (2) G-P(sol) polarization free energy of solvation -72.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds