Wall clock time and date at job start Tue Mar 31 2020 22:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47060 * 2 1 4 4 C 1.52994 * 109.47101 * 240.00146 * 2 1 3 5 5 O 1.45199 * 109.47312 * 120.00126 * 2 1 3 6 6 C 1.34638 * 117.00075 * 59.99779 * 5 2 1 7 7 O 1.21513 * 119.99710 * 0.02562 * 6 5 2 8 8 N 1.34769 * 120.00258 * 179.97438 * 6 5 2 9 9 C 1.47161 * 125.59941 * 359.70133 * 8 6 5 10 10 C 1.54626 * 107.33829 * 179.34730 * 9 8 6 11 11 C 1.53478 * 102.74813 * 339.32811 * 10 9 8 12 12 C 1.53114 * 111.96003 * 154.63095 * 11 10 9 13 13 C 1.52065 * 102.10968 * 99.51841 * 12 11 10 14 14 C 1.47321 * 125.87564 * 193.94231 * 13 12 11 15 15 O 1.21636 * 119.99700 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00402 * 179.97438 * 14 13 12 17 17 C 1.36606 * 120.00208 * 179.97438 * 16 14 13 18 18 H 1.08003 * 120.00200 * 0.02562 * 17 16 14 19 19 C 1.39227 * 119.99912 * 180.02562 * 17 16 14 20 20 N 1.31255 * 120.00047 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99686 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46792 * 90.00430 * 21 19 17 23 23 H 1.48502 * 109.46842 * 209.99807 * 21 19 17 24 24 H 1.48497 * 109.47287 * 330.00087 * 21 19 17 25 25 N 1.29399 * 108.25303 * 13.92444 * 13 12 11 26 26 O 1.41855 * 112.86769 * 0.23634 * 25 13 12 27 27 C 1.47756 * 125.60505 * 179.97438 * 8 6 5 28 28 H 1.09001 * 109.46837 * 299.99950 * 1 2 3 29 29 H 1.09001 * 109.46969 * 59.99603 * 1 2 3 30 30 H 1.08995 * 109.46851 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46869 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47107 * 300.00041 * 3 2 1 33 33 H 1.09001 * 109.47255 * 60.00306 * 3 2 1 34 34 H 1.08995 * 109.47472 * 299.99870 * 4 2 1 35 35 H 1.09009 * 109.47146 * 60.00019 * 4 2 1 36 36 H 1.08999 * 109.47258 * 179.97438 * 4 2 1 37 37 H 1.09006 * 109.86847 * 298.78060 * 9 8 6 38 38 H 1.08994 * 109.87585 * 59.90650 * 9 8 6 39 39 H 1.08997 * 110.75487 * 221.01879 * 10 9 8 40 40 H 1.08997 * 110.91661 * 97.71383 * 10 9 8 41 41 H 1.09000 * 110.91054 * 217.72593 * 12 11 10 42 42 H 1.09009 * 110.90780 * 341.31847 * 12 11 10 43 43 H 0.97001 * 119.99683 * 0.02562 * 16 14 13 44 44 H 0.96997 * 119.99814 * 179.97438 * 20 19 17 45 45 H 1.09002 * 110.39409 * 320.89025 * 27 8 6 46 46 H 1.08995 * 110.39330 * 83.28815 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9517 -2.5097 0.5035 8 7 2.0681 -2.6657 2.4165 9 6 2.9220 -2.1422 3.4947 10 6 3.1226 -3.2832 4.5188 11 6 1.9423 -4.2176 4.2203 12 6 2.2370 -5.6622 4.6334 13 6 1.5256 -5.7622 5.9737 14 6 1.7054 -6.8336 6.9688 15 8 2.4812 -7.7441 6.7485 16 7 1.0112 -6.8042 8.1236 17 6 1.1776 -7.7980 9.0460 18 1 1.8658 -8.6069 8.8502 19 6 0.4600 -7.7679 10.2387 20 7 -0.3768 -6.7851 10.4766 21 14 0.6881 -9.1264 11.5004 22 1 1.7793 -8.7543 12.4365 23 1 -0.5739 -9.3130 12.2605 24 1 1.0403 -10.3916 10.8074 25 7 0.7353 -4.7442 6.0900 26 8 0.7753 -3.8837 4.9629 27 6 1.7463 -4.0782 2.7075 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9564 0.8900 34 1 1.6768 -1.7488 -1.2493 35 1 1.6767 -0.2073 -2.1393 36 1 3.1300 -0.7208 -1.2495 37 1 3.8858 -1.8355 3.0882 38 1 2.4338 -1.2945 3.9754 39 1 3.0650 -2.9017 5.5382 40 1 4.0711 -3.7935 4.3519 41 1 1.8152 -6.3659 3.9157 42 1 3.3090 -5.8228 4.7492 43 1 0.3928 -6.0779 8.2993 44 1 -0.8770 -6.7643 11.3074 45 1 0.7132 -4.2960 2.4366 46 1 2.4277 -4.7407 2.1737 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001442981847.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:58 Heat of formation + Delta-G solvation = -86.747012 kcal Electronic energy + Delta-G solvation = -29731.218772 eV Core-core repulsion = 25430.547353 eV Total energy + Delta-G solvation = -4300.671418 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.22327 -40.46645 -38.40613 -37.64429 -36.35317 -34.31470 -34.27904 -32.66734 -31.91121 -31.38965 -29.88823 -27.69133 -27.62965 -26.74479 -25.74514 -23.85683 -22.70014 -21.94536 -20.81016 -19.64433 -18.97824 -18.28036 -18.08960 -16.83971 -16.64421 -16.29614 -15.95056 -15.41258 -15.19038 -15.17586 -14.82360 -14.45952 -14.15547 -14.06674 -13.83436 -13.70888 -13.35265 -13.23033 -12.96170 -12.79611 -12.75425 -12.45480 -12.16877 -12.15637 -12.05648 -11.89585 -11.77856 -11.56632 -11.53123 -11.44627 -11.36562 -11.21641 -10.63308 -10.59759 -10.52712 -10.36142 -10.21999 -9.83121 -9.27769 -8.92746 -8.87150 -8.32580 -6.78246 -4.09421 1.59432 1.84000 2.67468 3.05640 3.10966 3.15824 3.20157 3.62780 3.84556 3.95267 4.13217 4.24029 4.36577 4.44482 4.48266 4.50487 4.58936 4.62721 4.93540 5.05001 5.13979 5.17937 5.20894 5.26030 5.36376 5.37286 5.40371 5.42799 5.49548 5.51732 5.58097 5.59123 5.67659 5.69960 5.81628 5.86848 5.93415 6.02787 6.09420 6.25279 6.31116 7.20962 7.25413 7.51998 7.74176 8.14850 8.26851 8.81428 9.16648 9.71574 10.36198 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033596 B = 0.002023 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.243585 B =13835.064385 C =14067.682789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.360 6.360 6 C 0.671 3.329 7 O -0.567 6.567 8 N -0.602 5.602 9 C 0.111 3.889 10 C -0.141 4.141 11 C 0.053 3.947 12 C -0.114 4.114 13 C 0.086 3.914 14 C 0.467 3.533 15 O -0.590 6.590 16 N -0.507 5.507 17 C -0.296 4.296 18 H 0.115 0.885 19 C 0.029 3.971 20 N -0.866 5.866 21 Si 0.941 3.059 22 H -0.273 1.273 23 H -0.279 1.279 24 H -0.264 1.264 25 N -0.283 5.283 26 O -0.184 6.184 27 C 0.142 3.858 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.403 0.597 44 H 0.282 0.718 45 H 0.096 0.904 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.692 13.801 -17.205 22.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.098 3.902 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.275 6.275 6 C 0.427 3.573 7 O -0.457 6.457 8 N -0.344 5.344 9 C -0.012 4.012 10 C -0.179 4.179 11 C 0.011 3.989 12 C -0.154 4.154 13 C -0.106 4.106 14 C 0.253 3.747 15 O -0.476 6.476 16 N -0.140 5.140 17 C -0.427 4.427 18 H 0.133 0.867 19 C -0.178 4.178 20 N -0.503 5.503 21 Si 0.766 3.234 22 H -0.198 1.198 23 H -0.204 1.204 24 H -0.188 1.188 25 N -0.032 5.032 26 O -0.200 6.200 27 C 0.019 3.981 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.126 0.874 42 H 0.132 0.868 43 H 0.238 0.762 44 H 0.092 0.908 45 H 0.114 0.886 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.942 13.919 -17.044 22.553 hybrid contribution 0.234 -0.332 0.157 0.435 sum 5.175 13.587 -16.887 22.283 Atomic orbital electron populations 1.22520 0.93909 1.05181 1.02502 1.22088 0.94490 0.91507 0.82087 1.21853 1.02190 0.92509 1.03152 1.22515 1.01481 1.03555 0.96457 1.86312 1.71455 1.23357 1.46384 1.17389 0.78535 0.80375 0.81039 1.90905 1.41324 1.70576 1.42850 1.47125 1.53057 1.12487 1.21684 1.22081 0.94544 0.97219 0.87319 1.22946 0.98117 0.96199 1.00679 1.22726 0.88722 0.94548 0.92925 1.22485 1.04351 0.94635 0.93912 1.26517 0.94303 0.93706 0.96035 1.16296 0.88537 0.86777 0.83060 1.90669 1.41533 1.36947 1.78440 1.41911 1.34847 1.23349 1.13881 1.19976 1.23492 1.03522 0.95731 0.86703 1.25598 0.95168 0.98409 0.98654 1.69578 1.23680 1.30694 1.26386 0.85678 0.78057 0.80218 0.79406 1.19805 1.20439 1.18798 1.78888 1.18187 1.02429 1.03734 1.91072 1.40820 1.53854 1.34227 1.21980 1.03603 0.80370 0.92104 0.92071 0.91159 0.89340 0.91504 0.90136 0.91414 0.89363 0.91153 0.92222 0.90751 0.90640 0.88527 0.88643 0.87369 0.86845 0.76185 0.90762 0.88604 0.88989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 8.37 37.16 0.31 -1.48 16 2 C 0.13 1.30 1.13 -90.62 -0.10 1.20 16 3 C -0.14 -0.95 8.85 37.16 0.33 -0.62 16 4 C -0.18 -1.66 8.37 37.15 0.31 -1.35 16 5 O -0.36 -4.34 9.49 -40.32 -0.38 -4.72 16 6 C 0.67 9.15 7.93 54.05 0.43 9.58 16 7 O -0.57 -8.71 12.17 -19.28 -0.23 -8.95 16 8 N -0.60 -7.57 3.34 -176.80 -0.59 -8.16 16 9 C 0.11 1.17 6.91 -2.83 -0.02 1.15 16 10 C -0.14 -1.55 6.21 -25.63 -0.16 -1.71 16 11 C 0.05 0.72 1.13 -90.22 -0.10 0.62 16 12 C -0.11 -1.65 6.03 -27.15 -0.16 -1.81 16 13 C 0.09 1.68 7.30 -79.25 -0.58 1.10 16 14 C 0.47 11.01 7.76 -12.57 -0.10 10.91 16 15 O -0.59 -15.25 16.53 5.25 0.09 -15.16 16 16 N -0.51 -12.72 5.27 -12.00 -0.06 -12.79 16 17 C -0.30 -7.75 9.68 -15.06 -0.15 -7.90 16 18 H 0.12 3.07 7.15 -52.48 -0.38 2.70 16 19 C 0.03 0.72 5.50 -17.43 -0.10 0.63 16 20 N -0.87 -22.25 13.04 55.51 0.72 -21.53 16 21 Si 0.94 19.30 29.55 -169.99 -5.02 14.28 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 25 N -0.28 -5.58 12.18 35.36 0.43 -5.15 16 26 O -0.18 -3.24 12.07 -11.59 -0.14 -3.38 16 27 C 0.14 1.73 6.09 -3.26 -0.02 1.71 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 1.09 5.88 -51.93 -0.31 0.78 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 1.02 5.88 -51.93 -0.31 0.71 16 35 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.10 0.85 7.77 -51.93 -0.40 0.44 16 41 H 0.11 1.42 7.96 -51.93 -0.41 1.01 16 42 H 0.11 1.47 7.64 -51.92 -0.40 1.07 16 43 H 0.40 10.10 7.57 -40.82 -0.31 9.79 16 44 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 45 H 0.10 1.29 8.08 -51.93 -0.42 0.87 16 46 H 0.09 0.92 8.06 -51.93 -0.42 0.51 16 LS Contribution 381.95 15.07 5.76 5.76 Total: -1.00 -30.75 381.95 -6.25 -37.00 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -6.71 Total: 10.77 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: -0.10 Total: 12.02 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.50 Total: -47.62 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.67 Total: -32.20 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.75 -6.25 -37.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442981847.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.747 kcal (2) G-P(sol) polarization free energy of solvation -30.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds