Wall clock time and date at job start Tue Mar 31 2020 22:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47060 * 2 1 4 4 C 1.52994 * 109.47101 * 240.00146 * 2 1 3 5 5 O 1.45199 * 109.47312 * 120.00126 * 2 1 3 6 6 C 1.34638 * 117.00075 * 59.99779 * 5 2 1 7 7 O 1.21513 * 119.99710 * 0.02562 * 6 5 2 8 8 N 1.34769 * 120.00258 * 179.97438 * 6 5 2 9 9 C 1.47161 * 125.59941 * 359.70133 * 8 6 5 10 10 C 1.54626 * 107.33829 * 179.34730 * 9 8 6 11 11 C 1.53478 * 102.74813 * 339.32811 * 10 9 8 12 12 C 1.53114 * 111.96003 * 154.63095 * 11 10 9 13 13 C 1.52065 * 102.10968 * 99.51841 * 12 11 10 14 14 C 1.47321 * 125.87564 * 193.94231 * 13 12 11 15 15 O 1.21636 * 119.99700 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00402 * 179.97438 * 14 13 12 17 17 C 1.36606 * 120.00208 * 179.97438 * 16 14 13 18 18 H 1.08003 * 120.00200 * 0.02562 * 17 16 14 19 19 C 1.39227 * 119.99912 * 180.02562 * 17 16 14 20 20 N 1.31255 * 120.00047 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99686 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46792 * 90.00430 * 21 19 17 23 23 H 1.48502 * 109.46842 * 209.99807 * 21 19 17 24 24 H 1.48497 * 109.47287 * 330.00087 * 21 19 17 25 25 N 1.29399 * 108.25303 * 13.92444 * 13 12 11 26 26 O 1.41855 * 112.86769 * 0.23634 * 25 13 12 27 27 C 1.47756 * 125.60505 * 179.97438 * 8 6 5 28 28 H 1.09001 * 109.46837 * 299.99950 * 1 2 3 29 29 H 1.09001 * 109.46969 * 59.99603 * 1 2 3 30 30 H 1.08995 * 109.46851 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46869 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47107 * 300.00041 * 3 2 1 33 33 H 1.09001 * 109.47255 * 60.00306 * 3 2 1 34 34 H 1.08995 * 109.47472 * 299.99870 * 4 2 1 35 35 H 1.09009 * 109.47146 * 60.00019 * 4 2 1 36 36 H 1.08999 * 109.47258 * 179.97438 * 4 2 1 37 37 H 1.09006 * 109.86847 * 298.78060 * 9 8 6 38 38 H 1.08994 * 109.87585 * 59.90650 * 9 8 6 39 39 H 1.08997 * 110.75487 * 221.01879 * 10 9 8 40 40 H 1.08997 * 110.91661 * 97.71383 * 10 9 8 41 41 H 1.09000 * 110.91054 * 217.72593 * 12 11 10 42 42 H 1.09009 * 110.90780 * 341.31847 * 12 11 10 43 43 H 0.97001 * 119.99683 * 0.02562 * 16 14 13 44 44 H 0.96997 * 119.99814 * 179.97438 * 20 19 17 45 45 H 1.09002 * 110.39409 * 320.89025 * 27 8 6 46 46 H 1.08995 * 110.39330 * 83.28815 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9517 -2.5097 0.5035 8 7 2.0681 -2.6657 2.4165 9 6 2.9220 -2.1422 3.4947 10 6 3.1226 -3.2832 4.5188 11 6 1.9423 -4.2176 4.2203 12 6 2.2370 -5.6622 4.6334 13 6 1.5256 -5.7622 5.9737 14 6 1.7054 -6.8336 6.9688 15 8 2.4812 -7.7441 6.7485 16 7 1.0112 -6.8042 8.1236 17 6 1.1776 -7.7980 9.0460 18 1 1.8658 -8.6069 8.8502 19 6 0.4600 -7.7679 10.2387 20 7 -0.3768 -6.7851 10.4766 21 14 0.6881 -9.1264 11.5004 22 1 1.7793 -8.7543 12.4365 23 1 -0.5739 -9.3130 12.2605 24 1 1.0403 -10.3916 10.8074 25 7 0.7353 -4.7442 6.0900 26 8 0.7753 -3.8837 4.9629 27 6 1.7463 -4.0782 2.7075 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9564 0.8900 34 1 1.6768 -1.7488 -1.2493 35 1 1.6767 -0.2073 -2.1393 36 1 3.1300 -0.7208 -1.2495 37 1 3.8858 -1.8355 3.0882 38 1 2.4338 -1.2945 3.9754 39 1 3.0650 -2.9017 5.5382 40 1 4.0711 -3.7935 4.3519 41 1 1.8152 -6.3659 3.9157 42 1 3.3090 -5.8228 4.7492 43 1 0.3928 -6.0779 8.2993 44 1 -0.8770 -6.7643 11.3074 45 1 0.7132 -4.2960 2.4366 46 1 2.4277 -4.7407 2.1737 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001442981847.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:57 Heat of formation + Delta-G solvation = -107.743801 kcal Electronic energy + Delta-G solvation = -29732.129261 eV Core-core repulsion = 25430.547353 eV Total energy + Delta-G solvation = -4301.581907 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.33183 -41.58725 -40.09956 -38.83113 -37.40550 -36.23884 -35.10432 -34.22006 -33.40580 -32.83849 -30.85950 -28.36639 -28.29229 -27.91020 -27.60284 -24.95180 -24.30075 -22.81708 -21.99382 -20.71945 -20.52277 -20.01603 -19.17537 -17.98379 -17.66235 -17.54733 -17.36416 -16.77507 -16.49779 -16.23181 -16.08699 -15.80390 -15.46977 -15.44395 -15.09170 -14.77179 -14.47491 -14.38229 -14.26984 -14.00715 -13.64439 -13.35272 -13.21020 -13.10905 -13.01886 -12.90466 -12.86984 -12.76011 -12.60127 -12.55698 -12.45557 -12.35237 -12.29878 -12.11116 -11.80824 -11.65568 -11.40909 -11.16303 -10.82789 -10.64990 -10.25293 -9.89315 -8.65679 -6.10393 0.00859 0.93459 1.43015 1.43736 1.57507 1.66856 1.80209 2.17412 2.21435 2.64294 2.75670 3.11796 3.20553 3.23486 3.33243 3.44249 3.74763 3.78578 3.79779 3.94612 4.08354 4.17395 4.29512 4.41385 4.44058 4.51681 4.56733 4.61733 4.64849 4.68391 4.76598 4.78233 4.82338 4.85125 4.88128 4.95546 5.01574 5.15073 5.26826 5.28045 5.33565 5.42113 5.74393 6.10098 6.28422 6.36970 6.88321 7.16513 7.25191 7.78507 8.50086 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033596 B = 0.002023 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.243585 B =13835.064385 C =14067.682789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.122 3.878 3 C -0.134 4.134 4 C -0.178 4.178 5 O -0.363 6.363 6 C 0.666 3.334 7 O -0.591 6.591 8 N -0.606 5.606 9 C 0.113 3.887 10 C -0.135 4.135 11 C 0.050 3.950 12 C -0.106 4.106 13 C 0.080 3.920 14 C 0.473 3.527 15 O -0.611 6.611 16 N -0.522 5.522 17 C -0.336 4.336 18 H 0.101 0.899 19 C -0.007 4.007 20 N -0.898 5.898 21 Si 1.008 2.992 22 H -0.265 1.265 23 H -0.270 1.270 24 H -0.263 1.263 25 N -0.295 5.295 26 O -0.191 6.191 27 C 0.144 3.856 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.136 0.864 43 H 0.400 0.600 44 H 0.288 0.712 45 H 0.079 0.921 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.126 14.893 -18.473 24.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.086 3.914 3 C -0.191 4.191 4 C -0.235 4.235 5 O -0.278 6.278 6 C 0.422 3.578 7 O -0.482 6.482 8 N -0.348 5.348 9 C -0.009 4.009 10 C -0.173 4.173 11 C 0.008 3.992 12 C -0.146 4.146 13 C -0.113 4.113 14 C 0.260 3.740 15 O -0.499 6.499 16 N -0.156 5.156 17 C -0.466 4.466 18 H 0.119 0.881 19 C -0.211 4.211 20 N -0.536 5.536 21 Si 0.829 3.171 22 H -0.190 1.190 23 H -0.195 1.195 24 H -0.188 1.188 25 N -0.042 5.042 26 O -0.209 6.209 27 C 0.022 3.978 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.122 0.878 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.154 0.846 43 H 0.234 0.766 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.381 15.022 -18.290 24.513 hybrid contribution -0.220 -0.518 0.342 0.659 sum 6.161 14.504 -17.948 23.884 Atomic orbital electron populations 1.22483 0.94326 1.03481 1.03518 1.22478 0.94409 0.92901 0.81573 1.21877 1.02565 0.90392 1.04278 1.22458 1.01767 1.02096 0.97160 1.86324 1.71418 1.22489 1.47557 1.17565 0.78369 0.80851 0.81063 1.90900 1.42330 1.71176 1.43795 1.47223 1.53109 1.12613 1.21816 1.22176 0.95301 0.96730 0.86696 1.22995 0.98140 0.95808 1.00341 1.22986 0.88253 0.94591 0.93342 1.22597 1.05229 0.95541 0.91255 1.26206 0.95395 0.92563 0.97103 1.16783 0.87149 0.87044 0.83010 1.90636 1.42051 1.38138 1.79042 1.41972 1.35598 1.23419 1.14587 1.20011 1.25080 1.04286 0.97256 0.88115 1.26463 0.94266 1.00468 0.99856 1.69644 1.24508 1.32226 1.27219 0.84711 0.78387 0.77169 0.76815 1.18967 1.19452 1.18753 1.78849 1.17678 1.02570 1.05130 1.91052 1.42980 1.53118 1.33783 1.22012 1.03554 0.81052 0.91166 0.92403 0.88803 0.92287 0.90907 0.87795 0.91504 0.92102 0.88965 0.91642 0.88221 0.91257 0.89377 0.85618 0.85742 0.84620 0.76553 0.90251 0.90245 0.86071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.37 8.37 71.98 0.60 -2.77 16 2 C 0.12 2.17 1.13 -10.79 -0.01 2.16 16 3 C -0.13 -1.47 8.85 71.98 0.64 -0.84 16 4 C -0.18 -2.95 8.37 71.98 0.60 -2.34 16 5 O -0.36 -8.28 9.49 -55.48 -0.53 -8.81 16 6 C 0.67 17.59 7.93 129.79 1.03 18.62 16 7 O -0.59 -18.17 12.17 19.80 0.24 -17.93 16 8 N -0.61 -14.22 3.34 -943.70 -3.15 -17.37 16 9 C 0.11 2.10 6.91 86.81 0.60 2.70 16 10 C -0.14 -2.60 6.21 31.31 0.19 -2.40 16 11 C 0.05 1.25 1.13 -10.53 -0.01 1.24 16 12 C -0.11 -2.86 6.03 30.32 0.18 -2.68 16 13 C 0.08 3.07 7.30 45.75 0.33 3.40 16 14 C 0.47 22.62 7.76 86.63 0.67 23.30 16 15 O -0.61 -31.87 16.53 -4.14 -0.07 -31.94 16 16 N -0.52 -27.06 5.27 -310.13 -1.63 -28.69 16 17 C -0.34 -18.17 9.68 84.19 0.81 -17.35 16 18 H 0.10 5.59 7.15 -2.91 -0.02 5.57 16 19 C -0.01 -0.34 5.50 85.02 0.47 0.13 16 20 N -0.90 -47.07 13.04 21.71 0.28 -46.79 16 21 Si 1.01 39.79 29.55 68.60 2.03 41.82 16 22 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 23 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 24 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 25 N -0.30 -11.62 12.18 -42.03 -0.51 -12.13 16 26 O -0.19 -6.57 12.07 -39.36 -0.48 -7.04 16 27 C 0.14 3.26 6.09 86.20 0.53 3.79 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.47 5.88 -2.39 -0.01 1.46 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.10 0.66 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 1.38 5.88 -2.39 -0.01 1.36 16 35 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 39 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.13 1.70 7.77 -2.39 -0.02 1.69 16 41 H 0.12 2.97 7.96 -2.39 -0.02 2.95 16 42 H 0.14 3.08 7.64 -2.38 -0.02 3.06 16 43 H 0.40 20.80 7.57 -92.71 -0.70 20.10 16 44 H 0.29 13.89 8.31 -92.71 -0.77 13.12 16 45 H 0.08 2.08 8.08 -2.39 -0.02 2.06 16 46 H 0.12 2.06 8.06 -2.39 -0.02 2.05 16 Total: -1.00 -68.99 381.95 3.13 -65.85 By element: Atomic # 1 Polarization: 35.78 SS G_CDS: 0.31 Total: 36.09 kcal Atomic # 6 Polarization: 20.30 SS G_CDS: 6.64 Total: 26.94 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -5.02 Total: -104.98 kcal Atomic # 8 Polarization: -64.90 SS G_CDS: -0.83 Total: -65.73 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -68.99 3.13 -65.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442981847.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.890 kcal (2) G-P(sol) polarization free energy of solvation -68.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds