Wall clock time and date at job start Tue Mar 31 2020 22:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47405 * 2 1 4 4 C 1.52998 * 109.47118 * 239.99224 * 2 1 3 5 5 O 1.45207 * 109.46699 * 119.99719 * 2 1 3 6 6 C 1.34638 * 117.00079 * 60.00067 * 5 2 1 7 7 O 1.21508 * 120.00022 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99667 * 179.97438 * 6 5 2 9 9 C 1.47151 * 125.60702 * 359.97438 * 8 6 5 10 10 C 1.54621 * 107.33824 * 180.91345 * 9 8 6 11 11 C 1.53472 * 102.75399 * 20.66559 * 10 9 8 12 12 C 1.53268 * 112.19454 * 205.42155 * 11 10 9 13 13 C 1.52064 * 102.03131 * 260.74946 * 12 11 10 14 14 C 1.47336 * 125.87010 * 165.95725 * 13 12 11 15 15 O 1.21633 * 119.99719 * 359.71773 * 14 13 12 16 16 N 1.34773 * 119.99920 * 179.44666 * 14 13 12 17 17 C 1.36605 * 120.00157 * 180.02562 * 16 14 13 18 18 H 1.08004 * 119.99881 * 359.97438 * 17 16 14 19 19 C 1.39214 * 120.00707 * 179.97438 * 17 16 14 20 20 N 1.31259 * 119.99450 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00602 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47043 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47048 * 120.00095 * 21 19 17 24 24 H 1.48501 * 109.47100 * 240.00545 * 21 19 17 25 25 N 1.29388 * 108.26209 * 345.69635 * 13 12 11 26 26 O 1.41859 * 112.86650 * 0.03647 * 25 13 12 27 27 C 1.47754 * 125.59749 * 179.97438 * 8 6 5 28 28 H 1.09002 * 109.47107 * 300.00651 * 1 2 3 29 29 H 1.08998 * 109.46947 * 59.99871 * 1 2 3 30 30 H 1.08993 * 109.47452 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47009 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46809 * 299.99323 * 3 2 1 33 33 H 1.09002 * 109.47520 * 59.99601 * 3 2 1 34 34 H 1.09000 * 109.47464 * 300.00692 * 4 2 1 35 35 H 1.09001 * 109.46812 * 60.00238 * 4 2 1 36 36 H 1.09006 * 109.47138 * 180.02562 * 4 2 1 37 37 H 1.09002 * 109.87101 * 300.35324 * 9 8 6 38 38 H 1.09001 * 109.86687 * 61.33432 * 9 8 6 39 39 H 1.09003 * 110.75629 * 262.34643 * 10 9 8 40 40 H 1.09008 * 110.75610 * 138.98270 * 10 9 8 41 41 H 1.09000 * 111.03860 * 142.53277 * 12 11 10 42 42 H 1.08993 * 110.84575 * 18.88098 * 12 11 10 43 43 H 0.96998 * 120.00525 * 359.97438 * 16 14 13 44 44 H 0.97000 * 119.99404 * 179.97438 * 20 19 17 45 45 H 1.08997 * 110.40027 * 38.84793 * 27 8 6 46 46 H 1.09003 * 110.39778 * 276.44734 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2491 5 8 2.0139 -0.6845 1.1857 6 6 1.6521 -1.9723 1.3385 7 8 0.9508 -2.5094 0.5042 8 7 2.0679 -2.6656 2.4169 9 6 2.9169 -2.1404 3.4979 10 6 3.1522 -3.2936 4.5007 11 6 2.8550 -4.5413 3.6578 12 6 2.4139 -5.7301 4.5189 13 6 3.7001 -6.5332 4.6333 14 6 3.9513 -7.6301 5.5843 15 8 3.0872 -7.9600 6.3741 16 7 5.1366 -8.2715 5.5753 17 6 5.3693 -9.2889 6.4567 18 1 4.6037 -9.5790 7.1610 19 6 6.5934 -9.9519 6.4471 20 7 7.5242 -9.5991 5.5915 21 14 6.9119 -11.3427 7.6529 22 1 5.7124 -11.5436 8.5049 23 1 7.2007 -12.5915 6.9030 24 1 8.0757 -10.9989 8.5089 25 7 4.5341 -6.0913 3.7481 26 8 4.0035 -5.0283 2.9730 27 6 1.7460 -4.0780 2.7078 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9562 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6766 -1.7490 -1.2491 35 1 1.6767 -0.2076 -2.1391 36 1 3.1301 -0.7218 -1.2489 37 1 3.8700 -1.8037 3.0902 38 1 2.4131 -1.3113 3.9950 39 1 2.4617 -3.2217 5.3411 40 1 4.1855 -3.2989 4.8478 41 1 1.6374 -6.3087 4.0187 42 1 2.0764 -5.3946 5.4995 43 1 5.8242 -8.0113 4.9425 44 1 8.3772 -10.0608 5.5851 45 1 1.7603 -4.6675 1.7912 46 1 0.7734 -4.1536 3.1940 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001442981848.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:02 Heat of formation + Delta-G solvation = -86.774269 kcal Electronic energy + Delta-G solvation = -29731.783959 eV Core-core repulsion = 25431.111358 eV Total energy + Delta-G solvation = -4300.672600 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.22110 -40.46337 -38.40760 -37.64495 -36.35453 -34.31591 -34.27938 -32.66827 -31.90371 -31.38897 -29.89045 -27.69156 -27.62992 -26.74219 -25.74602 -23.85882 -22.70095 -21.94318 -20.81019 -19.64428 -18.97771 -18.28044 -18.09008 -16.84044 -16.64302 -16.29784 -15.95222 -15.41333 -15.19078 -15.17718 -14.82355 -14.46130 -14.15585 -14.06243 -13.83517 -13.71024 -13.35260 -13.22665 -12.96204 -12.79704 -12.75579 -12.45580 -12.17001 -12.15716 -12.05743 -11.89882 -11.78011 -11.56655 -11.53271 -11.45136 -11.35994 -11.23218 -10.61946 -10.59551 -10.49566 -10.36470 -10.22014 -9.84572 -9.28063 -8.92726 -8.87260 -8.32611 -6.78352 -4.09524 1.59355 1.83994 2.67474 3.04285 3.11167 3.16556 3.20757 3.62741 3.84649 3.95132 4.13217 4.24294 4.36167 4.44451 4.48252 4.50362 4.58730 4.62696 4.93436 5.04985 5.13927 5.17883 5.20899 5.26101 5.36321 5.37288 5.40383 5.42822 5.49486 5.51659 5.57902 5.59048 5.67606 5.69906 5.81554 5.86824 5.93381 6.02805 6.09405 6.25254 6.31038 7.21156 7.25388 7.51939 7.74382 8.14833 8.26773 8.81541 9.16709 9.71464 10.36185 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033533 B = 0.002024 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.789285 B =13830.275948 C =14063.735022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.360 6.360 6 C 0.671 3.329 7 O -0.567 6.567 8 N -0.602 5.602 9 C 0.111 3.889 10 C -0.141 4.141 11 C 0.053 3.947 12 C -0.113 4.113 13 C 0.086 3.914 14 C 0.467 3.533 15 O -0.589 6.589 16 N -0.507 5.507 17 C -0.295 4.295 18 H 0.116 0.884 19 C 0.029 3.971 20 N -0.866 5.866 21 Si 0.941 3.059 22 H -0.262 1.262 23 H -0.276 1.276 24 H -0.276 1.276 25 N -0.283 5.283 26 O -0.184 6.184 27 C 0.141 3.859 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.403 0.597 44 H 0.282 0.718 45 H 0.096 0.904 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.469 19.201 -7.851 22.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.275 6.275 6 C 0.427 3.573 7 O -0.456 6.456 8 N -0.344 5.344 9 C -0.012 4.012 10 C -0.179 4.179 11 C 0.011 3.989 12 C -0.154 4.154 13 C -0.106 4.106 14 C 0.254 3.746 15 O -0.476 6.476 16 N -0.140 5.140 17 C -0.427 4.427 18 H 0.133 0.867 19 C -0.179 4.179 20 N -0.503 5.503 21 Si 0.766 3.234 22 H -0.186 1.186 23 H -0.202 1.202 24 H -0.202 1.202 25 N -0.032 5.032 26 O -0.200 6.200 27 C 0.019 3.981 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.238 0.762 44 H 0.092 0.908 45 H 0.114 0.886 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.039 18.901 -8.415 22.578 hybrid contribution -0.097 -0.219 0.348 0.422 sum -9.136 18.682 -8.067 22.306 Atomic orbital electron populations 1.22514 0.94002 1.05084 1.02405 1.22088 0.94363 0.91528 0.82191 1.21853 1.02344 0.92460 1.03046 1.22520 1.01715 1.03531 0.96349 1.86313 1.71487 1.23385 1.46329 1.17390 0.78709 0.80436 0.80804 1.90904 1.41573 1.70493 1.42679 1.47125 1.53270 1.12405 1.21557 1.22081 0.95046 0.96619 0.87431 1.22937 1.04725 0.92747 0.97473 1.22764 0.88483 0.94670 0.93017 1.22509 0.97595 0.93042 1.02213 1.26520 0.92810 0.96350 0.94913 1.16301 0.85309 0.85522 0.87504 1.90669 1.45329 1.68745 1.42818 1.41917 1.12694 1.28375 1.31044 1.20023 1.00525 1.08842 1.13290 0.86653 1.25597 0.95005 0.99364 0.97888 1.69590 1.05974 1.40570 1.34210 0.85628 0.78963 0.79380 0.79456 1.18612 1.20200 1.20205 1.78887 1.19142 1.00341 1.04843 1.91073 1.41048 1.45350 1.42517 1.21991 0.96470 0.79696 0.99930 0.92224 0.91149 0.89365 0.91413 0.90141 0.91500 0.89342 0.91154 0.92071 0.90672 0.90742 0.88642 0.88504 0.87342 0.86862 0.76188 0.90820 0.88604 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 8.37 37.16 0.31 -1.35 16 2 C 0.13 1.30 1.13 -90.62 -0.10 1.20 16 3 C -0.14 -0.95 8.85 37.16 0.33 -0.62 16 4 C -0.18 -1.79 8.37 37.16 0.31 -1.48 16 5 O -0.36 -4.34 9.49 -40.32 -0.38 -4.72 16 6 C 0.67 9.15 7.93 54.05 0.43 9.58 16 7 O -0.57 -8.71 12.16 -19.28 -0.23 -8.95 16 8 N -0.60 -7.56 3.34 -176.80 -0.59 -8.15 16 9 C 0.11 1.17 6.91 -2.83 -0.02 1.15 16 10 C -0.14 -1.54 6.22 -25.63 -0.16 -1.70 16 11 C 0.05 0.72 1.13 -90.13 -0.10 0.61 16 12 C -0.11 -1.64 6.04 -27.07 -0.16 -1.81 16 13 C 0.09 1.67 7.30 -79.25 -0.58 1.09 16 14 C 0.47 11.02 7.76 -12.56 -0.10 10.92 16 15 O -0.59 -15.24 16.53 5.25 0.09 -15.16 16 16 N -0.51 -12.73 5.27 -12.00 -0.06 -12.79 16 17 C -0.30 -7.74 9.68 -15.06 -0.15 -7.89 16 18 H 0.12 3.09 7.15 -52.48 -0.38 2.72 16 19 C 0.03 0.71 5.50 -17.43 -0.10 0.62 16 20 N -0.87 -22.26 13.04 55.51 0.72 -21.54 16 21 Si 0.94 19.30 29.55 -169.99 -5.02 14.28 16 22 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 23 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 25 N -0.28 -5.58 12.18 35.37 0.43 -5.14 16 26 O -0.18 -3.24 12.07 -11.60 -0.14 -3.38 16 27 C 0.14 1.73 6.09 -3.25 -0.02 1.71 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.09 1.02 5.88 -51.93 -0.31 0.71 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 1.09 5.88 -51.93 -0.31 0.79 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.10 0.84 7.79 -51.93 -0.40 0.44 16 40 H 0.10 1.14 8.14 -51.92 -0.42 0.72 16 41 H 0.11 1.42 7.97 -51.93 -0.41 1.01 16 42 H 0.11 1.47 7.66 -51.93 -0.40 1.07 16 43 H 0.40 10.10 7.57 -40.82 -0.31 9.79 16 44 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 45 H 0.10 1.29 8.08 -51.93 -0.42 0.87 16 46 H 0.09 0.92 8.06 -51.93 -0.42 0.50 16 LS Contribution 381.99 15.07 5.76 5.76 Total: -1.00 -30.79 381.99 -6.25 -37.04 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -6.71 Total: 10.74 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: -0.10 Total: 12.02 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: 0.50 Total: -47.63 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.67 Total: -32.20 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.79 -6.25 -37.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442981848.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.734 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds