Wall clock time and date at job start Tue Mar 31 2020 22:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47405 * 2 1 4 4 C 1.52998 * 109.47118 * 239.99224 * 2 1 3 5 5 O 1.45207 * 109.46699 * 119.99719 * 2 1 3 6 6 C 1.34638 * 117.00079 * 60.00067 * 5 2 1 7 7 O 1.21508 * 120.00022 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99667 * 179.97438 * 6 5 2 9 9 C 1.47151 * 125.60702 * 359.97438 * 8 6 5 10 10 C 1.54621 * 107.33824 * 180.91345 * 9 8 6 11 11 C 1.53472 * 102.75399 * 20.66559 * 10 9 8 12 12 C 1.53268 * 112.19454 * 205.42155 * 11 10 9 13 13 C 1.52064 * 102.03131 * 260.74946 * 12 11 10 14 14 C 1.47336 * 125.87010 * 165.95725 * 13 12 11 15 15 O 1.21633 * 119.99719 * 359.71773 * 14 13 12 16 16 N 1.34773 * 119.99920 * 179.44666 * 14 13 12 17 17 C 1.36605 * 120.00157 * 180.02562 * 16 14 13 18 18 H 1.08004 * 119.99881 * 359.97438 * 17 16 14 19 19 C 1.39214 * 120.00707 * 179.97438 * 17 16 14 20 20 N 1.31259 * 119.99450 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00602 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47043 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47048 * 120.00095 * 21 19 17 24 24 H 1.48501 * 109.47100 * 240.00545 * 21 19 17 25 25 N 1.29388 * 108.26209 * 345.69635 * 13 12 11 26 26 O 1.41859 * 112.86650 * 0.03647 * 25 13 12 27 27 C 1.47754 * 125.59749 * 179.97438 * 8 6 5 28 28 H 1.09002 * 109.47107 * 300.00651 * 1 2 3 29 29 H 1.08998 * 109.46947 * 59.99871 * 1 2 3 30 30 H 1.08993 * 109.47452 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47009 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46809 * 299.99323 * 3 2 1 33 33 H 1.09002 * 109.47520 * 59.99601 * 3 2 1 34 34 H 1.09000 * 109.47464 * 300.00692 * 4 2 1 35 35 H 1.09001 * 109.46812 * 60.00238 * 4 2 1 36 36 H 1.09006 * 109.47138 * 180.02562 * 4 2 1 37 37 H 1.09002 * 109.87101 * 300.35324 * 9 8 6 38 38 H 1.09001 * 109.86687 * 61.33432 * 9 8 6 39 39 H 1.09003 * 110.75629 * 262.34643 * 10 9 8 40 40 H 1.09008 * 110.75610 * 138.98270 * 10 9 8 41 41 H 1.09000 * 111.03860 * 142.53277 * 12 11 10 42 42 H 1.08993 * 110.84575 * 18.88098 * 12 11 10 43 43 H 0.96998 * 120.00525 * 359.97438 * 16 14 13 44 44 H 0.97000 * 119.99404 * 179.97438 * 20 19 17 45 45 H 1.08997 * 110.40027 * 38.84793 * 27 8 6 46 46 H 1.09003 * 110.39778 * 276.44734 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2491 5 8 2.0139 -0.6845 1.1857 6 6 1.6521 -1.9723 1.3385 7 8 0.9508 -2.5094 0.5042 8 7 2.0679 -2.6656 2.4169 9 6 2.9169 -2.1404 3.4979 10 6 3.1522 -3.2936 4.5007 11 6 2.8550 -4.5413 3.6578 12 6 2.4139 -5.7301 4.5189 13 6 3.7001 -6.5332 4.6333 14 6 3.9513 -7.6301 5.5843 15 8 3.0872 -7.9600 6.3741 16 7 5.1366 -8.2715 5.5753 17 6 5.3693 -9.2889 6.4567 18 1 4.6037 -9.5790 7.1610 19 6 6.5934 -9.9519 6.4471 20 7 7.5242 -9.5991 5.5915 21 14 6.9119 -11.3427 7.6529 22 1 5.7124 -11.5436 8.5049 23 1 7.2007 -12.5915 6.9030 24 1 8.0757 -10.9989 8.5089 25 7 4.5341 -6.0913 3.7481 26 8 4.0035 -5.0283 2.9730 27 6 1.7460 -4.0780 2.7078 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9562 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6766 -1.7490 -1.2491 35 1 1.6767 -0.2076 -2.1391 36 1 3.1301 -0.7218 -1.2489 37 1 3.8700 -1.8037 3.0902 38 1 2.4131 -1.3113 3.9950 39 1 2.4617 -3.2217 5.3411 40 1 4.1855 -3.2989 4.8478 41 1 1.6374 -6.3087 4.0187 42 1 2.0764 -5.3946 5.4995 43 1 5.8242 -8.0113 4.9425 44 1 8.3772 -10.0608 5.5851 45 1 1.7603 -4.6675 1.7912 46 1 0.7734 -4.1536 3.1940 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001442981848.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:01 Heat of formation + Delta-G solvation = -107.809548 kcal Electronic energy + Delta-G solvation = -29732.696117 eV Core-core repulsion = 25431.111358 eV Total energy + Delta-G solvation = -4301.584758 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.32798 -41.58581 -40.10075 -38.83170 -37.40657 -36.24078 -35.10460 -34.22044 -33.40352 -32.83226 -30.86147 -28.36702 -28.29259 -27.90760 -27.60448 -24.95072 -24.30388 -22.81459 -21.99337 -20.71919 -20.52297 -20.01556 -19.17676 -17.98468 -17.66363 -17.54650 -17.36477 -16.77769 -16.49691 -16.23301 -16.08801 -15.80003 -15.47218 -15.44638 -15.09125 -14.77243 -14.47708 -14.37977 -14.26757 -14.00701 -13.65213 -13.35171 -13.20861 -13.11069 -13.02889 -12.90494 -12.87124 -12.76242 -12.60568 -12.54808 -12.45199 -12.34973 -12.29866 -12.08581 -11.80984 -11.67160 -11.40988 -11.16338 -10.82901 -10.65289 -10.25365 -9.89245 -8.65895 -6.10576 0.00835 0.93465 1.42003 1.43291 1.58905 1.66869 1.80046 2.17130 2.21404 2.64315 2.75619 3.11640 3.20738 3.23652 3.32968 3.43939 3.74730 3.78569 3.79742 3.94573 4.08336 4.17481 4.29555 4.41407 4.44046 4.51671 4.56660 4.61772 4.64951 4.68293 4.76511 4.78183 4.82326 4.85065 4.88127 4.95566 5.01605 5.15050 5.27061 5.28018 5.33559 5.42055 5.74496 6.10027 6.28409 6.36858 6.88398 7.16493 7.25189 7.78396 8.50142 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033533 B = 0.002024 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.789285 B =13830.275948 C =14063.735022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.122 3.878 3 C -0.134 4.134 4 C -0.181 4.181 5 O -0.363 6.363 6 C 0.666 3.334 7 O -0.591 6.591 8 N -0.607 5.607 9 C 0.113 3.887 10 C -0.135 4.135 11 C 0.050 3.950 12 C -0.106 4.106 13 C 0.080 3.920 14 C 0.473 3.527 15 O -0.611 6.611 16 N -0.523 5.523 17 C -0.335 4.335 18 H 0.101 0.899 19 C -0.007 4.007 20 N -0.898 5.898 21 Si 1.008 2.992 22 H -0.262 1.262 23 H -0.269 1.269 24 H -0.267 1.267 25 N -0.295 5.295 26 O -0.191 6.191 27 C 0.144 3.856 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.126 0.874 40 H 0.088 0.912 41 H 0.125 0.875 42 H 0.136 0.864 43 H 0.400 0.600 44 H 0.287 0.713 45 H 0.079 0.921 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.457 21.148 -7.634 24.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.086 3.914 3 C -0.191 4.191 4 C -0.238 4.238 5 O -0.278 6.278 6 C 0.421 3.579 7 O -0.482 6.482 8 N -0.348 5.348 9 C -0.009 4.009 10 C -0.172 4.172 11 C 0.008 3.992 12 C -0.146 4.146 13 C -0.113 4.113 14 C 0.261 3.739 15 O -0.498 6.498 16 N -0.156 5.156 17 C -0.466 4.466 18 H 0.119 0.881 19 C -0.211 4.211 20 N -0.536 5.536 21 Si 0.829 3.171 22 H -0.186 1.186 23 H -0.194 1.194 24 H -0.192 1.192 25 N -0.042 5.042 26 O -0.210 6.210 27 C 0.022 3.978 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.118 0.882 39 H 0.144 0.856 40 H 0.106 0.894 41 H 0.143 0.857 42 H 0.154 0.846 43 H 0.234 0.766 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.005 20.853 -8.188 24.536 hybrid contribution 0.115 -0.641 0.125 0.663 sum -9.890 20.212 -8.062 23.903 Atomic orbital electron populations 1.22457 0.93587 1.03648 1.03786 1.22479 0.94899 0.92728 0.81252 1.21877 1.02300 0.90425 1.04511 1.22483 1.01435 1.02153 0.97738 1.86326 1.71483 1.22545 1.47439 1.17567 0.78610 0.80939 0.80738 1.90898 1.42665 1.71108 1.43527 1.47223 1.53332 1.12444 1.21763 1.22176 0.94847 0.97083 0.86811 1.22986 1.05093 0.91133 0.98017 1.23025 0.87485 0.95284 0.93387 1.22622 0.95532 0.92664 1.03779 1.26208 0.95292 0.95703 0.94088 1.16789 0.84352 0.85523 0.87282 1.90636 1.45850 1.69570 1.43791 1.41976 1.13228 1.29009 1.31400 1.20044 1.01252 1.10707 1.14563 0.88122 1.26462 0.94176 1.01197 0.99243 1.69653 1.06504 1.41870 1.35601 0.84656 0.78804 0.76354 0.77253 1.18632 1.19386 1.19211 1.78848 1.20134 1.00775 1.04451 1.91053 1.42761 1.44522 1.42614 1.22024 0.97126 0.79516 0.99149 0.91644 0.88962 0.92105 0.91500 0.87802 0.90899 0.92293 0.88798 0.92407 0.91296 0.88209 0.85610 0.89352 0.85720 0.84636 0.76554 0.90262 0.90252 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.95 8.37 71.98 0.60 -2.34 16 2 C 0.12 2.17 1.13 -10.80 -0.01 2.16 16 3 C -0.13 -1.47 8.85 71.98 0.64 -0.84 16 4 C -0.18 -3.37 8.37 71.98 0.60 -2.77 16 5 O -0.36 -8.29 9.49 -55.47 -0.53 -8.81 16 6 C 0.67 17.60 7.93 129.79 1.03 18.63 16 7 O -0.59 -18.18 12.16 19.82 0.24 -17.94 16 8 N -0.61 -14.21 3.34 -943.69 -3.15 -17.37 16 9 C 0.11 2.10 6.91 86.81 0.60 2.70 16 10 C -0.13 -2.59 6.22 31.30 0.19 -2.39 16 11 C 0.05 1.25 1.13 -10.48 -0.01 1.24 16 12 C -0.11 -2.85 6.04 30.38 0.18 -2.67 16 13 C 0.08 3.06 7.30 45.75 0.33 3.39 16 14 C 0.47 22.64 7.76 86.64 0.67 23.31 16 15 O -0.61 -31.87 16.53 -4.13 -0.07 -31.94 16 16 N -0.52 -27.08 5.27 -310.13 -1.63 -28.71 16 17 C -0.34 -18.14 9.68 84.18 0.81 -17.33 16 18 H 0.10 5.61 7.15 -2.91 -0.02 5.58 16 19 C -0.01 -0.35 5.50 85.01 0.47 0.11 16 20 N -0.90 -47.09 13.04 21.71 0.28 -46.81 16 21 Si 1.01 39.83 29.55 68.60 2.03 41.86 16 22 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 23 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 24 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 25 N -0.29 -11.61 12.18 -42.02 -0.51 -12.12 16 26 O -0.19 -6.57 12.07 -39.37 -0.48 -7.05 16 27 C 0.14 3.25 6.09 86.21 0.53 3.78 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.38 5.88 -2.39 -0.01 1.36 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.10 0.66 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 1.47 5.88 -2.39 -0.01 1.46 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.13 1.70 7.79 -2.39 -0.02 1.68 16 40 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 41 H 0.12 2.97 7.97 -2.39 -0.02 2.95 16 42 H 0.14 3.07 7.66 -2.39 -0.02 3.05 16 43 H 0.40 20.80 7.57 -92.71 -0.70 20.10 16 44 H 0.29 13.85 8.31 -92.71 -0.77 13.08 16 45 H 0.08 2.08 8.08 -2.39 -0.02 2.06 16 46 H 0.12 2.06 8.06 -2.39 -0.02 2.04 16 Total: -1.00 -69.08 381.99 3.14 -65.95 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: 0.31 Total: 35.97 kcal Atomic # 6 Polarization: 20.33 SS G_CDS: 6.64 Total: 26.97 kcal Atomic # 7 Polarization: -99.99 SS G_CDS: -5.01 Total: -105.01 kcal Atomic # 8 Polarization: -64.91 SS G_CDS: -0.83 Total: -65.74 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Total: -69.08 3.14 -65.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442981848.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.860 kcal (2) G-P(sol) polarization free energy of solvation -69.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds