Wall clock time and date at job start Tue Mar 31 2020 22:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47008 * 2 1 4 4 C 1.52994 * 109.47286 * 239.99698 * 2 1 3 5 5 O 1.45202 * 109.46964 * 119.99510 * 2 1 3 6 6 C 1.34638 * 116.99776 * 60.00058 * 5 2 1 7 7 O 1.21513 * 119.99956 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99672 * 180.27362 * 6 5 2 9 9 C 1.47353 * 135.88415 * 359.36552 * 8 6 5 10 10 C 1.52256 * 87.46911 * 154.22573 * 9 8 6 11 11 C 1.47365 * 135.87708 * 179.72069 * 8 6 5 12 12 C 1.53310 * 116.96336 * 267.80189 * 10 9 8 13 13 C 1.52022 * 102.10879 * 251.59864 * 12 10 9 14 14 C 1.47604 * 125.84399 * 165.96161 * 13 12 10 15 15 O 1.21550 * 120.00178 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99575 * 180.02562 * 14 13 12 17 17 C 1.46504 * 119.99538 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.46926 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00115 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99780 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00226 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00142 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47011 * 59.99909 * 22 20 18 24 24 H 1.48492 * 109.47478 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47020 * 300.00428 * 22 20 18 26 26 N 1.29197 * 108.31243 * 345.98274 * 13 12 10 27 27 O 1.41810 * 112.93847 * 359.76094 * 26 13 12 28 28 H 1.08997 * 109.47363 * 300.00806 * 1 2 3 29 29 H 1.09005 * 109.46795 * 60.00585 * 1 2 3 30 30 H 1.09001 * 109.46811 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46984 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46584 * 299.99377 * 3 2 1 33 33 H 1.08998 * 109.47272 * 59.99708 * 3 2 1 34 34 H 1.08995 * 109.47307 * 299.99583 * 4 2 1 35 35 H 1.08999 * 109.47211 * 60.00515 * 4 2 1 36 36 H 1.09010 * 109.46887 * 180.02562 * 4 2 1 37 37 H 1.08997 * 113.53349 * 268.84928 * 9 8 6 38 38 H 1.08993 * 113.53287 * 39.49898 * 9 8 6 39 39 H 1.08996 * 113.53896 * 320.50842 * 11 8 6 40 40 H 1.09003 * 113.52412 * 91.15221 * 11 8 6 41 41 H 1.09000 * 110.90765 * 9.80732 * 12 10 9 42 42 H 1.09008 * 110.89975 * 133.36211 * 12 10 9 43 43 H 0.96994 * 120.00131 * 0.02562 * 16 14 13 44 44 H 1.09000 * 109.47112 * 300.00161 * 17 16 14 45 45 H 1.08996 * 109.47086 * 60.00294 * 17 16 14 46 46 H 0.96998 * 120.00452 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3385 7 8 0.9516 -2.5096 0.5037 8 7 2.0630 -2.6638 2.4199 9 6 2.8935 -2.3808 3.6038 10 6 2.1211 -3.4776 4.3240 11 6 1.8825 -4.0343 2.9304 12 6 0.8817 -3.0485 5.1178 13 6 1.3496 -3.2158 6.5546 14 6 0.6746 -2.6771 7.7517 15 8 -0.3504 -2.0345 7.6340 16 7 1.1955 -2.8970 8.9751 17 6 0.5259 -2.3619 10.1632 18 6 1.3056 -2.7451 11.3946 19 1 2.2097 -3.3284 11.3015 20 6 0.8653 -2.3499 12.6400 21 7 -0.2354 -1.6391 12.7533 22 14 1.8313 -2.8255 14.1665 23 1 3.2043 -2.2666 14.0774 24 1 1.1527 -2.2830 15.3707 25 1 1.9047 -4.3054 14.2647 26 7 2.4393 -3.9098 6.5484 27 8 2.8438 -4.2920 5.2441 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6768 -1.7489 -1.2491 35 1 1.6768 -0.2075 -2.1392 36 1 3.1301 -0.7216 -1.2488 37 1 3.9486 -2.6136 3.4609 38 1 2.7322 -1.3869 4.0210 39 1 0.8752 -4.4242 2.7841 40 1 2.6564 -4.7271 2.6001 41 1 0.6273 -2.0092 4.9101 42 1 0.0371 -3.7038 4.9044 43 1 2.0141 -3.4088 9.0689 44 1 0.4716 -1.2756 10.0914 45 1 -0.4816 -2.7725 10.2283 46 1 -0.5454 -1.3614 13.6295 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467579495.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:23 Heat of formation + Delta-G solvation = -46.463453 kcal Electronic energy + Delta-G solvation = -29269.130663 eV Core-core repulsion = 24970.206071 eV Total energy + Delta-G solvation = -4298.924592 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.84838 -40.72597 -39.17984 -38.15970 -36.74090 -34.49382 -34.38066 -33.36745 -32.37262 -30.75088 -27.80208 -27.75469 -27.71912 -27.34264 -26.83557 -24.29512 -22.67103 -21.99797 -20.94683 -19.68023 -19.50009 -18.30741 -17.63181 -17.12494 -16.67652 -16.42299 -16.15795 -15.78612 -15.51041 -15.26316 -15.14409 -14.64831 -14.54355 -14.38445 -14.23407 -13.86119 -13.63184 -13.24086 -13.00596 -12.84214 -12.75050 -12.58079 -12.27641 -12.25012 -12.22439 -12.07690 -12.02684 -11.77130 -11.66680 -11.43998 -11.14983 -11.05245 -10.92392 -10.72000 -10.42705 -10.40198 -9.80454 -9.72748 -9.51134 -9.33047 -8.85496 -8.14328 -6.24183 -4.31899 0.99299 1.46360 2.42259 2.68316 3.19197 3.23157 3.27999 3.29241 3.36942 3.37997 3.66690 3.92911 4.04806 4.27561 4.34541 4.40083 4.49877 4.53533 4.66800 4.80445 4.95377 4.96939 5.09647 5.11950 5.12471 5.16763 5.18979 5.19733 5.33313 5.37157 5.42830 5.46139 5.50202 5.59637 5.65058 5.92201 5.97080 6.12411 6.83527 7.05412 7.15569 7.18900 7.33927 7.53836 7.84131 7.93633 8.32652 8.52667 8.79442 9.34496 10.85752 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021103 B = 0.002012 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.521635 B =13915.563776 C =14543.459791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.135 3.865 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.358 6.358 6 C 0.690 3.310 7 O -0.562 6.562 8 N -0.631 5.631 9 C 0.100 3.900 10 C 0.025 3.975 11 C 0.150 3.850 12 C -0.103 4.103 13 C 0.072 3.928 14 C 0.565 3.435 15 O -0.529 6.529 16 N -0.681 5.681 17 C 0.247 3.753 18 C -0.548 4.548 19 H 0.066 0.934 20 C 0.066 3.934 21 N -0.885 5.885 22 Si 0.907 3.093 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 N -0.245 5.245 27 O -0.167 6.167 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.401 0.599 44 H 0.035 0.965 45 H 0.035 0.965 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.891 1.000 -25.954 26.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.273 6.273 6 C 0.446 3.554 7 O -0.451 6.451 8 N -0.376 5.376 9 C -0.024 4.024 10 C -0.017 4.017 11 C 0.027 3.973 12 C -0.143 4.143 13 C -0.124 4.124 14 C 0.346 3.654 15 O -0.405 6.405 16 N -0.329 5.329 17 C 0.127 3.873 18 C -0.586 4.586 19 H 0.084 0.916 20 C -0.139 4.139 21 N -0.522 5.522 22 Si 0.733 3.267 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.200 1.200 26 N 0.009 4.991 27 O -0.183 6.183 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.122 0.878 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.124 0.876 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.235 0.765 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.632 1.008 -25.804 26.431 hybrid contribution 0.367 -0.078 0.234 0.442 sum 5.999 0.930 -25.570 26.281 Atomic orbital electron populations 1.22533 0.93754 1.05120 1.02782 1.22151 0.94585 0.91572 0.81820 1.21868 1.02281 0.92316 1.03350 1.22520 1.01571 1.03433 0.96527 1.86331 1.71273 1.23060 1.46630 1.17040 0.78381 0.80419 0.79531 1.90925 1.41433 1.70714 1.41981 1.47720 1.53768 1.14464 1.21637 1.23390 0.96794 1.00204 0.81977 1.23429 0.92776 0.93918 0.91588 1.22798 1.04520 0.83561 0.86386 1.22300 0.97970 1.06528 0.87492 1.26611 0.92515 0.95480 0.97758 1.16963 0.84800 0.81883 0.81799 1.90827 1.23483 1.40596 1.85594 1.46551 1.27920 1.52309 1.06161 1.19328 0.93475 0.95130 0.79372 1.21150 1.10549 1.36218 0.90670 0.91635 1.24939 0.95092 0.94577 0.99259 1.69951 1.21591 1.35757 1.24862 0.86424 0.79877 0.78943 0.81414 1.19961 1.21038 1.19960 1.78749 1.11397 1.09427 0.99552 1.91101 1.61301 1.56099 1.09836 0.91880 0.90983 0.89418 0.91438 0.89975 0.91251 0.89469 0.90960 0.92151 0.87785 0.88779 0.88359 0.87584 0.86498 0.86336 0.76467 0.94719 0.94697 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 8.37 37.16 0.31 -1.30 16 2 C 0.14 1.19 1.13 -90.62 -0.10 1.09 16 3 C -0.14 -0.90 8.85 37.16 0.33 -0.57 16 4 C -0.18 -1.50 8.37 37.15 0.31 -1.19 16 5 O -0.36 -3.94 9.91 -40.32 -0.40 -4.34 16 6 C 0.69 8.19 8.26 54.06 0.45 8.63 16 7 O -0.56 -7.62 12.65 -19.28 -0.24 -7.86 16 8 N -0.63 -6.40 3.69 -191.51 -0.71 -7.10 16 9 C 0.10 0.89 8.25 -7.45 -0.06 0.83 16 10 C 0.03 0.25 1.75 -91.39 -0.16 0.09 16 11 C 0.15 1.27 8.26 -7.60 -0.06 1.20 16 12 C -0.10 -1.17 6.35 -27.07 -0.17 -1.34 16 13 C 0.07 1.06 7.31 -79.23 -0.58 0.48 16 14 C 0.56 10.68 7.82 -12.44 -0.10 10.58 16 15 O -0.53 -11.58 16.96 5.32 0.09 -11.49 16 16 N -0.68 -13.89 5.55 -62.51 -0.35 -14.24 16 17 C 0.25 6.20 5.43 -5.19 -0.03 6.18 16 18 C -0.55 -14.37 9.28 -34.44 -0.32 -14.69 16 19 H 0.07 1.62 7.60 -52.49 -0.40 1.22 16 20 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.88 -25.16 13.29 55.43 0.74 -24.42 16 22 Si 0.91 20.39 29.54 -169.99 -5.02 15.36 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 N -0.25 -3.56 12.17 35.39 0.43 -3.13 16 27 O -0.17 -2.06 12.39 -11.57 -0.14 -2.21 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.96 5.88 -51.93 -0.31 0.65 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.90 5.88 -51.93 -0.31 0.60 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.84 8.11 -51.93 -0.42 0.41 16 39 H 0.10 0.77 8.12 -51.93 -0.42 0.35 16 40 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.12 1.30 7.99 -51.93 -0.41 0.88 16 42 H 0.12 1.19 8.13 -51.92 -0.42 0.77 16 43 H 0.40 7.43 8.00 -40.82 -0.33 7.10 16 44 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 389.92 15.07 5.88 5.88 Total: -1.00 -31.57 389.92 -6.81 -38.38 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -6.80 Total: 3.50 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: -0.28 Total: 11.66 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.11 Total: -48.89 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.70 Total: -25.90 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.57 -6.81 -38.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467579495.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.082 kcal (2) G-P(sol) polarization free energy of solvation -31.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds