Wall clock time and date at job start Tue Mar 31 2020 22:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47008 * 2 1 4 4 C 1.52994 * 109.47286 * 239.99698 * 2 1 3 5 5 O 1.45202 * 109.46964 * 119.99510 * 2 1 3 6 6 C 1.34638 * 116.99776 * 60.00058 * 5 2 1 7 7 O 1.21513 * 119.99956 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99672 * 180.27362 * 6 5 2 9 9 C 1.47353 * 135.88415 * 359.36552 * 8 6 5 10 10 C 1.52256 * 87.46911 * 154.22573 * 9 8 6 11 11 C 1.47365 * 135.87708 * 179.72069 * 8 6 5 12 12 C 1.53310 * 116.96336 * 267.80189 * 10 9 8 13 13 C 1.52022 * 102.10879 * 251.59864 * 12 10 9 14 14 C 1.47604 * 125.84399 * 165.96161 * 13 12 10 15 15 O 1.21550 * 120.00178 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99575 * 180.02562 * 14 13 12 17 17 C 1.46504 * 119.99538 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.46926 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00115 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99780 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00226 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00142 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47011 * 59.99909 * 22 20 18 24 24 H 1.48492 * 109.47478 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47020 * 300.00428 * 22 20 18 26 26 N 1.29197 * 108.31243 * 345.98274 * 13 12 10 27 27 O 1.41810 * 112.93847 * 359.76094 * 26 13 12 28 28 H 1.08997 * 109.47363 * 300.00806 * 1 2 3 29 29 H 1.09005 * 109.46795 * 60.00585 * 1 2 3 30 30 H 1.09001 * 109.46811 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46984 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46584 * 299.99377 * 3 2 1 33 33 H 1.08998 * 109.47272 * 59.99708 * 3 2 1 34 34 H 1.08995 * 109.47307 * 299.99583 * 4 2 1 35 35 H 1.08999 * 109.47211 * 60.00515 * 4 2 1 36 36 H 1.09010 * 109.46887 * 180.02562 * 4 2 1 37 37 H 1.08997 * 113.53349 * 268.84928 * 9 8 6 38 38 H 1.08993 * 113.53287 * 39.49898 * 9 8 6 39 39 H 1.08996 * 113.53896 * 320.50842 * 11 8 6 40 40 H 1.09003 * 113.52412 * 91.15221 * 11 8 6 41 41 H 1.09000 * 110.90765 * 9.80732 * 12 10 9 42 42 H 1.09008 * 110.89975 * 133.36211 * 12 10 9 43 43 H 0.96994 * 120.00131 * 0.02562 * 16 14 13 44 44 H 1.09000 * 109.47112 * 300.00161 * 17 16 14 45 45 H 1.08996 * 109.47086 * 60.00294 * 17 16 14 46 46 H 0.96998 * 120.00452 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3385 7 8 0.9516 -2.5096 0.5037 8 7 2.0630 -2.6638 2.4199 9 6 2.8935 -2.3808 3.6038 10 6 2.1211 -3.4776 4.3240 11 6 1.8825 -4.0343 2.9304 12 6 0.8817 -3.0485 5.1178 13 6 1.3496 -3.2158 6.5546 14 6 0.6746 -2.6771 7.7517 15 8 -0.3504 -2.0345 7.6340 16 7 1.1955 -2.8970 8.9751 17 6 0.5259 -2.3619 10.1632 18 6 1.3056 -2.7451 11.3946 19 1 2.2097 -3.3284 11.3015 20 6 0.8653 -2.3499 12.6400 21 7 -0.2354 -1.6391 12.7533 22 14 1.8313 -2.8255 14.1665 23 1 3.2043 -2.2666 14.0774 24 1 1.1527 -2.2830 15.3707 25 1 1.9047 -4.3054 14.2647 26 7 2.4393 -3.9098 6.5484 27 8 2.8438 -4.2920 5.2441 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6768 -1.7489 -1.2491 35 1 1.6768 -0.2075 -2.1392 36 1 3.1301 -0.7216 -1.2488 37 1 3.9486 -2.6136 3.4609 38 1 2.7322 -1.3869 4.0210 39 1 0.8752 -4.4242 2.7841 40 1 2.6564 -4.7271 2.6001 41 1 0.6273 -2.0092 4.9101 42 1 0.0371 -3.7038 4.9044 43 1 2.0141 -3.4088 9.0689 44 1 0.4716 -1.2756 10.0914 45 1 -0.4816 -2.7725 10.2283 46 1 -0.5454 -1.3614 13.6295 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467579495.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:22 Heat of formation + Delta-G solvation = -69.018741 kcal Electronic energy + Delta-G solvation = -29270.108733 eV Core-core repulsion = 24970.206071 eV Total energy + Delta-G solvation = -4299.902663 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.74607 -41.61225 -40.62591 -39.19502 -37.60419 -36.33580 -35.10570 -34.71007 -34.11992 -31.66229 -29.59733 -28.37813 -28.36732 -28.31272 -27.53759 -25.97483 -23.77825 -23.47195 -21.83243 -21.13980 -20.35204 -19.19820 -18.86666 -18.03082 -17.93984 -17.58651 -17.28543 -17.09316 -16.87386 -16.41691 -16.26758 -15.97461 -15.88163 -15.24095 -15.20945 -14.90672 -14.50905 -14.38551 -14.09302 -14.06134 -14.03930 -13.45475 -13.37136 -13.27827 -13.05642 -12.94951 -12.93644 -12.89552 -12.69424 -12.49386 -12.42105 -12.36366 -12.26694 -12.14566 -11.55317 -11.44052 -11.37381 -11.22298 -10.83904 -10.78746 -10.11376 -10.02188 -8.29834 -6.45973 -0.26488 0.70269 1.43571 1.47599 1.48360 1.56622 1.64525 1.88091 2.05408 2.39953 2.54151 2.85228 3.00642 3.05565 3.06016 3.30722 3.71351 3.77696 3.78935 3.91960 3.98046 4.13498 4.28181 4.30880 4.38245 4.44737 4.46137 4.57679 4.60764 4.65878 4.75495 4.78089 4.84937 4.86239 5.03000 5.11373 5.19685 5.26488 5.28744 5.29915 5.40127 5.53839 5.78787 5.84107 6.37563 6.56231 6.64848 7.03133 7.09436 7.27407 8.81507 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021103 B = 0.002012 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.521635 B =13915.563776 C =14543.459791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.123 3.877 3 C -0.137 4.137 4 C -0.178 4.178 5 O -0.367 6.367 6 C 0.684 3.316 7 O -0.584 6.584 8 N -0.634 5.634 9 C 0.103 3.897 10 C 0.028 3.972 11 C 0.153 3.847 12 C -0.100 4.100 13 C 0.067 3.933 14 C 0.571 3.429 15 O -0.562 6.562 16 N -0.682 5.682 17 C 0.263 3.737 18 C -0.561 4.561 19 H 0.081 0.919 20 C 0.009 3.991 21 N -0.926 5.926 22 Si 0.982 3.018 23 H -0.263 1.263 24 H -0.284 1.284 25 H -0.264 1.264 26 N -0.248 5.248 27 O -0.156 6.156 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.123 0.877 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.128 0.872 41 H 0.118 0.882 42 H 0.133 0.867 43 H 0.412 0.588 44 H 0.004 0.996 45 H 0.003 0.997 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.801 0.503 -27.044 28.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.087 3.913 3 C -0.194 4.194 4 C -0.235 4.235 5 O -0.281 6.281 6 C 0.441 3.559 7 O -0.475 6.475 8 N -0.379 5.379 9 C -0.020 4.020 10 C -0.014 4.014 11 C 0.032 3.968 12 C -0.139 4.139 13 C -0.128 4.128 14 C 0.354 3.646 15 O -0.439 6.439 16 N -0.332 5.332 17 C 0.141 3.859 18 C -0.598 4.598 19 H 0.099 0.901 20 C -0.191 4.191 21 N -0.564 5.564 22 Si 0.805 3.195 23 H -0.188 1.188 24 H -0.210 1.210 25 H -0.189 1.189 26 N 0.008 4.992 27 O -0.176 6.176 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.123 0.877 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.141 0.859 38 H 0.113 0.887 39 H 0.125 0.875 40 H 0.146 0.854 41 H 0.136 0.864 42 H 0.151 0.849 43 H 0.248 0.752 44 H 0.022 0.978 45 H 0.021 0.979 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.569 0.500 -26.904 27.953 hybrid contribution -0.222 0.079 0.458 0.515 sum 7.347 0.579 -26.446 27.454 Atomic orbital electron populations 1.22491 0.93955 1.03728 1.03640 1.22493 0.94637 0.92708 0.81427 1.21895 1.02488 0.90657 1.04312 1.22463 1.01700 1.02159 0.97166 1.86338 1.71376 1.22706 1.47696 1.17199 0.78297 0.80677 0.79698 1.90916 1.42449 1.71203 1.42904 1.47772 1.53622 1.15112 1.21363 1.23484 0.97521 0.99873 0.81100 1.23465 0.92010 0.94411 0.91563 1.22949 1.05900 0.83248 0.84725 1.22364 0.99102 1.07123 0.85338 1.25951 0.93035 0.96407 0.97372 1.17313 0.84204 0.80751 0.82345 1.90805 1.24996 1.41793 1.86314 1.46266 1.28307 1.52898 1.05715 1.18789 0.92506 0.93171 0.81394 1.21535 1.11030 1.36195 0.91086 0.90088 1.25968 0.96007 0.94284 1.02858 1.70095 1.23438 1.37049 1.25781 0.85250 0.78479 0.78982 0.76807 1.18801 1.20970 1.18871 1.78706 1.10762 1.08369 1.01403 1.91091 1.61243 1.56188 1.09083 0.92304 0.88841 0.91830 0.91109 0.87704 0.91595 0.91871 0.88869 0.91820 0.85886 0.88729 0.87547 0.85388 0.86350 0.84945 0.75218 0.97841 0.97873 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 8.37 71.98 0.60 -2.43 16 2 C 0.12 2.03 1.13 -10.79 -0.01 2.01 16 3 C -0.14 -1.49 8.85 71.98 0.64 -0.85 16 4 C -0.18 -2.69 8.37 71.98 0.60 -2.09 16 5 O -0.37 -7.76 9.91 -55.47 -0.55 -8.31 16 6 C 0.68 15.71 8.26 129.79 1.07 16.78 16 7 O -0.58 -15.72 12.65 19.80 0.25 -15.47 16 8 N -0.63 -11.78 3.69 -992.18 -3.66 -15.44 16 9 C 0.10 1.63 8.25 83.70 0.69 2.32 16 10 C 0.03 0.49 1.75 -11.28 -0.02 0.47 16 11 C 0.15 2.23 8.26 83.60 0.69 2.92 16 12 C -0.10 -2.13 6.35 30.38 0.19 -1.94 16 13 C 0.07 1.93 7.31 45.84 0.33 2.26 16 14 C 0.57 21.95 7.82 86.72 0.68 22.63 16 15 O -0.56 -25.37 16.96 -3.87 -0.07 -25.43 16 16 N -0.68 -28.39 5.55 -469.97 -2.61 -31.00 16 17 C 0.26 13.77 5.43 85.63 0.46 14.23 16 18 C -0.56 -29.69 9.28 25.60 0.24 -29.46 16 19 H 0.08 3.94 7.60 -2.91 -0.02 3.92 16 20 C 0.01 0.50 5.46 84.65 0.46 0.96 16 21 N -0.93 -53.85 13.29 21.45 0.28 -53.57 16 22 Si 0.98 41.48 29.54 68.60 2.03 43.50 16 23 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 24 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 26 N -0.25 -6.82 12.17 -41.95 -0.51 -7.33 16 27 O -0.16 -3.49 12.39 -39.26 -0.49 -3.97 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.06 1.40 5.88 -2.39 -0.01 1.38 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 1.29 5.88 -2.39 -0.01 1.28 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.09 1.52 8.11 -2.39 -0.02 1.50 16 39 H 0.11 1.42 8.12 -2.39 -0.02 1.40 16 40 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.12 2.52 7.99 -2.39 -0.02 2.50 16 42 H 0.13 2.45 8.13 -2.38 -0.02 2.43 16 43 H 0.41 15.21 8.00 -92.71 -0.74 14.47 16 44 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 45 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 46 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -69.79 389.92 1.58 -68.21 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.27 Total: 21.00 kcal Atomic # 6 Polarization: 21.18 SS G_CDS: 6.63 Total: 27.82 kcal Atomic # 7 Polarization: -100.84 SS G_CDS: -6.50 Total: -107.34 kcal Atomic # 8 Polarization: -52.34 SS G_CDS: -0.85 Total: -53.19 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.50 kcal Total: -69.79 1.58 -68.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467579495.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.807 kcal (2) G-P(sol) polarization free energy of solvation -69.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds