Wall clock time and date at job start Tue Mar 31 2020 22:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47102 * 2 1 4 4 C 1.53002 * 109.46998 * 240.00335 * 2 1 3 5 5 O 1.45200 * 109.47143 * 119.99874 * 2 1 3 6 6 C 1.34629 * 116.99616 * 60.00293 * 5 2 1 7 7 O 1.21514 * 120.00248 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00250 * 179.97438 * 6 5 2 9 9 C 1.47064 * 136.06124 * 179.97438 * 8 6 5 10 10 C 1.53499 * 88.04848 * 207.05651 * 9 8 6 11 11 O 1.42902 * 114.20426 * 87.55386 * 10 9 8 12 12 C 1.53002 * 114.20692 * 220.37351 * 10 9 8 13 13 C 1.50693 * 109.47114 * 297.94613 * 12 10 9 14 14 O 1.21289 * 120.00593 * 2.62182 * 13 12 10 15 15 N 1.34783 * 119.99843 * 182.62771 * 13 12 10 16 16 C 1.37100 * 120.00115 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99708 * 21.32202 * 16 15 13 18 18 C 1.38946 * 120.00177 * 201.32975 * 16 15 13 19 19 N 1.31411 * 119.99569 * 11.91916 * 18 16 15 20 20 Si 1.86796 * 120.00151 * 191.91929 * 18 16 15 21 21 H 1.48496 * 109.47132 * 59.99580 * 20 18 16 22 22 H 1.48505 * 109.47297 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46853 * 299.99681 * 20 18 16 24 24 C 1.46492 * 119.99862 * 359.97438 * 15 13 12 25 25 C 1.47201 * 109.47191 * 83.70242 * 24 15 13 26 26 N 9.18800 * 134.08740 * 178.15717 * 5 1 2 27 27 C 1.47066 * 136.05149 * 359.94730 * 8 6 5 28 28 H 1.08996 * 109.47217 * 300.00148 * 1 2 3 29 29 H 1.09004 * 109.46819 * 59.99584 * 1 2 3 30 30 H 1.08992 * 109.46925 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47096 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47269 * 300.00422 * 3 2 1 33 33 H 1.09001 * 109.46930 * 60.00249 * 3 2 1 34 34 H 1.08992 * 109.46985 * 299.99598 * 4 2 1 35 35 H 1.08994 * 109.47205 * 60.00307 * 4 2 1 36 36 H 1.09005 * 109.46952 * 179.97438 * 4 2 1 37 37 H 1.08997 * 113.46983 * 321.87006 * 9 8 6 38 38 H 1.09003 * 113.46572 * 92.25315 * 9 8 6 39 39 H 0.96698 * 114.00083 * 175.43404 * 11 10 9 40 40 H 1.08995 * 109.47004 * 57.94576 * 12 10 9 41 41 H 1.09000 * 109.47033 * 177.94167 * 12 10 9 42 42 H 0.97007 * 120.00059 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.47419 * 203.70406 * 24 15 13 44 44 H 1.09004 * 109.47694 * 323.70035 * 24 15 13 45 45 H 1.09004 * 113.47026 * 267.69148 * 27 8 6 46 46 H 1.08998 * 113.46751 * 38.07977 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9722 1.3383 7 8 0.9509 -2.5094 0.5039 8 7 2.0680 -2.6657 2.4166 9 6 1.8960 -4.0344 2.9263 10 6 2.1059 -3.4777 4.3413 11 8 0.9106 -3.0118 4.9708 12 6 2.9618 -4.3675 5.2449 13 6 2.2780 -5.6970 5.4341 14 8 1.2347 -5.9294 4.8609 15 7 2.8257 -6.6278 6.2404 16 6 2.2039 -7.8376 6.4121 17 1 1.4953 -8.1896 5.6770 18 6 2.4852 -8.6106 7.5318 19 7 3.1575 -8.0931 8.5354 20 14 1.9078 -10.3854 7.6107 21 1 2.5053 -11.1506 6.4871 22 1 2.3326 -10.9873 8.9001 23 1 0.4270 -10.4291 7.5074 24 6 4.0861 -6.3473 6.9324 25 6 3.8103 -5.6011 8.1709 26 7 3.5929 -5.0249 9.1283 27 6 2.8939 -2.3867 3.6010 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6767 -1.7488 -1.2493 35 1 1.6767 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 0.8963 -4.4364 2.7618 38 1 2.6828 -4.7183 2.6078 39 1 1.0338 -2.7266 5.8865 40 1 3.9369 -4.5229 4.7834 41 1 3.0911 -3.8843 6.2134 42 1 3.3543 -8.6329 9.3170 43 1 4.5832 -7.2861 7.1768 44 1 4.7311 -5.7524 6.2857 45 1 3.9472 -2.6312 3.4633 46 1 2.7432 -1.3875 4.0097 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001546236199.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:43 Heat of formation + Delta-G solvation = -74.303745 kcal Electronic energy + Delta-G solvation = -30274.854909 eV Core-core repulsion = 25974.723071 eV Total energy + Delta-G solvation = -4300.131838 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.99680 -39.97490 -38.54492 -36.70838 -35.80280 -35.08838 -34.35618 -34.05810 -32.03046 -30.75439 -27.84017 -27.58749 -27.51643 -27.32116 -26.10667 -24.65255 -22.21606 -20.63657 -19.48975 -19.23616 -17.99699 -17.67912 -16.90919 -16.55021 -16.38981 -16.31052 -16.11989 -15.17094 -15.09736 -14.71333 -14.67251 -14.14253 -14.03143 -13.94585 -13.43261 -13.35207 -13.06566 -12.96606 -12.68528 -12.55061 -12.31645 -12.11901 -12.05374 -12.02294 -11.85390 -11.68059 -11.55825 -11.53838 -11.42214 -11.31076 -11.15389 -10.70501 -10.61376 -10.47341 -10.44966 -10.38981 -10.03212 -9.80206 -9.30696 -8.77899 -8.64747 -8.09392 -6.53337 -4.10705 1.99144 2.91662 3.09217 3.18888 3.20362 3.46306 3.67371 3.73899 3.89341 3.99130 4.11551 4.20493 4.55869 4.59466 4.73934 4.77846 4.84730 4.90715 5.01942 5.15053 5.19515 5.27101 5.35630 5.36401 5.42125 5.49998 5.54356 5.58127 5.64589 5.70346 5.73051 5.80681 5.89010 5.91895 6.04787 6.08973 6.14706 6.21356 6.47484 6.52482 7.40630 7.75442 7.76669 7.83940 8.21307 8.38440 8.66340 8.93874 9.11748 9.64464 10.51715 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023381 B = 0.002499 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.284376 B =11202.113070 C =11881.041072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.364 6.364 6 C 0.683 3.317 7 O -0.568 6.568 8 N -0.629 5.629 9 C 0.152 3.848 10 C 0.125 3.875 11 O -0.519 6.519 12 C -0.155 4.155 13 C 0.457 3.543 14 O -0.555 6.555 15 N -0.445 5.445 16 C -0.307 4.307 17 H 0.107 0.893 18 C 0.031 3.969 19 N -0.888 5.888 20 Si 0.933 3.067 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.221 3.779 25 C 0.247 3.753 26 N -0.477 5.477 27 C 0.076 3.924 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.379 0.621 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.274 0.726 43 H 0.133 0.867 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.563 13.631 -12.305 19.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.098 3.902 3 C -0.196 4.196 4 C -0.240 4.240 5 O -0.279 6.279 6 C 0.439 3.561 7 O -0.458 6.458 8 N -0.371 5.371 9 C 0.032 3.968 10 C 0.081 3.919 11 O -0.324 6.324 12 C -0.196 4.196 13 C 0.244 3.756 14 O -0.437 6.437 15 N -0.166 5.166 16 C -0.434 4.434 17 H 0.125 0.875 18 C -0.172 4.172 19 N -0.528 5.528 20 Si 0.759 3.241 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.198 1.198 24 C 0.094 3.906 25 C -0.071 4.071 26 N -0.157 5.157 27 C -0.047 4.047 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.227 0.773 40 H 0.119 0.881 41 H 0.109 0.891 42 H 0.085 0.915 43 H 0.151 0.849 44 H 0.098 0.902 45 H 0.113 0.887 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.201 14.153 -12.107 19.092 hybrid contribution 0.195 -0.966 0.572 1.139 sum 4.396 13.187 -11.535 18.063 Atomic orbital electron populations 1.22519 0.94020 1.05243 1.02314 1.22049 0.94444 0.91434 0.82250 1.21845 1.02132 0.92636 1.03022 1.22514 1.01438 1.03634 0.96425 1.86295 1.71518 1.23775 1.46275 1.17167 0.78736 0.80112 0.80068 1.90894 1.41756 1.70681 1.42463 1.48026 1.53011 1.15056 1.20982 1.23038 1.04887 0.81788 0.87131 1.21875 0.85735 0.92276 0.91990 1.86575 1.30410 1.84814 1.30554 1.22195 1.00133 0.96227 1.01094 1.19880 0.86226 0.84598 0.84850 1.90612 1.23323 1.79143 1.50580 1.43596 1.19253 1.13845 1.39885 1.19687 1.24425 0.92534 1.06758 0.87537 1.25316 0.97043 1.00802 0.94032 1.69713 1.40283 1.36735 1.06085 0.85877 0.79383 0.81379 0.77437 1.19706 1.21008 1.19820 1.18788 0.87954 0.99600 0.84302 1.29461 0.92622 0.90358 0.94674 1.81019 1.08321 1.14903 1.11453 1.23894 0.96040 1.01271 0.83535 0.92171 0.91279 0.89266 0.91560 0.90220 0.91515 0.89321 0.91242 0.92266 0.88313 0.88244 0.77299 0.88129 0.89073 0.91525 0.84917 0.90226 0.88658 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 8.37 37.16 0.31 -1.75 16 2 C 0.14 1.51 1.13 -90.61 -0.10 1.40 16 3 C -0.14 -1.10 8.85 37.16 0.33 -0.78 16 4 C -0.18 -1.93 8.37 37.16 0.31 -1.62 16 5 O -0.36 -5.07 9.91 -40.29 -0.40 -5.47 16 6 C 0.68 11.01 8.26 54.06 0.45 11.46 16 7 O -0.57 -10.33 12.66 -19.28 -0.24 -10.58 16 8 N -0.63 -9.41 3.69 -190.87 -0.70 -10.11 16 9 C 0.15 2.36 6.68 -8.50 -0.06 2.30 16 10 C 0.12 1.74 1.16 -90.05 -0.10 1.64 16 11 O -0.52 -8.21 13.43 -35.37 -0.47 -8.68 16 12 C -0.16 -2.12 3.96 -27.88 -0.11 -2.23 16 13 C 0.46 9.02 7.38 -10.99 -0.08 8.94 16 14 O -0.56 -13.08 14.51 5.41 0.08 -13.00 16 15 N -0.44 -9.36 2.60 -117.94 -0.31 -9.67 16 16 C -0.31 -7.41 9.31 -14.93 -0.14 -7.55 16 17 H 0.11 2.73 7.39 -52.49 -0.39 2.34 16 18 C 0.03 0.72 5.08 -17.47 -0.09 0.63 16 19 N -0.89 -21.25 9.11 55.50 0.51 -20.74 16 20 Si 0.93 19.18 29.57 -169.99 -5.03 14.15 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 C 0.22 3.90 4.90 -6.83 -0.03 3.86 16 25 C 0.25 4.94 12.80 -20.68 -0.26 4.68 16 26 N -0.48 -10.44 18.55 42.25 0.78 -9.66 16 27 C 0.08 0.88 8.08 -8.45 -0.07 0.81 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 1.26 5.88 -51.93 -0.31 0.96 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 1.18 5.88 -51.93 -0.31 0.87 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.10 1.84 8.01 -51.93 -0.42 1.43 16 38 H 0.10 1.35 8.10 -51.93 -0.42 0.93 16 39 H 0.38 4.61 8.99 45.56 0.41 5.02 16 40 H 0.10 1.02 7.34 -51.93 -0.38 0.64 16 41 H 0.09 1.17 7.34 -51.93 -0.38 0.78 16 42 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 43 H 0.13 2.48 6.39 -51.93 -0.33 2.15 16 44 H 0.08 0.99 6.78 -51.93 -0.35 0.64 16 45 H 0.10 0.82 7.96 -51.93 -0.41 0.41 16 46 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 383.19 15.07 5.77 5.77 Total: -1.00 -32.95 383.19 -5.47 -38.41 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -5.80 Total: 7.79 kcal Atomic # 6 Polarization: 21.44 SS G_CDS: 0.35 Total: 21.79 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: 0.28 Total: -50.18 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -1.04 Total: -37.74 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.95 -5.47 -38.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546236199.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.891 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds